Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6RJU	4906	2023-04-19	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	9.8	0.003	0.63	0.0	0.03	15.97	0.00	2.424	6.03	0.00	6.2	93.8	0.0	-0.13	1.31	0.27	0.05	0.48	1992	131	1	0	0	0	997	logfile
✔	7N8N	24238	2023-04-22	2021-06-15	3.89	5.26	—	4.4	0.006	0.85	0.0	0.04	28.11	0.01	2.035	27.61	0.00	9.6	90.4	0.0	-1.71	0.87	0.78	-0.56	4.4	0.005	0.74	0.0	0.04	28.70	0.01	2.032	25.58	0.31	6.5	93.3	0.3	-0.47	1.28	0.87	0.80	-0.27	11121	798	6	250	0	0	0	logfile
✔	7KU5	23034	2023-04-19	2020-11-24	3.76	3.63	—	3.9	0.006	1.29	0.0	0.07	14.85	0.01	2.420	3.63	0.00	12.8	87.2	0.0	-5.41	0.23	0.65	-0.48	3.9	0.002	0.72	0.0	0.04	15.66	0.01	2.252	10.89	0.00	9.3	90.7	0.0	-1.34	1.18	0.24	0.69	2.46	750	88	1	0	4	0	0	logfile
✔	7ZPK	14856	2023-04-27	2022-04-27	3.81	7.29	3.88	5.6	0.004	0.81	0.0	0.05	13.25	0.02	2.214	2.12	0.68	2.8	97.2	0.0	0.04	0.81	0.55	-0.44	4.1	0.004	0.67	0.0	0.04	15.75	0.01	1.886	22.41	0.38	4.9	95.1	0.0	0.42	2.37	0.86	0.73	-0.53	25935	1513	3	55	0	0	12760	logfile
✔	8DWi	27755	2023-04-19	2022-08-01	3.4	4.06	3.58	4.1	0.003	0.63	0.0	0.04	13.02	0.01	2.258	7.44	0.00	5.0	95.0	0.0	0.29	0.28	0.33	-0.40	4.0	0.003	0.74	0.0	0.04	16.17	0.01	2.113	11.24	0.64	5.0	95.0	0.0	-0.32	1.76	0.49	0.73	1.52	3192	424	1	0	0	0	0	logfile
✔	7Q4W	13819	2023-04-24	2021-11-02	3.78	5.84	—	4.5	0.005	0.84	0.0	0.05	13.85	0.01	2.186	8.26	0.52	3.1	96.8	0.0	-0.36	0.83	0.65	-0.36	4.5	0.004	0.73	0.0	0.05	15.20	0.00	2.119	22.47	0.67	4.1	95.9	0.0	-0.03	0.63	0.92	0.84	0.36	18050	2364	12	0	22	0	0	logfile
✔	5VA2	8651	2023-04-24	2017-03-24	3.8	5.28	—	4.3	0.008	1.08	0.0	0.06	12.47	0.00	1.607	11.18	1.08	7.7	90.7	1.6	-3.86	0.64	0.74	-0.32	4.3	0.004	0.98	0.0	0.05	16.04	0.00	2.082	26.45	0.70	5.3	94.3	0.4	-1.34	2.67	0.67	0.83	0.03	17576	2232	4	0	0	0	0	logfile
✔	7FG3	31577	2023-04-21	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.29	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.004	0.92	0.0	0.05	16.64	0.01	2.088	24.71	0.10	15.3	84.1	0.5	-3.68	0.78	0.23	0.45	0.35	9054	1166	2	0	0	0	0	logfile
✔	7TTS	26122	2023-04-24	2022-02-01	2.9	12.34	—	—	0.008	0.99	1.0	0.08	12.67	0.01	1.788	5.64	0.30	3.2	96.6	0.1	1.89	0.77	0.55	-0.20	—	0.003	0.60	0.0	0.04	13.61	0.00	1.831	19.04	0.24	3.7	96.2	0.1	1.97	1.03	0.84	0.81	-0.20	18793	2686	12	0	23	0	0	logfile
✔	7oLE	12979	2023-04-28	2021-05-19	3.41	4.34	3.59	3.9	0.013	1.74	25.0	0.10	15.12	0.01	1.371	42.05	0.38	17.2	81.9	0.8	-5.68	0.55	0.26	-0.19	3.6	0.005	0.85	0.0	0.04	15.96	0.00	2.067	24.45	0.57	11.8	88.0	0.2	-2.00	1.97	0.76	0.74	0.66	26995	2899	14	0	1129	0	0	logfile
