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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6RJU | 4906 | 2023-04-19 | 2019-04-29 | 3.2 | 4.49 | 2.14 | 10.0 | 0.007 | 0.93 | 0.0 | 0.05 | 15.36 | 0.00 | 2.423 | 4.52 | 0.00 | 11.6 | 88.4 | 0.0 | -7.10 | 0.22 | -0.01 | -0.80 | 9.8 | 0.003 | 0.63 | 0.0 | 0.03 | 15.97 | 0.00 | 2.424 | 6.03 | 0.00 | 6.2 | 93.8 | 0.0 | -0.13 | 1.31 | 0.27 | 0.05 | 0.48 | 1992 | 131 | 1 | 0 | 0 | 0 | 997 | logfile |
✔ | 7N8N | 24238 | 2023-04-22 | 2021-06-15 | 3.89 | 5.26 | — | 4.4 | 0.006 | 0.85 | 0.0 | 0.04 | 28.11 | 0.01 | 2.035 | 27.61 | 0.00 | 9.6 | 90.4 | 0.0 | -1.71 | 0.87 | 0.78 | -0.56 | 4.4 | 0.005 | 0.74 | 0.0 | 0.04 | 28.70 | 0.01 | 2.032 | 25.58 | 0.31 | 6.5 | 93.3 | 0.3 | -0.47 | 1.28 | 0.87 | 0.80 | -0.27 | 11121 | 798 | 6 | 250 | 0 | 0 | 0 | logfile |
✔ | 7KU5 | 23034 | 2023-04-19 | 2020-11-24 | 3.76 | 3.63 | — | 3.9 | 0.006 | 1.29 | 0.0 | 0.07 | 14.85 | 0.01 | 2.420 | 3.63 | 0.00 | 12.8 | 87.2 | 0.0 | -5.41 | 0.23 | 0.65 | -0.48 | 3.9 | 0.002 | 0.72 | 0.0 | 0.04 | 15.66 | 0.01 | 2.252 | 10.89 | 0.00 | 9.3 | 90.7 | 0.0 | -1.34 | 1.18 | 0.24 | 0.69 | 2.46 | 750 | 88 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 7ZPK | 14856 | 2023-04-27 | 2022-04-27 | 3.81 | 7.29 | 3.88 | 5.6 | 0.004 | 0.81 | 0.0 | 0.05 | 13.25 | 0.02 | 2.214 | 2.12 | 0.68 | 2.8 | 97.2 | 0.0 | 0.04 | 0.81 | 0.55 | -0.44 | 4.1 | 0.004 | 0.67 | 0.0 | 0.04 | 15.75 | 0.01 | 1.886 | 22.41 | 0.38 | 4.9 | 95.1 | 0.0 | 0.42 | 2.37 | 0.86 | 0.73 | -0.53 | 25935 | 1513 | 3 | 55 | 0 | 0 | 12760 | logfile |
✔ | 8DWi | 27755 | 2023-04-19 | 2022-08-01 | 3.4 | 4.06 | 3.58 | 4.1 | 0.003 | 0.63 | 0.0 | 0.04 | 13.02 | 0.01 | 2.258 | 7.44 | 0.00 | 5.0 | 95.0 | 0.0 | 0.29 | 0.28 | 0.33 | -0.40 | 4.0 | 0.003 | 0.74 | 0.0 | 0.04 | 16.17 | 0.01 | 2.113 | 11.24 | 0.64 | 5.0 | 95.0 | 0.0 | -0.32 | 1.76 | 0.49 | 0.73 | 1.52 | 3192 | 424 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q4W | 13819 | 2023-04-24 | 2021-11-02 | 3.78 | 5.84 | — | 4.5 | 0.005 | 0.84 | 0.0 | 0.05 | 13.85 | 0.01 | 2.186 | 8.26 | 0.52 | 3.1 | 96.8 | 0.0 | -0.36 | 0.83 | 0.65 | -0.36 | 4.5 | 0.004 | 0.73 | 0.0 | 0.05 | 15.20 | 0.00 | 2.119 | 22.47 | 0.67 | 4.1 | 95.9 | 0.0 | -0.03 | 0.63 | 0.92 | 0.84 | 0.36 | 18050 | 2364 | 12 | 0 | 22 | 0 | 0 | logfile |
