Table showing results for October 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5XB1	6714	2021-10-06	2017-03-15	3.0	3.16	2.84	3.1	0.007	0.71	0.0	0.05	10.82	0.00	2.173	4.34	0.00	2.0	98.0	0.0	-6.31	0.80	0.88	4.19	3.1	0.002	0.52	0.0	0.03	18.09	0.00	2.159	3.06	3.24	1.9	98.1	0.0	4.16	0.71	0.78	0.85	3.13	30847	3720	48	0	0	55	0	logfile
✔	5Yi5	6830	2021-10-06	2017-10-02	3.0	4.31	—	4.3	0.007	0.68	0.0	0.04	10.51	0.00	2.314	3.34	0.00	3.5	96.5	0.0	-4.00	0.77	0.80	2.08	4.2	0.006	0.87	0.0	0.04	19.20	0.00	2.091	13.00	4.30	4.3	95.7	0.0	2.47	1.08	0.72	0.78	1.02	33816	4128	24	0	0	0	0	logfile
✔	6L2T	0814	2021-10-04	2019-10-06	4.1	4.14	—	4.2	0.003	0.61	0.0	0.05	12.33	0.00	2.222	5.85	0.15	13.8	86.0	0.2	-5.72	0.61	0.76	—	4.2	0.017	1.30	1.0	0.05	13.10	0.01	2.150	11.01	0.00	15.4	84.5	0.1	-4.49	0.51	0.62	0.77	—	13604	1889	3	0	0	0	0	logfile
✔	5XLP	6731	2021-10-03	2017-05-11	4.2	4.23	—	4.2	0.009	1.36	0.0	0.06	14.75	0.01	2.194	12.48	0.57	18.2	81.4	0.5	-5.53	0.62	0.58	—	4.1	0.015	1.41	1.0	0.05	16.20	0.01	2.064	23.96	0.11	19.2	80.5	0.2	-4.09	2.46	0.66	0.65	—	9952	1343	6	24	0	0	0	logfile
✔	6HN4	0246	2021-10-03	2018-09-14	4.2	4.43	—	4.1	0.007	1.49	2.0	0.07	9.72	0.01	2.187	6.09	0.00	6.9	91.4	1.8	-2.18	0.73	0.70	—	4.2	0.005	0.80	0.0	0.05	12.01	0.01	2.095	19.71	0.00	8.9	91.1	0.0	-0.34	1.24	0.76	0.78	—	5702	700	2	0	6	0	0	logfile
✘	6VAB	21135	2021-10-03	2019-12-17	4.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4642	938	4	0	0	0	0	logfile
✔	6PZi	20535	2021-10-03	2019-07-31	4.5	4.80	—	4.4	0.005	1.13	0.0	0.05	7.87	0.01	2.253	2.60	0.00	6.3	93.7	0.0	-3.83	0.67	0.80	—	4.4	0.003	0.64	0.0	0.04	8.04	0.00	2.158	5.51	0.00	4.0	96.0	0.0	2.15	0.62	0.68	0.83	—	7985	1412	1	0	1	0	0	logfile
✔	5XoN	6747	2021-10-07	2017-05-29	3.83	3.93	—	3.9	0.005	1.23	67.0	0.08	13.12	0.01	1.414	18.14	1.25	11.8	87.4	0.8	-3.90	0.68	0.63	1.85	3.9	0.007	0.86	1.0	0.04	16.24	0.00	1.612	9.70	0.05	5.8	94.1	0.2	-0.74	0.89	0.79	0.78	1.44	38369	4541	26	107	11	0	0	logfile
✔	6NB3	0401	2021-10-06	2018-12-06	3.5	3.78	—	3.7	0.014	1.35	3.0	0.08	10.77	0.01	2.139	1.07	0.41	2.7	97.1	0.2	0.07	0.77	0.74	2.09	3.7	0.006	0.76	0.0	0.05	14.11	0.01	2.016	9.52	0.34	5.1	94.9	0.0	-0.27	1.64	0.80	0.81	1.93	30960	3757	10	0	160	0	0	logfile
✔	6DSo	8910	2021-10-03	2018-06-14	3.0	3.30	2.98	3.4	0.009	0.94	0.0	0.06	7.35	0.00	2.431	1.53	0.00	3.2	96.8	0.0	-4.46	0.49	0.81	6.10	3.3	0.010	0.85	0.0	0.05	15.85	0.00	2.179	10.78	1.04	10.9	89.1	0.0	-4.57	1.56	0.51	0.83	5.18	6588	828	12	0	0	0	0	logfile
