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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6M67 | 30115 | 2024-03-16 | 2020-03-13 | 3.6 | 3.14 | — | 4.0 | 0.006 | 1.14 | 0.0 | 0.06 | 14.95 | 0.01 | 2.247 | 6.79 | 0.00 | 10.3 | 89.7 | 0.0 | -4.86 | 0.54 | 0.64 | 1.39 | 3.9 | 0.003 | 0.80 | 0.0 | 0.04 | 17.17 | 0.00 | 2.037 | 16.58 | 4.51 | 9.1 | 90.9 | 0.0 | -1.28 | 0.76 | 0.54 | 0.64 | 1.05 | 14938 | 1855 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FWU | 29519 | 2024-03-16 | 2023-01-23 | 3.18 | 3.47 | 3.21 | 3.5 | 0.036 | 2.60 | 0.0 | 0.12 | 20.01 | 0.01 | 2.254 | 5.53 | 0.97 | 9.2 | 90.6 | 0.2 | -6.02 | 0.69 | 0.80 | 2.67 | 3.5 | 0.003 | 0.96 | 0.0 | 0.05 | 17.91 | 0.00 | 1.982 | 10.51 | 2.49 | 8.3 | 91.6 | 0.1 | -0.51 | 0.68 | 0.69 | 0.84 | 2.20 | 14496 | 1680 | 17 | 0 | 52 | 6 | 0 | logfile |
✔ | 7D9U | 30621 | 2024-03-11 | 2020-10-14 | 3.8 | 3.97 | — | 3.8 | 0.004 | 0.59 | 0.0 | 0.04 | 12.32 | 0.00 | 2.187 | 8.47 | 0.12 | 3.4 | 96.5 | 0.1 | -2.11 | 0.81 | 0.82 | 2.52 | 3.8 | 0.002 | 0.60 | 0.0 | 0.04 | 14.31 | 0.00 | 1.995 | 9.90 | 1.89 | 3.1 | 96.9 | 0.0 | -0.39 | 0.57 | 0.83 | 0.83 | 2.15 | 8190 | 1075 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7TT7 | 26113 | 2024-03-16 | 2022-01-31 | 4.8 | 5.05 | — | 4.9 | 0.003 | 0.84 | 0.0 | 0.05 | 10.50 | 0.00 | 2.205 | 5.04 | 0.00 | 1.3 | 98.7 | 0.0 | 0.94 | 0.66 | 0.63 | — | 4.8 | 0.003 | 0.60 | 0.0 | 0.04 | 12.00 | 0.00 | 1.868 | 10.15 | 0.00 | 3.3 | 96.7 | 0.0 | -0.44 | 1.59 | 0.70 | 0.73 | — | 13296 | 867 | 5 | 0 | 0 | 0 | 6468 | logfile |
✔ | 6VHA | 21201 | 2024-03-10 | 2020-01-09 | 4.3 | 4.35 | — | 7.8 | 0.007 | 1.02 | 0.0 | 0.05 | 15.14 | 0.01 | 2.319 | 26.84 | 2.13 | 12.4 | 87.6 | 0.0 | -4.78 | 0.55 | 0.54 | — | 4.1 | 0.004 | 0.76 | 0.0 | 0.05 | 13.37 | 0.00 | 2.246 | 12.62 | 0.00 | 12.4 | 87.6 | 0.0 | -4.31 | 3.37 | 0.57 | 0.60 | — | 2439 | 321 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YEZ | 33779 | 2024-03-23 | 2022-07-06 | 3.4 | 4.04 | 3.50 | 3.9 | 0.008 | 1.09 | 6.0 | 0.07 | 10.87 | 0.01 | 1.398 | 7.56 | 0.30 | 8.8 | 91.1 | 0.1 | -3.92 | 0.45 | 0.78 | 1.22 | 3.9 | 0.005 | 0.81 | 4.0 | 0.05 | 15.40 | 0.01 | 1.978 | 15.47 | 3.82 | 6.9 | 93.0 | 0.0 | -0.90 | 1.65 | 0.50 | 0.86 | 1.54 | 146052 | 18531 | 28 | 0 | 6 | 0 | 0 | logfile |