✔ | 5VA2 | 8651 | 2023-04-24 | 2017-03-24 | 3.8 | 5.28 | — | 4.3 | 0.008 | 1.08 | 0.0 | 0.06 | 12.47 | 0.00 | 1.607 | 11.18 | 1.08 | 7.7 | 90.7 | 1.6 | -3.86 | 0.64 | 0.74 | -0.32 | 4.3 | 0.004 | 0.98 | 0.0 | 0.05 | 16.04 | 0.00 | 2.082 | 26.45 | 0.70 | 5.3 | 94.3 | 0.4 | -1.34 | 2.67 | 0.67 | 0.83 | 0.03 | 17576 | 2232 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FG3 | 31577 | 2023-04-21 | 2021-07-25 | 3.9 | 3.62 | — | 4.0 | 0.006 | 1.13 | 0.0 | 0.06 | 14.47 | 0.01 | 1.929 | 37.29 | 0.00 | 18.5 | 80.8 | 0.7 | -4.60 | 0.22 | 0.47 | -0.27 | 4.0 | 0.004 | 0.92 | 0.0 | 0.05 | 16.64 | 0.01 | 2.088 | 24.71 | 0.10 | 15.3 | 84.1 | 0.5 | -3.68 | 0.78 | 0.23 | 0.45 | 0.35 | 9054 | 1166 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TTS | 26122 | 2023-04-24 | 2022-02-01 | 2.9 | 12.34 | — | — | 0.008 | 0.99 | 1.0 | 0.08 | 12.67 | 0.01 | 1.788 | 5.64 | 0.30 | 3.2 | 96.6 | 0.1 | 1.89 | 0.77 | 0.55 | -0.20 | — | 0.003 | 0.60 | 0.0 | 0.04 | 13.61 | 0.00 | 1.831 | 19.04 | 0.24 | 3.7 | 96.2 | 0.1 | 1.97 | 1.03 | 0.84 | 0.81 | -0.20 | 18793 | 2686 | 12 | 0 | 23 | 0 | 0 | logfile |
✔ | 7oLE | 12979 | 2023-04-28 | 2021-05-19 | 3.41 | 4.34 | 3.59 | 3.9 | 0.013 | 1.74 | 25.0 | 0.10 | 15.12 | 0.01 | 1.371 | 42.05 | 0.38 | 17.2 | 81.9 | 0.8 | -5.68 | 0.55 | 0.26 | -0.19 | 3.6 | 0.005 | 0.85 | 0.0 | 0.04 | 15.96 | 0.00 | 2.067 | 24.45 | 0.57 | 11.8 | 88.0 | 0.2 | -2.00 | 1.97 | 0.76 | 0.74 | 0.66 | 26995 | 2899 | 14 | 0 | 1129 | 0 | 0 | logfile |
✔ | 7RYE | 24735 | 2023-04-25 | 2021-08-25 | 3.9 | 4.10 | — | 4.0 | 0.003 | 0.65 | 0.0 | 0.04 | 14.57 | 0.00 | 2.090 | 14.13 | 0.00 | 3.7 | 96.3 | 0.0 | 1.07 | 0.76 | 0.69 | -0.18 | 4.0 | 0.004 | 0.75 | 0.0 | 0.04 | 17.66 | 0.00 | 2.049 | 16.16 | 0.42 | 4.3 | 95.7 | 0.0 | 1.29 | 1.09 | 0.81 | 0.79 | 0.32 | 19708 | 2535 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CTG | 26989 | 2023-04-20 | 2022-05-14 | 3.8 | 3.16 | 3.72 | 3.3 | 0.004 | 0.98 | 0.0 | 0.05 | 7.62 | 0.01 | 2.113 | 12.33 | 6.90 | 9.7 | 88.5 | 1.8 | -3.04 | 0.57 | 0.35 | -0.17 | 2.3 | 0.004 | 0.91 | 0.0 | 0.04 | 7.56 | 0.00 | 2.231 | 7.59 | 1.15 | 15.0 | 84.8 | 0.2 | -3.09 | 2.07 | 0.60 | 0.45 | 1.92 | 5100 | 1006 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7oCK | 12809 | 2023-04-28 | 2021-04-27 | 3.6 | 5.02 | — | 8.3 | 0.008 | 0.86 | 0.0 | 0.05 | 14.98 | 0.01 | 1.988 | 36.10 | 0.20 | 7.7 | 92.1 | 0.2 | -2.93 | 0.80 | 0.41 | -0.16 | 5.6 | 0.005 | 0.92 | 0.0 | 0.05 | 16.96 | 0.01 | 2.008 | 39.34 | 0.37 | 7.5 | 92.4 | 0.1 | -1.36 | 1.42 | 0.87 | 0.65 | 0.03 | 28276 | 3666 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PC2 | 13316 | 2023-04-28 | 2021-08-03 | 2.8 | 3.39 | — | 6.5 | 0.033 | 1.66 | 5.0 | 0.06 | 15.68 | 0.01 | 1.809 | 9.01 | 1.49 | 7.8 | 92.2 | 0.0 | -3.81 | 0.43 | 0.05 | -0.14 | 3.1 | 0.005 | 1.10 | 2.0 | 0.06 | 17.89 | 0.01 | 1.959 | 19.86 | 4.47 | 7.3 | 92.7 | 0.0 | -2.01 | 1.76 | 0.68 | 0.63 | 1.39 | 27063 | 3093 | 68 | 0 | 210 | 0 | 0 | logfile |
