Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oTP	13064	2023-11-20	2021-06-10	3.4	3.69	—	3.6	0.007	0.87	0.0	0.05	14.56	0.01	2.017	14.76	0.16	8.6	91.2	0.2	-1.62	0.80	0.80	1.68	3.6	0.003	0.70	0.0	0.04	15.93	0.00	1.972	10.80	0.28	6.4	93.6	0.0	-0.56	1.37	0.80	0.81	1.25	29039	3636	1	0	23	0	0	logfile
✘	6TAY	10430	2023-11-21	2019-10-31	3.2	2.55	—	2.9	0.011	1.15	0.0	0.06	11.27	0.01	2.066	4.61	0.28	8.9	91.0	0.1	-3.72	0.86	0.82	3.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35241	4350	1	0	71	0	0	logfile
✔	7oTY	13069	2023-11-20	2021-06-10	2.96	3.20	—	3.1	0.013	1.08	1.0	0.06	14.42	0.01	1.177	19.52	0.75	10.1	89.7	0.2	-2.22	0.75	0.78	1.93	3.2	0.003	0.71	0.0	0.04	16.53	0.00	2.173	11.20	1.28	6.9	93.0	0.0	-0.31	0.50	0.76	0.79	1.47	29034	3636	1	0	21	0	0	logfile
✔	7oP1	13011	2023-11-14	2021-05-28	3.7	3.77	—	3.6	0.004	1.16	0.0	0.04	13.67	0.00	1.848	7.11	0.00	4.7	95.3	0.0	-0.69	0.69	0.87	2.43	3.6	0.003	0.55	0.0	0.04	14.97	0.00	1.681	5.18	0.10	3.8	96.2	0.0	0.47	0.30	0.70	0.86	1.63	8744	1098	1	0	3	0	0	logfile
✔	8H8B	34541	2023-11-14	2022-10-22	3.16	3.37	3.20	3.3	0.001	0.46	0.0	0.04	13.00	0.00	2.226	6.42	0.67	6.3	93.7	0.0	-2.99	0.70	0.76	2.74	3.3	0.003	0.62	0.0	0.04	15.26	0.00	2.256	6.60	0.34	9.5	90.5	0.0	-1.76	0.61	0.74	0.85	3.67	8344	1027	1	0	0	0	0	logfile
✔	7oTM	13062	2023-11-20	2021-06-10	3.33	3.97	—	3.7	0.008	0.93	1.0	0.05	14.51	0.01	2.071	16.56	0.28	9.2	90.6	0.2	-1.79	0.82	0.77	1.32	3.7	0.003	0.70	0.0	0.04	15.94	0.00	2.146	11.32	0.16	6.4	93.6	0.0	-0.53	1.41	0.84	0.80	0.80	29040	3636	1	0	21	0	0	logfile
✘	7FBS	31519	2023-11-14	2021-07-12	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9274	1118	1	0	17	0	0	logfile
✔	7WXG	32878	2023-11-13	2022-02-14	4.2	4.21	3.56	4.2	0.012	1.07	0.0	0.05	14.22	0.00	2.184	12.87	0.29	10.7	89.3	0.0	-5.16	0.51	0.80	—	4.2	0.002	0.66	0.0	0.04	14.08	0.00	2.324	9.54	0.00	5.8	94.2	0.0	-0.37	1.29	0.51	0.78	—	3295	430	1	0	1	0	0	logfile
✔	7V0X	26952	2023-11-13	2022-05-11	3.0	2.83	2.92	2.9	0.002	0.63	0.0	0.04	19.06	0.01	2.211	6.52	5.05	4.0	96.0	0.0	0.72	0.61	0.88	3.78	2.9	0.002	0.53	0.0	0.04	19.08	0.00	2.176	7.23	4.38	4.9	95.1	0.0	1.77	0.47	0.60	0.88	3.17	2818	375	1	0	0	0	0	logfile
✔	7N74	24219	2023-11-14	2021-06-09	2.8	3.52	2.84	3.3	0.006	0.89	0.0	0.10	12.93	0.01	1.844	7.52	0.00	2.2	97.8	0.0	0.74	0.75	0.84	3.27	3.3	0.002	0.57	0.0	0.04	14.64	0.00	2.167	4.93	2.06	1.9	98.1	0.0	2.39	0.54	0.68	0.82	2.46	7859	1036	1	0	4	3	0	logfile