✔	5XLo	6729	2021-10-04	2017-05-11	3.8	3.91	—	3.9	0.009	1.37	0.0	0.06	14.03	0.01	2.050	13.28	0.29	17.3	81.9	0.8	-6.02	0.58	0.63	0.55	3.9	0.020	1.73	3.0	0.05	17.35	0.01	1.597	24.20	0.22	16.5	83.1	0.4	-4.22	1.56	0.62	0.66	0.55	15413	2073	9	38	0	0	0	logfile
✔	6M1i	30048	2021-10-03	2020-02-26	3.5	3.33	—	3.2	0.008	0.97	0.0	0.06	15.40	0.01	2.210	8.41	0.32	7.1	92.9	0.0	-4.80	0.83	0.80	1.81	3.2	0.004	0.77	0.0	0.04	16.65	0.01	2.138	11.93	0.63	3.9	96.1	0.0	-1.10	1.34	0.82	0.79	1.12	8916	1126	6	0	0	0	0	logfile
✔	5N9Y	3605	2021-10-04	2017-02-27	4.2	4.37	—	4.2	0.008	1.29	0.0	0.07	12.87	0.01	2.233	12.59	2.02	8.3	91.7	0.0	-5.18	0.79	0.82	—	4.2	0.004	0.89	0.0	0.05	13.14	0.01	2.113	19.77	0.00	5.4	94.6	0.0	-0.80	1.69	0.78	0.81	—	12835	1635	5	0	0	0	0	logfile
✔	6oG3	20051	2021-10-03	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.004	0.91	0.0	0.00	7.17	0.00	2.622	30.38	0.00	6.5	93.5	0.0	-0.51	2.18	0.67	0.85	—	1215	396	4	0	9	0	0	logfile
✔	5M5Y	3448	2021-10-06	2016-10-23	4.0	4.14	—	4.1	0.003	0.69	3.0	0.05	12.64	0.00	1.385	12.73	1.65	5.5	94.3	0.2	-4.51	0.74	0.68	—	4.1	0.010	1.07	2.0	0.05	16.56	0.01	1.912	25.35	0.30	9.6	90.3	0.1	-2.49	1.61	0.78	0.74	—	34104	4161	22	51	6	0	0	logfile
✔	5G2Y	3332	2021-10-04	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	11.90	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.01	0.0	0.05	23.93	0.01	1.976	72.56	0.00	0.0	0.0	0.0	—	3.28	0.90	0.79	—	13494	0	1	630	0	0	0	logfile
✘	6E14	8953	2021-10-03	2018-07-09	4.0	4.06	—	4.3	0.006	1.37	0.0	0.06	9.49	0.01	2.345	3.90	0.23	4.7	95.0	0.3	-3.72	0.63	0.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11995	1586	5	0	0	0	0	logfile
✔	5ZQZ	6940	2021-10-04	2018-04-20	4.2	4.24	—	4.2	0.009	1.41	0.0	0.07	14.22	0.01	2.202	8.99	3.84	12.2	87.3	0.5	-4.96	0.78	0.80	—	4.2	0.003	0.83	0.0	0.05	13.15	0.00	2.232	13.76	0.05	9.1	90.8	0.0	-2.16	1.56	0.77	0.78	—	17174	2262	4	0	0	0	0	logfile
✔	3J6J	5925	2021-10-04	2014-03-13	3.64	4.17	—	3.9	0.007	1.41	0.0	0.06	15.90	0.00	1.578	32.19	6.10	4.1	95.0	0.9	-1.46	0.86	0.83	1.23	3.9	0.005	1.05	0.0	0.05	17.92	0.01	2.115	24.90	1.16	2.9	96.8	0.3	0.01	2.62	0.89	0.88	1.40	6344	776	8	0	0	0	0	logfile
✔	5LEG	4042	2021-10-07	2016-06-29	3.6	3.32	—	3.8	0.012	1.91	0.0	0.05	18.58	0.00	2.383	42.96	0.00	8.2	91.8	0.0	-5.72	0.71	0.75	3.43	3.3	0.003	0.73	0.0	0.04	16.40	0.00	2.144	10.29	0.46	4.4	95.6	0.0	-0.99	1.57	0.71	0.83	1.84	41355	5040	155	0	75	0	0	logfile

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