Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oi9	12922	2022-04-08	2021-05-11	3.3	3.23	—	3.2	0.004	0.87	1.0	0.05	15.16	0.01	1.574	6.28	0.06	3.9	96.0	0.0	-1.37	0.72	0.73	2.41	3.2	0.003	0.65	0.0	0.04	16.34	0.01	1.977	11.18	0.28	3.8	96.2	0.0	-0.03	0.50	0.73	0.75	2.12	90599	8105	60	1148	52	0	0	logfile
✔	7P6C	13225	2022-04-04	2021-07-15	2.5	2.04	2.40	2.2	0.005	0.80	0.0	0.06	15.34	0.00	2.284	2.77	0.43	2.8	97.2	0.0	-3.05	0.43	0.86	7.56	2.2	0.005	0.72	0.0	0.05	17.16	0.00	2.203	5.95	0.86	3.5	96.5	0.0	-2.59	0.96	0.45	0.89	7.28	8120	1080	10	0	0	0	0	logfile
✔	7oiA	12923	2022-04-08	2021-05-11	3.2	3.09	—	3.1	0.004	0.87	0.0	0.05	15.53	0.01	2.057	5.97	0.03	3.7	96.3	0.0	-1.18	0.73	0.77	2.82	3.1	0.004	0.62	0.0	0.04	16.59	0.01	1.858	9.83	0.42	3.9	96.1	0.0	0.22	0.42	0.75	0.79	2.49	90275	7882	57	1221	51	0	0	logfile
✔	7AWT	11930	2022-04-06	2020-11-09	2.73	3.29	—	3.2	0.012	1.12	8.0	1.95	14.80	0.01	1.618	18.60	1.58	8.0	92.0	0.0	-3.38	0.67	0.74	3.45	3.2	0.015	2.82	0.0	0.58	16.53	0.00	2.059	9.85	2.03	5.5	94.5	0.0	-1.03	1.19	0.64	0.70	3.03	18891	2375	17	0	18	125	0	logfile
✔	7FD9	31537	2022-04-05	2021-07-16	4.0	4.34	3.85	3.8	0.007	1.29	0.0	0.13	12.17	0.00	2.266	9.05	0.00	6.4	93.6	0.0	-0.84	0.71	0.80	—	3.8	0.003	0.62	0.0	0.04	14.34	0.00	2.214	11.11	0.09	5.7	94.3	0.0	-0.25	0.99	0.72	0.82	—	11476	1534	4	0	4	0	0	logfile
✔	7LMY	23442	2022-04-08	2021-02-06	2.4	3.32	2.45	2.9	0.007	0.89	0.0	0.04	14.40	0.01	1.987	8.17	1.89	2.7	97.3	0.0	0.96	0.80	0.76	3.08	3.0	0.005	0.56	0.0	0.04	14.65	0.00	1.903	7.42	0.42	2.7	97.3	0.0	1.57	1.19	0.87	0.87	2.98	35646	4470	12	0	30	0	0	logfile
✔	7RAS	24385	2022-04-06	2021-07-02	3.64	4.18	—	4.1	0.010	1.33	0.0	0.05	11.68	0.01	2.283	4.29	1.11	6.3	93.2	0.5	-6.09	0.67	0.82	2.35	4.1	0.002	0.75	0.0	0.04	15.12	0.00	2.199	11.82	0.19	4.5	95.4	0.1	-0.34	0.81	0.68	0.82	1.58	20000	2440	8	0	8	0	0	logfile
✔	7oiB	12924	2022-04-08	2021-05-11	3.3	3.27	—	3.2	0.004	0.86	0.0	0.05	15.29	0.01	2.019	6.11	0.03	3.8	96.2	0.0	-1.30	0.76	0.81	2.48	3.2	0.003	0.63	0.0	0.04	16.58	0.00	1.878	11.63	0.48	3.8	96.2	0.0	0.03	0.49	0.78	0.83	2.35	88360	7838	56	1148	51	0	0	logfile
✔	7LN5	23449	2022-04-08	2021-02-06	3.09	3.65	3.09	3.1	0.013	0.67	0.0	0.04	14.50	0.01	2.010	10.02	0.03	1.6	98.4	0.0	1.09	0.80	0.74	2.04	3.1	0.003	0.57	0.0	0.04	15.51	0.00	1.893	10.25	0.13	2.1	97.9	0.0	1.74	1.63	0.88	0.85	1.81	35051	4425	13	0	41	0	0	logfile
✔	7LN3	23447	2022-04-08	2021-02-06	3.45	4.37	3.48	3.7	0.005	0.67	0.0	0.04	13.58	0.01	1.950	10.73	0.00	1.8	98.2	0.1	1.48	0.74	0.61	1.16	3.7	0.003	0.62	0.0	0.04	14.52	0.00	1.908	12.69	0.13	1.9	98.0	0.1	1.90	0.60	0.88	0.81	0.96	34920	4409	13	0	41	0	0	logfile
