Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6oEU	7795	2021-08-07	2019-03-27	3.5	3.62	—	3.9	0.014	1.89	3.0	0.11	15.00	0.00	2.157	5.92	0.85	10.3	89.6	0.1	-3.81	0.41	0.65	1.69	3.7	0.003	0.68	0.0	0.04	16.82	0.01	2.237	10.45	0.14	7.4	92.6	0.0	-0.20	1.54	0.47	0.69	1.07	7310	964	1	0	8	0	0	logfile
✔	6JPF	6822	2021-08-07	2019-03-26	3.52	3.88	3.59	3.8	0.005	0.75	0.0	0.05	14.35	0.01	2.259	19.89	4.55	5.5	94.0	0.5	-3.54	0.54	0.78	2.38	3.8	0.005	0.92	0.0	0.05	16.44	0.01	2.200	23.82	0.93	6.4	93.6	0.0	-0.44	1.29	0.56	0.75	0.74	9588	1220	2	0	0	0	0	logfile
✔	3JD4	6633	2021-08-09	2016-03-28	3.4	3.40	—	3.4	0.009	1.01	0.0	0.05	10.90	0.00	2.157	15.33	0.00	6.8	93.0	0.2	-4.82	0.80	0.86	3.90	3.4	0.003	0.62	0.0	0.04	16.19	0.00	2.050	11.90	0.20	3.0	97.0	0.0	0.76	0.79	0.80	0.87	2.04	24054	2982	12	0	18	0	0	logfile
✔	5LMQ	4076	2021-08-08	2016-08-01	4.2	4.46	4.25	4.2	0.009	1.44	30.0	0.12	20.82	0.01	1.387	19.31	21.46	10.5	86.1	3.4	-2.56	0.80	0.76	—	4.2	0.005	0.77	0.0	0.04	16.86	0.01	1.872	31.20	0.09	8.8	90.7	0.5	-1.33	1.65	0.84	0.85	—	55841	2635	29	1612	66	0	0	logfile
✔	6H5i	0140	2021-08-08	2018-07-24	3.9	3.87	—	23.0	0.006	0.84	0.0	0.05	10.47	0.01	2.196	2.63	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.8	0.009	0.96	2.0	0.04	15.32	0.01	2.068	16.19	0.04	3.8	96.2	0.0	1.44	1.32	0.38	0.26	0.08	43900	5392	26	0	0	0	0	logfile
✔	6VAL	21142	2021-08-09	2019-12-17	3.87	4.25	—	4.2	0.005	0.74	0.0	0.04	14.40	0.00	2.052	9.20	1.02	6.0	94.0	0.0	-3.34	0.66	0.73	2.18	4.2	0.003	0.66	0.0	0.04	16.94	0.00	2.185	5.64	0.93	2.5	97.5	0.0	1.57	2.46	0.68	0.79	1.69	21615	2827	11	0	0	0	0	logfile
✔	6E9F	9014	2021-08-07	2018-08-01	3.3	3.57	3.34	3.5	0.011	1.13	0.0	0.07	12.77	0.01	1.872	10.69	0.00	8.1	91.9	0.0	-5.59	0.66	0.81	3.51	3.5	0.005	0.74	0.0	0.04	15.82	0.00	2.047	12.98	0.39	5.3	94.7	0.0	-1.24	1.17	0.68	0.84	2.48	8745	864	4	79	1	0	0	logfile
✔	3JD3	6632	2021-08-09	2016-03-28	3.6	3.38	—	3.5	0.010	1.01	0.0	0.06	11.34	0.01	2.125	18.11	0.00	10.7	89.3	0.0	-5.32	0.81	0.80	2.72	3.2	0.003	0.66	0.0	0.04	15.33	0.00	2.122	11.90	0.16	3.6	96.4	0.0	-0.33	1.05	0.81	0.83	1.84	24006	2976	12	0	18	0	0	logfile
✔	5U1D	8482	2021-08-07	2016-11-28	3.97	4.06	—	4.3	0.007	1.17	0.0	0.05	12.05	0.00	2.452	0.07	0.84	5.7	94.1	0.2	-2.16	0.36	0.48	1.30	4.3	0.004	0.80	0.0	0.04	16.17	0.00	2.139	15.07	1.35	4.6	95.3	0.1	0.98	1.36	0.53	0.75	1.16	7815	1168	3	0	0	0	0	logfile
✔	6DU8	8912	2021-08-08	2018-06-20	3.11	3.84	—	3.8	0.007	1.14	0.0	0.08	12.54	0.01	2.046	7.99	0.89	8.8	91.2	0.0	-4.81	0.39	0.59	3.01	3.8	0.004	0.81	0.0	0.05	15.43	0.00	2.069	12.21	1.04	8.3	91.7	0.0	-1.87	0.65	0.42	0.64	2.23	13380	1684	8	0	4	0	0	logfile