✔ | 7VVo | 32146 | 2024-03-11 | 2021-11-06 | 4.1 | 2.82 | 3.93 | 4.0 | 0.014 | 1.88 | 0.0 | 0.09 | 15.54 | 0.01 | 2.158 | 9.28 | 3.81 | 4.5 | 95.5 | 0.1 | -1.84 | 0.70 | 0.74 | — | 3.9 | 0.003 | 0.64 | 0.0 | 0.04 | 13.90 | 0.00 | 2.108 | 12.73 | 0.00 | 3.8 | 96.2 | 0.0 | 0.24 | 0.64 | 0.69 | 0.69 | — | 7942 | 1059 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EiR | 28162 | 2024-03-10 | 2022-09-15 | 2.49 | 3.15 | 2.50 | 3.0 | 0.005 | 0.81 | 0.0 | 0.05 | 16.40 | 0.01 | 1.960 | 4.05 | 2.61 | 2.2 | 97.4 | 0.3 | -1.27 | 0.86 | 0.84 | 4.26 | 3.0 | 0.003 | 0.59 | 0.0 | 0.04 | 16.35 | 0.01 | 2.339 | 3.32 | 1.87 | 2.1 | 97.9 | 0.0 | -0.05 | 0.57 | 0.84 | 0.91 | 4.28 | 4870 | 632 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GYP | 0095 | 2024-03-17 | 2018-07-01 | 3.6 | 3.70 | — | 3.7 | 0.006 | 0.95 | 0.0 | 0.05 | 10.75 | 0.01 | 2.259 | 4.86 | 0.50 | 7.1 | 92.8 | 0.1 | -4.51 | 0.57 | 0.68 | 2.48 | 3.7 | 0.004 | 0.68 | 0.0 | 0.04 | 14.81 | 0.00 | 2.160 | 11.89 | 3.11 | 5.9 | 94.0 | 0.0 | -0.49 | 0.74 | 0.74 | 0.82 | 1.47 | 17811 | 2148 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Z80 | 14540 | 2024-03-23 | 2022-03-16 | 2.93 | 2.62 | — | 2.8 | 0.005 | 0.79 | 0.0 | 1.46 | 16.66 | 0.01 | 2.210 | 5.73 | 2.08 | 2.4 | 97.5 | 0.0 | -0.51 | 0.88 | 0.87 | 2.63 | 2.8 | 0.012 | 2.23 | 2.0 | 0.44 | 16.75 | 0.00 | 1.914 | 10.47 | 2.42 | 2.6 | 97.4 | 0.0 | 0.84 | 0.33 | 0.89 | 0.87 | 2.85 | 37821 | 4764 | 24 | 0 | 28 | 0 | 0 | logfile |
✔ | 8GVX | 34301 | 2024-03-22 | 2022-09-16 | 3.91 | 4.24 | — | 3.7 | 0.008 | 1.01 | 4.0 | 0.06 | 16.27 | 0.01 | 2.173 | 11.61 | 0.68 | 2.1 | 97.9 | 0.0 | -0.99 | 0.79 | 0.69 | 1.27 | 3.7 | 0.003 | 0.59 | 0.0 | 0.04 | 15.88 | 0.00 | 2.164 | 8.67 | 0.56 | 3.1 | 96.9 | 0.0 | 2.52 | 0.63 | 0.84 | 0.81 | 1.07 | 32872 | 3964 | 16 | 0 | 24 | 0 | 0 | logfile |
✔ | 6TGP | 10500 | 2024-03-10 | 2019-11-17 | 4.4 | 4.64 | — | 4.3 | 0.013 | 1.90 | 1.0 | 0.13 | 12.88 | 0.01 | 2.228 | 7.38 | 2.08 | 5.2 | 94.8 | 0.0 | -3.36 | 0.45 | 0.85 | — | 4.1 | 0.002 | 0.64 | 0.0 | 0.04 | 12.53 | 0.00 | 2.295 | 14.39 | 0.00 | 2.9 | 97.1 | 0.0 | 1.45 | 1.80 | 0.45 | 0.79 | — | 1344 | 176 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ioT | 35623 | 2024-03-19 | 2023-03-13 | 2.51 | 3.17 | 2.56 | 3.0 | 0.003 | 0.57 | 0.0 | 0.05 | 11.07 | 0.00 | 2.169 | 5.18 | 0.00 | 5.3 | 94.7 | 0.0 | 0.21 | 0.83 | 0.84 | 2.64 | 3.0 | 0.004 | 0.61 | 0.0 | 0.05 | 13.11 | 0.00 | 2.228 | 5.57 | 1.01 | 4.0 | 96.0 | 0.0 | 0.23 | 0.51 | 0.80 | 0.84 | 2.77 | 24642 | 3063 | 12 | 0 | 48 | 0 | 0 | logfile |
