Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	5X1G	6701	2021-09-02	2017-01-25	4.5	7.89	—	37.0	0.008	1.42	0.0	0.05	10.05	0.01	2.345	27.78	0.00	6.9	93.1	0.0	-2.75	0.00	0.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	155	31	1	0	0	0	0	logfile
✘	5A7U	3079	2021-09-02	2015-07-10	4.8	3.82	—	4.6	0.020	3.41	3.0	0.25	21.78	0.08	2.651	28.57	25.00	24.0	72.0	4.0	-6.05	-0.01	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	1	0	1	0	231	logfile
✔	7DA4	30622	2021-09-02	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	77.78	0.00	50.0	50.0	0.0	-8.65	0.39	0.65	—	7.1	0.004	1.01	0.0	0.04	12.09	0.00	2.235	22.22	0.00	30.0	70.0	0.0	-6.55	3.69	0.42	0.65	—	507	66	3	0	0	0	0	logfile
✔	6TGN	10499	2021-09-02	2019-11-17	3.9	3.83	—	4.0	0.010	1.73	0.0	0.12	11.93	0.01	2.161	5.17	1.39	4.7	95.3	0.0	-3.57	0.54	0.90	1.73	4.0	0.004	0.95	0.0	0.04	16.18	0.00	2.278	12.55	1.39	1.2	98.8	0.0	0.39	1.21	0.53	0.82	0.82	672	88	1	0	0	0	0	logfile
✔	5LiJ	4054	2021-09-02	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	22.98	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.004	1.11	0.0	0.04	9.65	0.00	2.219	12.48	0.00	30.7	69.3	0.0	-5.42	1.52	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✔	6QJP	4565	2021-09-02	2019-01-24	3.5	3.64	2.32	4.1	0.009	1.01	0.0	0.07	9.52	0.01	2.605	1.16	0.00	3.2	96.8	0.0	-2.50	0.37	0.74	3.05	4.2	0.003	0.72	0.0	0.05	12.84	0.00	2.423	11.00	0.00	1.1	98.9	0.0	-3.26	1.60	0.33	0.73	4.12	816	105	3	0	0	0	0	logfile
✔	6QJM	4564	2021-09-02	2019-01-24	3.3	3.49	1.95	3.4	0.010	1.01	0.0	0.07	8.06	0.01	2.408	6.17	0.00	9.1	90.9	0.0	-2.36	0.38	0.76	3.31	3.5	0.003	0.60	0.0	0.05	13.64	0.00	2.150	2.81	0.00	5.1	94.9	0.0	-2.35	1.60	0.34	0.74	3.21	846	111	3	0	0	0	0	logfile
✔	5M5H	4155	2021-09-02	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	38.97	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.003	0.94	0.0	0.06	12.83	0.01	2.355	15.13	0.00	10.3	89.7	0.0	-0.57	2.85	0.14	0.13	—	1086	132	1	0	0	0	0	logfile
✔	6XTB	10618	2021-09-02	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.006	1.33	0.0	0.05	10.83	0.01	2.037	19.23	0.00	34.6	65.4	0.0	-6.29	3.26	0.35	0.66	—	1161	235	1	0	0	0	0	logfile
✔	6VHL	21207	2021-09-02	2020-01-10	3.3	3.60	—	3.5	0.007	1.03	0.0	0.07	15.85	0.01	1.791	13.68	4.48	14.7	85.3	0.0	-6.30	0.26	0.70	3.54	3.8	0.004	0.82	0.0	0.04	16.84	0.01	2.277	9.12	1.49	9.3	90.7	0.0	-3.51	2.75	0.27	0.67	3.28	1190	158	4	0	0	0	0	logfile
✘	7BC5	12139	2021-09-02	2020-12-18	3.1	3.06	3.11	3.1	0.005	1.05	0.0	0.05	15.92	0.01	2.314	7.83	0.76	8.2	91.8	0.0	-5.64	0.23	0.62	0.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1200	161	1	0	0	0	0	logfile
✔	6i5A	4413	2021-09-02	2018-11-13	2.3	2.34	1.50	2.3	0.012	1.84	1.0	0.10	14.16	0.01	2.431	6.70	0.74	1.3	97.4	1.3	-0.89	0.26	0.84	3.95	2.3	0.003	0.58	0.0	0.04	15.98	0.00	2.333	4.19	2.22	1.3	98.7	0.0	2.22	1.22	0.30	0.87	4.33	1206	153	1	0	0	0	0	logfile
✔	6oG3	20051	2021-09-02	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.004	0.91	0.0	0.00	7.17	0.00	2.622	30.38	0.00	6.5	93.5	0.0	-0.51	2.18	0.67	0.85	—	1215	396	4	0	9	0	0	logfile
✔	6QJQ	4566	2021-09-02	2019-01-24	3.7	3.99	2.14	4.1	0.021	1.17	0.0	0.11	13.36	0.01	2.499	5.58	0.00	4.0	94.0	2.0	-4.41	0.39	0.75	2.60	4.2	0.005	0.83	0.0	0.05	14.21	0.00	2.290	9.97	0.69	6.7	93.3	0.0	-3.08	2.14	0.37	0.75	1.88	1218	162	6	0	0	0	0	logfile
✔	6QJH	4563	2021-09-02	2019-01-24	3.3	3.70	2.77	3.6	0.012	1.21	3.0	0.10	14.39	0.01	2.673	1.49	1.96	7.0	93.0	0.0	-3.22	0.36	0.83	2.97	3.6	0.003	0.62	0.0	0.05	15.67	0.00	2.248	3.74	0.00	2.3	97.7	0.0	-2.64	1.57	0.30	0.77	3.00	1302	177	3	0	0	0	0	logfile
✔	6TGP	10500	2021-09-02	2019-11-17	4.4	4.64	—	4.3	0.013	1.90	1.0	0.13	12.88	0.01	2.228	7.38	2.08	5.2	94.8	0.0	-3.36	0.45	0.85	—	4.2	0.003	0.65	0.0	0.04	13.17	0.00	2.270	9.59	0.00	2.9	97.1	0.0	1.08	2.34	0.44	0.78	—	1344	176	2	0	0	0	0	logfile
✔	6FU8	4319	2021-09-02	2018-02-26	3.2	4.42	2.97	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.003	0.73	0.0	0.04	15.97	0.00	2.217	11.73	0.00	10.0	88.8	1.2	-2.85	3.17	0.24	0.68	1.82	1364	82	1	0	0	0	711	logfile
✔	6X0V	21985	2021-09-02	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	13.37	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.49	0.0	0.04	12.41	0.00	2.231	18.72	0.00	4.0	96.0	0.0	1.90	1.19	0.40	0.74	—	1384	211	4	0	0	0	62	logfile
✔	3JBS	6478	2021-09-02	2015-10-13	2.9	3.04	—	3.2	0.010	1.35	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.1	0.003	0.63	0.0	0.04	18.13	0.00	2.333	5.86	1.97	1.7	98.3	0.0	1.47	1.30	0.21	0.80	3.19	1401	175	1	0	0	0	0	logfile
✔	6R23	4708	2021-09-02	2019-03-15	4.9	4.57	—	4.6	0.006	1.07	0.0	0.05	16.56	0.01	2.332	7.52	0.00	7.9	92.1	0.0	-4.61	0.60	0.75	—	4.6	0.003	0.60	0.0	0.03	16.62	0.00	2.403	7.19	0.00	9.0	91.0	0.0	0.23	3.44	0.60	0.73	—	1518	182	2	0	0	0	0	logfile

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