✔	6NY1	8994	2021-08-07	2019-02-10	4.2	4.56	—	4.3	0.007	1.11	0.0	0.06	21.20	0.01	2.099	9.57	0.33	18.6	81.0	0.4	-4.84	0.80	0.80	—	4.4	0.004	0.77	0.0	0.04	20.17	0.00	2.106	19.71	0.00	18.0	81.9	0.1	-2.61	1.07	0.80	0.79	—	9911	783	4	154	121	0	0	logfile
✔	5oFo	3776	2021-08-10	2017-07-11	4.6	4.87	4.51	4.6	0.009	1.24	0.0	0.06	12.52	0.01	2.219	14.12	0.92	5.4	94.4	0.2	-3.79	0.70	0.58	—	4.6	0.003	0.70	0.0	0.04	13.44	0.00	2.081	18.08	0.00	3.8	96.2	0.0	0.15	3.21	0.86	0.83	—	32993	4116	12	0	11	0	0	logfile
✔	5A7A	3074	2021-08-08	2015-07-03	4.1	3.87	—	3.9	0.008	1.83	0.0	0.09	20.18	0.01	1.270	102.99	3.97	7.0	93.0	0.0	-3.08	0.56	0.76	—	3.9	0.006	1.01	2.0	0.05	17.13	0.01	2.106	20.82	0.08	9.2	90.8	0.0	-1.96	1.43	0.55	0.76	—	158894	18550	212	318	0	0	0	logfile
✔	6UZ0	20949	2021-08-07	2019-11-14	3.24	3.60	—	3.6	0.018	1.18	5.0	0.15	19.55	0.01	0.584	27.36	2.73	7.5	91.5	1.0	-2.63	0.48	0.76	1.87	3.6	0.005	0.81	0.0	0.04	18.16	0.01	2.146	14.49	1.36	7.5	92.3	0.3	-0.43	0.68	0.47	0.77	1.46	9557	1138	1	0	26	0	0	logfile
✔	6VD7	21150	2021-08-08	2019-12-23	3.02	3.29	—	3.3	0.008	0.76	0.0	0.05	13.38	0.00	2.284	5.96	0.78	11.7	88.3	0.0	-2.54	0.69	0.85	2.53	3.3	0.004	0.67	0.0	0.04	15.54	0.00	2.181	7.11	0.11	7.7	92.3	0.0	0.54	0.44	0.68	0.85	2.36	16506	2079	7	0	0	0	0	logfile
✔	5VC7	8658	2021-08-09	2017-03-31	3.9	4.38	—	4.3	0.007	1.49	0.0	0.07	11.03	0.01	1.173	115.32	7.14	1.5	98.2	0.4	-1.98	0.77	0.72	1.21	4.3	0.004	0.85	0.0	0.05	14.94	0.01	2.089	13.50	0.43	3.0	97.0	0.0	0.02	1.04	0.79	0.81	0.51	23298	3264	12	0	12	0	0	logfile
✔	6NR4	0489	2021-08-09	2019-01-22	4.3	4.39	4.24	4.3	0.006	0.93	0.0	0.05	9.96	0.01	2.319	3.34	0.39	4.7	95.3	0.0	-3.24	0.60	0.77	—	4.3	0.004	0.66	0.0	0.04	11.90	0.00	2.137	8.68	0.00	4.7	95.3	0.0	1.78	0.80	0.61	0.78	—	23264	3036	4	0	180	0	0	logfile
✔	6oo4	20145	2021-08-08	2019-04-22	3.3	3.45	3.23	3.5	0.033	1.25	0.0	0.23	9.25	0.01	1.858	2.96	0.00	3.4	96.6	0.0	-2.86	0.47	0.64	4.17	3.4	0.005	1.16	0.0	0.11	12.31	0.01	1.768	8.32	0.12	2.9	97.1	0.0	-1.02	0.39	0.71	0.86	3.86	18452	2440	8	0	4	0	0	logfile
✔	6MLM	9139	2021-08-08	2018-09-27	3.5	3.57	3.71	3.5	0.013	1.32	0.0	0.06	11.51	0.01	2.276	2.41	0.33	3.0	96.7	0.3	0.37	0.72	0.74	2.71	3.5	0.004	0.71	0.0	0.04	16.12	0.00	2.118	14.19	0.71	6.2	93.8	0.0	-0.55	2.23	0.72	0.75	2.09	16701	2121	18	0	9	0	0	logfile
✔	6VAM	21143	2021-08-08	2019-12-17	3.63	4.11	—	4.0	0.005	0.84	0.0	0.04	14.63	0.00	2.290	9.37	0.00	7.3	92.7	0.0	-1.89	0.65	0.76	2.23	4.0	0.004	0.74	0.0	0.04	16.19	0.00	2.337	8.92	0.07	7.6	92.4	0.0	1.81	1.17	0.66	0.80	2.05	13360	1712	8	0	0	0	0	logfile

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