Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6oUA	20200	2022-11-29	2019-05-04	4.18	4.32	—	4.3	0.008	1.37	1.0	0.07	13.97	0.01	2.294	7.13	2.35	17.4	82.3	0.3	-5.89	0.72	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5208	637	3	0	0	0	0	logfile
✔	3JBS	6478	2022-11-29	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.1	0.003	0.63	0.0	0.04	17.65	0.00	2.262	7.24	1.97	1.7	98.3	0.0	1.01	1.32	0.21	0.81	3.18	1401	175	1	0	0	0	0	logfile
✔	6CoZ	7545	2022-11-29	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.82	0.0	0.04	4.96	0.00	2.368	4.42	0.00	8.3	91.7	0.0	-1.63	1.58	0.82	0.76	—	1586	320	2	0	0	0	0	logfile
✔	6HRF	0260	2022-11-29	2018-09-26	3.3	3.38	2.95	3.5	0.016	1.25	0.0	0.09	13.68	0.01	2.627	8.66	0.00	13.3	86.7	0.0	-4.08	0.38	0.74	2.93	3.5	0.005	0.84	0.0	0.05	16.58	0.00	2.181	9.08	0.25	6.7	93.3	0.0	-3.41	3.72	0.37	0.78	3.35	3522	462	6	0	0	0	0	logfile
✔	6MRT	9212	2022-11-29	2018-10-15	2.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26868	3420	12	0	0	0	0	logfile
✔	6UKJ	20806	2022-11-29	2019-10-05	3.3	3.53	3.32	3.4	0.007	0.91	0.0	0.05	13.71	0.01	2.114	6.29	0.79	4.5	95.1	0.3	-3.21	0.62	0.81	3.08	3.4	0.003	0.64	0.0	0.04	16.04	0.00	2.145	11.17	0.20	3.8	96.2	0.0	0.14	1.54	0.64	0.83	2.29	4625	582	4	0	1	0	0	logfile
✔	6RiU	4898	2022-11-29	2019-04-25	3.9	6.21	2.04	7.0	0.008	1.19	0.0	0.09	15.19	0.01	2.182	5.20	0.00	8.4	91.6	0.0	-5.77	0.59	0.69	0.56	7.1	0.003	0.67	0.0	0.03	16.53	0.00	2.057	13.17	0.00	5.1	94.9	0.0	-0.39	1.43	0.61	0.75	1.30	2882	182	2	0	0	0	1430	logfile
✘	5X1G	6701	2022-11-29	2017-01-25	4.5	7.89	—	37.0	0.008	1.42	0.0	0.05	10.05	0.01	2.345	27.78	0.00	6.9	93.1	0.0	-2.75	0.00	0.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	155	31	1	0	0	0	0	logfile
✔	5M6S	3451	2022-11-29	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	24.50	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.3	0.003	0.59	0.0	0.03	18.68	0.00	2.007	8.17	0.00	5.2	94.8	0.0	2.82	2.46	0.03	0.06	—	1593	98	1	0	0	0	793	logfile
✘	5A7U	3079	2022-11-29	2015-07-10	4.8	3.82	—	4.6	0.020	3.41	3.0	0.25	21.78	0.08	2.651	30.77	25.00	24.0	72.0	4.0	-6.05	-0.01	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	1	0	1	0	231	logfile
✔	5WQ8	6676	2022-11-29	2016-11-23	3.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	56460	7440	15	0	0	0	0	logfile
✘	7CKR	30391	2022-11-29	2020-07-18	3.0	3.32	—	3.4	0.009	1.22	9.0	0.09	17.22	0.01	1.896	18.48	11.04	8.0	91.9	0.2	-2.89	0.45	0.60	2.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4094	597	3	0	1	0	0	logfile
✔	6F1Y	4171	2022-11-29	2017-11-23	3.4	4.18	—	3.6	0.011	1.94	0.0	0.09	11.72	0.01	2.069	14.38	0.74	17.2	82.6	0.2	-4.92	0.50	0.74	0.93	3.6	0.004	0.88	0.0	0.04	15.64	0.00	2.238	16.71	0.49	9.8	90.2	0.0	-1.19	2.15	0.50	0.76	0.93	4316	472	2	0	111	0	0	logfile
✔	6F1V	4170	2022-11-29	2017-11-23	3.4	4.10	—	3.7	0.014	1.86	0.0	0.09	11.72	0.01	2.246	13.29	0.18	11.1	88.7	0.2	-3.46	0.46	0.69	0.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5164	628	2	0	0	0	0	logfile
✔	6F1Z	4172	2022-11-29	2017-11-23	3.4	4.16	—	3.4	0.004	0.97	0.0	0.06	11.17	0.01	2.264	12.14	0.81	8.6	91.4	0.0	-4.21	0.64	0.68	-1.41	3.4	0.004	1.01	0.0	0.05	16.44	0.01	2.105	24.74	0.81	7.8	92.2	0.0	-1.37	1.33	0.66	0.75	-0.09	2138	265	4	0	0	0	0	logfile
✔	5MS1	3562	2022-11-29	2016-12-29	4.25	4.22	—	4.2	0.014	1.51	0.0	0.07	9.30	0.01	2.413	2.10	0.00	5.5	93.5	1.1	-0.81	0.37	0.76	—	4.2	0.005	0.73	0.0	0.05	13.10	0.00	2.107	11.88	0.00	4.9	95.1	0.0	-0.60	1.53	0.46	0.85	—	4350	556	2	0	0	0	0	logfile
✔	6FU8	4319	2022-11-29	2018-02-26	3.2	4.43	2.97	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.003	0.82	0.0	0.04	14.91	0.00	2.261	15.40	0.00	10.0	88.8	1.2	-1.84	3.11	0.23	0.62	-0.89	1364	82	1	0	0	0	711	logfile
✔	6RDK	4821	2022-11-29	2019-04-12	3.7	3.64	—	3.7	0.006	0.91	0.0	0.06	14.09	0.01	2.103	6.44	0.44	4.9	94.9	0.2	-4.35	0.70	0.82	2.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53748	7103	37	0	11	0	0	logfile
✘	6YV1	10940	2022-11-29	2020-04-27	3.4	4.09	3.01	3.7	0.002	0.58	0.0	0.04	12.66	0.00	2.272	8.02	1.85	1.0	99.0	0.0	-4.45	0.52	0.76	1.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2496	328	1	0	0	0	0	logfile
✔	6MLU	9146	2022-11-29	2018-09-28	4.0	4.03	—	4.0	0.005	1.05	0.0	0.06	9.86	0.01	2.406	5.97	0.69	10.6	89.4	0.0	-4.38	0.40	0.78	—	4.0	0.005	1.09	0.0	0.06	17.93	0.01	2.175	31.42	2.78	12.9	87.1	0.0	-2.60	3.41	0.44	0.77	—	2516	306	2	0	0	0	0	logfile

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