✔ | 7LJ3 | 23388 | 2023-04-27 | 2021-01-28 | 2.9 | 2.92 | — | 3.4 | 0.005 | 0.72 | 0.0 | 0.04 | 17.12 | 0.00 | 1.041 | 27.61 | 3.30 | 3.6 | 96.0 | 0.4 | 0.29 | 0.10 | 0.23 | -0.14 | 2.9 | 0.003 | 0.60 | 0.0 | 0.03 | 19.24 | 0.00 | 2.017 | 7.67 | 4.04 | 4.5 | 95.4 | 0.2 | 2.58 | 1.42 | 0.22 | 0.79 | 1.76 | 25714 | 2564 | 12 | 225 | 0 | 0 | 0 | logfile |
✔ | 8E55 | 27903 | 2023-04-22 | 2022-08-19 | 3.85 | 4.07 | 3.34 | 4.0 | 0.007 | 0.67 | 0.0 | 0.03 | 12.36 | 0.00 | 2.252 | 3.39 | 0.50 | 2.5 | 97.5 | 0.0 | 1.17 | 0.66 | 0.60 | -0.11 | 4.0 | 0.003 | 0.55 | 0.0 | 0.03 | 16.13 | 0.00 | 2.262 | 10.49 | 0.00 | 1.8 | 98.2 | 0.0 | 4.40 | 1.43 | 0.69 | 0.70 | -0.11 | 12176 | 780 | 4 | 0 | 0 | 0 | 6104 | logfile |
✘ | 6UMM | 20820 | 2023-04-26 | 2019-10-09 | 3.7 | 6.74 | 4.15 | 4.0 | 0.006 | 0.79 | 0.0 | 0.04 | 13.23 | 0.00 | 2.203 | 11.97 | 0.17 | 4.8 | 95.2 | 0.0 | -2.07 | 0.55 | 0.56 | -0.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23658 | 3184 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 5G2X | 3331 | 2023-04-24 | 2016-04-16 | 3.8 | 3.49 | — | 3.4 | 0.001 | 0.32 | 0.0 | 0.02 | 11.56 | 0.00 | 2.219 | 4.36 | 0.45 | 19.7 | 74.4 | 5.9 | -5.72 | 0.51 | 0.30 | -0.09 | 3.3 | 0.005 | 0.87 | 0.0 | 0.04 | 19.17 | 0.01 | 1.949 | 36.81 | 0.45 | 21.6 | 77.1 | 1.3 | -5.19 | 1.94 | 0.80 | 0.66 | 0.50 | 19072 | 487 | 3 | 704 | 0 | 0 | 0 | logfile |
✔ | 7UHB | 26511 | 2023-04-19 | 2022-03-26 | 3.0 | 3.17 | 2.97 | 3.2 | 0.011 | 1.36 | 3.0 | 0.12 | 9.92 | 0.00 | 2.562 | 5.08 | 1.42 | 3.0 | 96.6 | 0.4 | -0.52 | 0.52 | 0.54 | -0.09 | 3.2 | 0.003 | 0.61 | 0.0 | 0.04 | 16.83 | 0.00 | 2.223 | 8.94 | 2.84 | 3.0 | 97.0 | 0.0 | 0.69 | 2.47 | 0.69 | 0.83 | 3.49 | 2141 | 270 | 3 | 0 | 3 | 0 | 0 | logfile |
✔ | 6Z5U | 11082 | 2023-04-24 | 2020-05-27 | 3.9 | 4.52 | — | 38.0 | 0.021 | 1.88 | 10.0 | 0.11 | 11.91 | 0.01 | 0.901 | 4.89 | 1.69 | 2.0 | 97.7 | 0.3 | -0.47 | 0.18 | 0.03 | -0.06 | 4.1 | 0.003 | 0.71 | 0.0 | 0.04 | 14.35 | 0.00 | 2.124 | 12.51 | 0.36 | 5.1 | 94.9 | 0.0 | -0.25 | 1.55 | 0.28 | 0.16 | 0.60 | 17880 | 2334 | 14 | 0 | 4 | 0 | 0 | logfile |