✔ | 7DMZ | 30775 | 2024-03-18 | 2020-12-08 | 4.3 | 4.41 | — | 4.4 | 0.009 | 1.02 | 0.0 | 0.06 | 17.32 | 0.01 | 2.063 | 7.32 | 0.74 | 5.4 | 94.6 | 0.0 | -3.24 | 0.66 | 0.80 | — | 4.4 | 0.004 | 0.70 | 0.0 | 0.05 | 15.43 | 0.01 | 1.905 | 11.32 | 0.05 | 6.8 | 93.2 | 0.0 | -1.16 | 0.66 | 0.68 | 0.80 | — | 20396 | 2562 | 12 | 0 | 11 | 0 | 0 | logfile |
✔ | 7RKH | 24497 | 2024-03-24 | 2021-07-22 | 2.8 | 2.83 | — | 2.9 | 0.014 | 1.98 | 4.0 | 0.11 | 15.27 | 0.02 | 1.917 | 0.90 | 1.64 | 2.9 | 97.1 | 0.0 | -0.45 | 0.58 | 0.73 | 3.48 | 2.8 | 0.003 | 0.55 | 0.0 | 0.05 | 17.00 | 0.00 | 1.826 | 5.25 | 2.20 | 2.8 | 97.2 | 0.0 | 0.71 | 1.32 | 0.60 | 0.79 | 3.49 | 35352 | 2236 | 8 | 0 | 16 | 0 | 17564 | logfile |
✔ | 7A92 | 11682 | 2024-03-14 | 2020-09-01 | 4.2 | 4.58 | 4.29 | 4.2 | 0.007 | 0.84 | 0.0 | 0.06 | 14.64 | 0.01 | 2.222 | 3.92 | 1.19 | 5.2 | 94.7 | 0.1 | -2.44 | 0.77 | 0.64 | — | 4.2 | 0.003 | 0.62 | 0.0 | 0.04 | 13.28 | 0.00 | 2.015 | 7.58 | 0.00 | 3.8 | 96.2 | 0.0 | -0.15 | 0.79 | 0.89 | 0.83 | — | 10040 | 1231 | 5 | 0 | 10 | 0 | 0 | logfile |
✔ | 8B3P | 15832 | 2024-03-17 | 2022-09-16 | 2.81 | 3.73 | 2.92 | 3.3 | 0.008 | 1.53 | 30.0 | 0.10 | 16.99 | 0.00 | 2.469 | 4.32 | 0.78 | 0.0 | 100.0 | 0.0 | -0.91 | 0.82 | 0.93 | 1.32 | 3.3 | 0.003 | 0.54 | 0.0 | 0.03 | 18.16 | 0.00 | 2.220 | 4.46 | 2.07 | 0.0 | 100.0 | 0.0 | 5.67 | 1.29 | 0.80 | 0.90 | 0.22 | 17620 | 2370 | 55 | 0 | 0 | 0 | 0 | logfile |
✔ | 7D9T | 30620 | 2024-03-11 | 2020-10-14 | 4.1 | 4.18 | — | 3.9 | 0.003 | 0.57 | 0.0 | 0.04 | 11.03 | 0.00 | 2.230 | 6.74 | 0.00 | 3.9 | 96.1 | 0.0 | -1.91 | 0.84 | 0.81 | — | 3.9 | 0.002 | 0.58 | 0.0 | 0.04 | 11.36 | 0.00 | 2.145 | 7.66 | 0.00 | 3.1 | 96.9 | 0.0 | 1.11 | 0.44 | 0.85 | 0.81 | — | 7451 | 1079 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 6HE7 | 0211 | 2024-03-19 | 2018-08-20 | 3.69 | 3.80 | — | 3.8 | 0.039 | 3.60 | 213.0 | 0.21 | 17.65 | 0.03 | 2.081 | 3.03 | 4.93 | 5.6 | 92.9 | 1.6 | -2.44 | 0.64 | 0.70 | 2.28 | 3.8 | 0.012 | 0.75 | 0.0 | 0.05 | 17.58 | 0.00 | 1.905 | 11.54 | 3.67 | 3.4 | 96.6 | 0.0 | -0.04 | 0.90 | 0.63 | 0.78 | 1.50 | 23821 | 3059 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PMF | 13531 | 2024-03-14 | 2021-09-02 | 3.4 | 4.29 | 3.46 | 3.3 | 0.010 | 1.00 | 1.0 | 0.06 | 15.34 | 0.01 | 1.313 | 3.78 | 0.09 | 0.2 | 99.8 | 0.0 | -1.44 | 0.91 | 0.83 | 3.07 | 3.3 | 0.004 | 0.64 | 0.0 | 0.04 | 15.11 | 0.00 | 1.944 | 7.01 | 0.65 | 1.6 | 98.4 | 0.0 | 1.78 | 1.29 | 0.94 | 0.88 | 2.36 | 10125 | 1256 | 6 | 0 | 6 | 0 | 0 | logfile |