Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LC9	23270	2023-11-13	2021-01-10	3.2	3.25	—	3.1	0.004	0.72	0.0	0.05	17.46	0.00	1.884	31.60	18.58	13.4	86.6	0.0	-4.15	0.71	0.77	-0.84	3.1	0.003	0.67	0.0	0.05	16.66	0.00	2.060	26.52	1.18	10.8	89.2	0.0	-3.54	0.68	0.68	0.78	0.44	3497	525	12	0	0	0	0	logfile
✔	6RJU	4906	2023-11-13	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	9.8	0.003	0.63	0.0	0.03	15.97	0.00	2.424	6.03	0.00	6.2	93.8	0.0	-0.13	1.31	0.27	0.05	0.48	1992	131	1	0	0	0	997	logfile
✔	7N8N	24238	2023-11-15	2021-06-15	3.89	5.26	—	4.4	0.006	0.85	0.0	0.04	28.11	0.01	2.035	27.61	0.00	9.6	90.4	0.0	-1.71	0.87	0.78	-0.56	4.4	0.004	0.75	0.0	0.04	29.07	0.01	2.103	24.05	0.62	7.5	92.3	0.3	-1.01	0.76	0.88	0.80	-0.40	11121	798	6	250	0	0	0	logfile
✔	7KU5	23034	2023-11-13	2020-11-24	3.76	3.63	—	3.9	0.006	1.29	0.0	0.07	14.85	0.01	2.420	3.63	0.00	12.8	87.2	0.0	-5.41	0.23	0.65	-0.48	3.9	0.002	0.72	0.0	0.04	15.66	0.01	2.252	10.89	0.00	9.3	90.7	0.0	-1.34	1.18	0.24	0.69	2.46	750	88	1	0	4	0	0	logfile
✔	7ZPK	14856	2023-11-19	2022-04-27	3.81	7.29	3.88	5.6	0.004	0.81	0.0	0.05	13.25	0.02	2.214	2.12	0.68	2.8	97.2	0.0	0.04	0.81	0.55	-0.44	4.0	0.003	0.65	0.0	0.04	15.75	0.00	1.929	18.86	0.15	4.0	96.0	0.0	0.20	2.33	0.85	0.67	-0.54	25935	1513	3	55	0	0	12760	logfile
✔	8EFP	28087	2023-11-13	2022-09-08	3.8	4.73	3.90	4.0	0.006	1.46	7.0	0.09	18.61	0.01	1.908	33.65	3.07	13.3	86.7	0.0	-4.26	0.82	0.62	-0.42	4.0	0.003	0.86	0.0	0.04	18.75	0.00	2.083	23.79	0.38	9.6	90.4	0.0	-2.53	0.88	0.84	0.73	-0.29	4705	594	2	0	0	0	0	logfile
✔	8DWi	27755	2023-11-13	2022-08-01	3.4	4.06	3.58	4.1	0.003	0.63	0.0	0.04	13.02	0.01	2.258	7.44	0.00	5.0	95.0	0.0	0.29	0.28	0.33	-0.40	4.0	0.003	0.74	0.0	0.04	16.17	0.01	2.113	11.24	0.64	5.0	95.0	0.0	-0.32	1.76	0.49	0.73	1.52	3192	424	1	0	0	0	0	logfile
✔	7TMC	25995	2023-11-13	2022-01-19	3.25	3.24	2.95	4.2	0.005	0.72	0.0	0.07	14.28	0.01	2.152	13.78	0.00	9.5	90.5	0.0	-4.08	0.21	0.31	-0.39	3.4	0.005	0.89	0.0	0.07	17.14	0.01	2.144	18.47	0.53	12.0	88.0	0.0	-4.18	1.94	0.36	0.76	3.09	3426	405	6	0	12	0	0	logfile
✔	7Q4W	13819	2023-11-17	2021-11-02	3.78	5.84	—	4.5	0.005	0.84	0.0	0.05	13.85	0.01	2.186	8.26	0.52	3.1	96.8	0.0	-0.36	0.83	0.65	-0.36	4.5	0.004	0.73	0.0	0.05	15.20	0.00	2.119	22.47	0.67	4.1	95.9	0.0	-0.03	0.63	0.92	0.84	0.36	18050	2364	12	0	22	0	0	logfile
✔	5VA2	8651	2023-11-17	2017-03-24	3.8	5.28	—	4.3	0.008	1.08	0.0	0.06	12.47	0.00	1.607	11.18	1.08	7.7	90.7	1.6	-3.86	0.64	0.74	-0.32	4.3	0.004	0.98	0.0	0.05	16.04	0.00	2.082	26.45	0.70	5.3	94.3	0.4	-1.34	2.67	0.67	0.83	0.03	17576	2232	4	0	0	0	0	logfile