✔	7LN2	23446	2022-04-08	2021-02-06	3.63	4.55	3.68	3.6	0.004	0.65	0.0	0.04	13.47	0.00	1.983	11.36	0.00	1.6	98.3	0.1	1.50	0.73	0.58	0.81	3.7	0.002	0.62	0.0	0.04	14.54	0.00	1.923	12.37	0.05	2.1	97.8	0.1	1.92	1.24	0.90	0.85	0.73	34941	4411	13	0	41	0	0	logfile
✔	7LN4	23448	2022-04-08	2021-02-06	3.0	3.91	3.03	3.5	0.009	0.65	0.0	0.04	12.72	0.01	2.019	7.50	0.03	2.1	97.9	0.0	1.49	0.80	0.71	1.59	3.5	0.013	0.78	0.0	0.04	14.13	0.01	1.820	9.68	0.59	2.8	97.1	0.0	1.91	0.57	0.85	0.81	1.52	35094	4432	13	0	42	0	0	logfile
✔	7LN1	23445	2022-04-08	2021-02-06	3.4	3.94	3.48	3.1	0.006	0.76	0.0	0.05	14.08	0.01	1.912	14.50	0.00	2.6	97.3	0.0	0.59	0.77	0.69	1.50	3.2	0.005	0.64	0.0	0.04	15.05	0.00	1.807	12.85	0.11	2.7	97.3	0.0	1.48	0.52	0.89	0.85	1.47	34796	4402	13	0	28	0	0	logfile
✔	7LMZ	23443	2022-04-08	2021-02-06	3.06	3.60	3.20	3.0	0.004	0.65	0.0	0.04	13.05	0.01	1.978	12.37	0.00	1.6	98.3	0.1	1.04	0.79	0.72	2.20	3.1	0.003	0.58	0.0	0.04	14.48	0.00	1.931	11.54	0.11	2.1	97.8	0.0	1.57	0.60	0.87	0.83	1.93	34994	4425	13	0	29	0	0	logfile
✔	7LN0	23444	2022-04-08	2021-02-06	2.98	3.50	3.07	2.9	0.003	0.64	0.0	0.04	13.02	0.01	2.018	11.99	0.03	1.8	98.2	0.0	0.89	0.80	0.74	2.17	3.0	0.003	0.62	1.0	0.04	14.81	0.00	1.878	12.08	0.86	2.3	97.7	0.0	1.52	0.59	0.88	0.85	2.02	34983	4425	13	0	28	0	0	logfile
✔	7LN6	23450	2022-04-08	2021-02-06	3.58	3.85	3.59	3.3	0.015	0.82	0.0	0.04	14.72	0.01	1.989	10.99	0.03	2.6	97.3	0.0	0.78	0.73	0.67	1.23	3.4	0.006	0.67	0.0	0.04	15.81	0.00	1.815	13.88	0.13	3.3	96.7	0.0	1.28	1.23	0.86	0.84	1.28	35072	4433	13	0	42	0	0	logfile
✔	7oiC	12925	2022-04-09	2021-05-11	3.1	3.04	—	3.0	0.014	1.27	1.0	0.07	17.05	0.01	1.916	8.13	0.13	7.7	92.2	0.1	-1.98	0.75	0.78	2.96	3.0	0.005	0.76	0.0	0.04	17.36	0.01	1.845	13.02	0.19	6.8	93.1	0.0	-0.36	0.34	0.76	0.80	2.28	100859	8614	67	1441	81	0	0	logfile
✔	7oi8	12921	2022-04-08	2021-05-11	3.5	3.27	—	3.2	0.006	0.99	1.0	0.05	16.00	0.01	1.998	7.06	0.03	4.8	95.1	0.0	-1.78	0.75	0.78	2.56	3.2	0.010	0.88	0.0	0.05	17.12	0.01	1.757	13.37	0.82	6.2	93.8	0.0	-0.82	0.46	0.75	0.79	2.35	92769	8181	60	1221	52	0	0	logfile
✔	7oi7	12920	2022-04-08	2021-05-11	3.5	3.35	—	3.3	0.006	0.95	1.0	0.05	15.02	0.01	2.041	6.91	0.10	4.3	95.7	0.0	-1.48	0.73	0.75	2.42	3.3	0.007	0.75	0.0	0.04	16.33	0.01	1.616	15.19	0.35	4.3	95.6	0.0	-0.32	0.49	0.73	0.75	2.13	89747	8101	60	1110	52	0	0	logfile
✔	7oiE	12927	2022-04-09	2021-05-11	3.5	3.25	—	3.2	0.016	1.44	1.0	0.08	17.11	0.01	2.055	8.12	0.03	6.6	93.3	0.0	-2.20	0.72	0.75	3.05	3.2	0.006	0.73	0.0	0.04	17.46	0.01	1.969	12.09	0.57	5.4	94.6	0.0	-0.57	0.42	0.71	0.74	2.27	99578	8217	60	1528	5	0	0	logfile

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