✔	6XMS	22262	2023-11-14	2020-06-30	3.4	4.03	3.50	3.8	0.006	1.18	0.0	0.04	12.68	0.00	1.862	6.08	0.00	4.6	95.4	0.0	-2.39	0.74	0.87	2.45	3.8	0.004	0.60	0.0	0.04	14.23	0.00	1.797	5.19	0.11	4.7	95.3	0.0	0.03	0.36	0.74	0.89	1.89	8389	1091	1	0	2	0	0	logfile
✔	7P03	13142	2023-11-18	2021-06-29	3.45	3.78	—	3.7	0.006	0.68	0.0	0.04	13.86	0.00	1.801	6.52	0.00	5.4	94.6	0.0	-0.70	0.62	0.71	1.37	3.7	0.004	0.57	0.0	0.04	15.79	0.00	1.838	7.61	0.17	4.4	95.6	0.0	0.48	0.89	0.64	0.78	1.93	21149	1333	1	0	0	0	10498	logfile
✔	7XGR	33187	2023-11-13	2022-04-06	2.6	3.38	2.47	3.2	0.004	0.71	0.0	0.04	18.88	0.00	2.259	8.70	2.17	6.3	93.7	0.0	-0.28	0.52	0.75	2.35	3.2	0.002	0.61	0.0	0.03	19.07	0.00	2.203	7.19	1.96	5.8	94.2	0.0	2.24	1.25	0.55	0.83	2.09	4340	546	1	0	0	0	0	logfile
✔	7oTV	13067	2023-11-20	2021-06-10	3.24	3.53	—	3.4	0.012	0.79	0.0	0.10	14.61	0.01	2.090	10.98	0.34	8.5	91.4	0.1	-1.18	0.71	0.65	0.82	3.4	0.003	0.73	0.0	0.04	16.70	0.00	2.146	10.78	0.25	5.8	94.1	0.1	-0.43	0.90	0.77	0.77	0.88	29041	3636	1	0	21	0	0	logfile
✔	7N70	24214	2023-11-14	2021-06-09	2.8	3.43	2.92	3.3	0.005	0.73	0.0	0.05	13.21	0.01	2.109	7.93	0.00	1.6	98.4	0.0	0.27	0.74	0.85	2.88	3.3	0.003	0.57	0.0	0.04	15.15	0.00	1.920	7.56	1.15	1.5	98.5	0.0	1.67	0.46	0.63	0.78	2.06	7953	1032	1	0	4	0	0	logfile
✔	7JGD	22323	2023-11-17	2020-07-19	3.38	3.68	—	3.6	0.002	0.43	0.0	0.05	12.94	0.00	2.123	11.45	0.00	3.9	96.1	0.0	1.18	0.61	0.66	2.22	3.6	0.003	0.53	0.0	0.05	14.82	0.00	2.054	14.21	0.08	7.3	92.7	0.0	0.43	0.52	0.63	0.71	1.77	20292	1435	1	0	0	0	8505	logfile
✘	7PQ5	13587	2023-11-14	2021-09-16	3.17	3.58	3.09	3.4	0.005	0.85	0.0	0.05	15.55	0.01	2.255	3.50	2.82	4.5	95.3	0.2	-0.13	0.85	0.87	5.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8512	1047	1	0	0	0	0	logfile
✔	7N78	24223	2023-11-14	2021-06-09	3.0	3.81	3.01	3.5	0.010	0.96	0.0	0.06	12.83	0.01	1.930	8.14	0.00	2.6	97.4	0.0	-1.34	0.71	0.83	3.03	3.5	0.003	0.61	0.0	0.04	13.79	0.00	2.008	6.24	1.09	1.9	98.1	0.0	2.24	0.43	0.64	0.76	1.67	7669	1030	1	0	11	3	0	logfile
✔	7N5F	24188	2023-11-13	2021-06-05	2.7	2.27	2.74	2.0	0.023	1.50	0.0	0.10	9.99	0.01	2.468	0.16	0.00	1.3	98.7	0.0	1.68	0.36	0.75	3.32	1.7	0.003	0.57	0.0	0.04	17.55	0.00	2.307	7.74	1.59	1.6	98.4	0.0	2.51	0.79	0.36	0.78	3.13	3037	386	1	0	1	0	0	logfile
✔	7XD3	33134	2023-11-14	2022-03-26	4.05	4.16	—	3.8	0.003	0.62	0.0	0.04	16.04	0.00	1.960	1.21	0.00	0.0	0.0	0.0	—	0.85	0.74	—	3.9	0.007	0.80	0.0	0.04	17.33	0.01	1.680	17.06	0.00	0.0	0.0	0.0	—	1.79	0.87	0.82	—	9062	0	1	423	28	0	0	logfile

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