✔	8A1R	15084	2023-11-14	2022-06-01	3.6	5.63	3.62	3.4	0.011	0.86	0.0	0.06	15.20	0.00	2.097	11.72	0.00	5.2	94.8	0.0	-0.06	0.91	0.75	-0.28	3.5	0.003	0.70	0.0	0.05	16.32	0.00	2.183	19.10	0.30	6.2	93.8	0.0	-0.32	0.60	0.95	0.86	-0.05	9286	1186	4	0	4	0	0	logfile
✔	7FG3	31577	2023-11-14	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.29	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.004	0.92	0.0	0.05	16.64	0.01	2.088	24.71	0.10	15.3	84.1	0.5	-3.68	0.78	0.23	0.45	0.35	9054	1166	2	0	0	0	0	logfile
✘	6TZ5	20589	2023-11-21	2019-08-10	3.1	3.56	3.05	3.7	0.003	0.51	0.0	0.04	14.11	0.00	2.220	7.23	0.00	1.1	98.9	0.0	0.24	0.40	0.55	-0.21	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	93500	12104	68	0	0	0	0	logfile
✔	7TTS	26122	2023-11-17	2022-02-01	2.9	12.34	—	—	0.008	0.99	1.0	0.08	12.67	0.01	1.788	5.64	0.30	3.2	96.6	0.1	1.89	0.77	0.55	-0.20	—	0.003	0.60	0.0	0.04	13.61	0.00	1.831	19.04	0.24	3.7	96.2	0.1	1.97	1.03	0.84	0.81	-0.20	18793	2686	12	0	23	0	0	logfile
✔	7oLE	12979	2023-11-19	2021-05-19	3.41	4.34	3.59	3.9	0.013	1.74	25.0	0.10	15.12	0.01	1.371	42.05	0.38	17.2	81.9	0.8	-5.68	0.55	0.26	-0.19	3.6	0.005	0.85	0.0	0.04	15.96	0.00	2.067	24.45	0.57	11.8	88.0	0.2	-2.00	1.97	0.76	0.74	0.66	26995	2899	14	0	1129	0	0	logfile
✔	7YKS	33896	2023-11-17	2022-07-23	3.0	3.20	3.06	4.7	0.008	1.00	0.0	0.06	10.27	0.01	2.291	4.01	0.00	6.7	93.1	0.2	-6.58	0.17	0.11	-0.18	3.2	0.003	0.77	0.0	0.04	16.58	0.00	2.059	8.61	1.28	4.7	95.3	0.0	-0.45	2.19	0.59	0.80	1.54	18984	2364	4	0	0	0	0	logfile
✔	7RYE	24735	2023-11-17	2021-08-25	3.9	4.10	—	4.0	0.003	0.65	0.0	0.04	14.57	0.00	2.090	14.13	0.00	3.7	96.3	0.0	1.07	0.76	0.69	-0.18	4.0	0.004	0.75	0.0	0.04	17.66	0.00	2.049	16.16	0.42	4.3	95.7	0.0	1.29	1.09	0.81	0.79	0.32	19708	2535	24	0	0	0	0	logfile
✔	8CTG	26989	2023-11-13	2022-05-14	3.8	3.16	3.72	3.3	0.004	0.98	0.0	0.05	7.62	0.01	2.113	12.33	6.90	9.7	88.5	1.8	-3.04	0.57	0.35	-0.17	2.3	0.004	0.91	0.0	0.04	7.56	0.00	2.231	7.59	1.15	15.0	84.8	0.2	-3.09	2.07	0.60	0.45	1.92	5100	1006	4	0	1	0	0	logfile
✔	7oCK	12809	2023-11-19	2021-04-27	3.6	5.02	—	8.3	0.008	0.86	0.0	0.05	14.98	0.01	1.988	36.10	0.20	7.7	92.1	0.2	-2.93	0.80	0.41	-0.16	5.6	0.005	0.92	0.0	0.05	16.96	0.01	2.008	39.34	0.37	7.5	92.4	0.1	-1.36	1.42	0.87	0.65	0.03	28276	3666	12	0	0	0	0	logfile
✔	6CU8	7619	2023-11-13	2018-03-23	3.6	3.65	—	4.2	0.004	0.73	0.0	0.06	7.75	0.00	2.412	6.41	0.00	5.1	94.9	0.0	-2.86	0.45	0.73	-0.16	4.2	0.003	0.71	0.0	0.05	13.21	0.00	2.161	12.65	0.65	10.0	90.0	0.0	-3.04	1.78	0.42	0.72	2.87	2880	410	10	0	0	0	0	logfile

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