✔	7RYE	24735	2023-04-25	2021-08-25	3.9	4.10	—	4.0	0.003	0.65	0.0	0.04	14.57	0.00	2.090	14.13	0.00	3.7	96.3	0.0	1.07	0.76	0.69	-0.18	4.0	0.004	0.75	0.0	0.04	17.66	0.00	2.049	16.16	0.42	4.3	95.7	0.0	1.29	1.09	0.81	0.79	0.32	19708	2535	24	0	0	0	0	logfile
✔	8CTG	26989	2023-04-20	2022-05-14	3.8	3.16	3.72	3.3	0.004	0.98	0.0	0.05	7.62	0.01	2.113	12.33	6.90	9.7	88.5	1.8	-3.04	0.57	0.35	-0.17	2.3	0.004	0.91	0.0	0.04	7.56	0.00	2.231	7.59	1.15	15.0	84.8	0.2	-3.09	2.07	0.60	0.45	1.92	5100	1006	4	0	1	0	0	logfile
✔	7oCK	12809	2023-04-28	2021-04-27	3.6	5.02	—	8.3	0.008	0.86	0.0	0.05	14.98	0.01	1.988	36.10	0.20	7.7	92.1	0.2	-2.93	0.80	0.41	-0.16	5.6	0.005	0.92	0.0	0.05	16.96	0.01	2.008	39.34	0.37	7.5	92.4	0.1	-1.36	1.42	0.87	0.65	0.03	28276	3666	12	0	0	0	0	logfile
✔	7PC2	13316	2023-04-28	2021-08-03	2.8	3.39	—	6.5	0.033	1.66	5.0	0.06	15.68	0.01	1.809	9.01	1.49	7.8	92.2	0.0	-3.81	0.43	0.05	-0.14	3.1	0.005	1.10	2.0	0.06	17.89	0.01	1.959	19.86	4.47	7.3	92.7	0.0	-2.01	1.76	0.68	0.63	1.39	27063	3093	68	0	210	0	0	logfile
✔	7LJ3	23388	2023-04-27	2021-01-28	2.9	2.92	—	3.4	0.005	0.72	0.0	0.04	17.12	0.00	1.041	27.61	3.30	3.6	96.0	0.4	0.29	0.10	0.23	-0.14	2.9	0.003	0.60	0.0	0.03	19.24	0.00	2.017	7.67	4.04	4.5	95.4	0.2	2.58	1.42	0.22	0.79	1.76	25714	2564	12	225	0	0	0	logfile
✔	8E55	27903	2023-04-22	2022-08-19	3.85	4.07	3.34	4.0	0.007	0.67	0.0	0.03	12.36	0.00	2.252	3.39	0.50	2.5	97.5	0.0	1.17	0.66	0.60	-0.11	4.0	0.003	0.55	0.0	0.03	16.13	0.00	2.262	10.49	0.00	1.8	98.2	0.0	4.40	1.43	0.69	0.70	-0.11	12176	780	4	0	0	0	6104	logfile
✘	6UMM	20820	2023-04-26	2019-10-09	3.7	6.74	4.15	4.0	0.006	0.79	0.0	0.04	13.23	0.00	2.203	11.97	0.17	4.8	95.2	0.0	-2.07	0.55	0.56	-0.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23658	3184	10	0	0	0	0	logfile
✔	5G2X	3331	2023-04-24	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.005	0.87	0.0	0.04	19.17	0.01	1.949	36.81	0.45	21.6	77.1	1.3	-5.19	1.94	0.80	0.66	0.50	19072	487	3	704	0	0	0	logfile
✔	7UHB	26511	2023-04-19	2022-03-26	3.0	3.17	2.97	3.2	0.011	1.36	3.0	0.12	9.92	0.00	2.562	5.08	1.42	3.0	96.6	0.4	-0.52	0.52	0.54	-0.09	3.2	0.003	0.61	0.0	0.04	16.83	0.00	2.223	8.94	2.84	3.0	97.0	0.0	0.69	2.47	0.69	0.83	3.49	2141	270	3	0	3	0	0	logfile
✔	6Z5U	11082	2023-04-24	2020-05-27	3.9	4.52	—	38.0	0.021	1.88	10.0	0.11	11.91	0.01	0.901	4.89	1.69	2.0	97.7	0.3	-0.47	0.18	0.03	-0.06	4.1	0.003	0.71	0.0	0.04	14.35	0.00	2.124	12.51	0.36	5.1	94.9	0.0	-0.25	1.55	0.28	0.16	0.60	17880	2334	14	0	4	0	0	logfile

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