Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6oPC	20149	2021-09-05	2019-04-24	3.7	4.08	—	3.7	0.010	1.05	4.0	0.06	14.10	0.02	1.515	5.04	0.09	8.2	91.1	0.7	-4.20	0.79	0.71	1.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30015	4455	13	0	48	0	0	logfile
✔	6oo2	20142	2021-09-03	2019-04-22	4.4	4.52	—	3.5	0.007	1.14	1.0	0.07	13.96	0.01	2.037	6.87	0.00	7.1	92.3	0.6	-3.55	0.75	0.61	—	2.5	0.003	0.67	0.0	0.04	13.03	0.00	0.991	12.23	0.00	4.1	95.9	0.0	2.10	1.10	0.86	0.80	—	16691	2436	24	0	19	0	0	logfile
✔	6oS9	20180	2021-09-03	2019-05-01	3.0	3.41	—	3.4	0.010	1.09	0.0	0.06	10.14	0.01	2.240	5.23	0.21	4.9	95.1	0.0	-2.70	0.67	0.81	3.39	3.4	0.004	0.74	0.0	0.04	15.50	0.00	2.132	12.03	2.48	3.1	96.9	0.0	0.29	1.33	0.66	0.82	2.72	8969	1152	6	0	0	0	0	logfile
✔	6KZo	0791	2021-09-02	2019-09-25	3.3	3.57	—	3.5	0.019	1.74	3.0	0.21	16.02	0.01	2.196	35.83	9.01	3.3	96.0	0.7	-1.32	0.60	0.82	2.55	3.5	0.014	1.32	1.0	0.04	16.57	0.00	2.103	10.59	0.47	3.6	96.3	0.1	0.39	1.33	0.61	0.83	2.07	8238	967	1	0	22	0	0	logfile
✔	6C9Y	7438	2021-09-05	2018-01-29	4.25	4.33	—	9.7	0.008	1.53	5.0	0.08	13.66	0.01	2.064	6.64	5.32	7.8	90.7	1.5	-4.02	0.50	0.13	—	4.1	0.003	0.83	0.0	0.04	13.51	0.01	2.066	18.14	0.03	6.0	94.0	0.0	-1.52	2.88	0.66	0.51	—	28920	3685	7	0	3	0	0	logfile
✔	6NBH	0411	2021-09-02	2018-12-07	3.5	4.06	—	4.0	0.022	1.01	0.0	0.52	8.69	0.00	2.357	1.73	0.20	2.6	97.4	0.0	-1.51	0.62	0.76	1.73	4.0	0.004	1.18	0.0	0.16	16.06	0.01	2.200	17.14	0.20	2.7	97.3	0.0	0.66	1.44	0.59	0.76	1.24	9502	1159	7	0	10	0	0	logfile
✔	5U6P	8512	2021-09-03	2016-12-08	3.51	3.56	—	3.5	0.007	1.40	0.0	0.07	12.41	0.01	2.399	2.05	0.00	3.2	96.8	0.0	1.31	0.45	0.53	2.72	3.5	0.009	0.99	1.0	0.04	16.31	0.00	2.151	8.42	0.78	2.5	97.5	0.0	2.39	0.69	0.67	0.83	2.57	15640	2016	12	0	80	0	0	logfile
✔	6J8G	9781	2021-09-03	2019-01-19	3.2	3.35	—	3.3	0.010	1.52	1.0	0.10	21.71	0.01	1.886	57.59	27.17	2.0	96.6	1.3	2.85	0.60	0.78	1.54	3.3	0.005	0.74	0.0	0.04	18.47	0.00	2.144	8.16	0.85	4.1	95.6	0.3	0.75	0.82	0.64	0.85	2.03	11763	1433	6	0	12	0	0	logfile
✔	6FEQ	4246	2021-09-03	2018-01-03	3.6	3.83	—	3.7	0.010	1.02	0.0	0.06	10.52	0.01	2.271	4.75	0.15	5.8	94.2	0.0	-4.17	0.66	0.83	3.20	3.7	0.002	0.67	0.0	0.04	13.47	0.00	2.169	9.19	0.15	4.7	95.3	0.0	0.60	1.32	0.67	0.83	2.70	12397	1582	8	0	3	0	0	logfile
✔	6HRA	0257	2021-09-03	2018-09-26	3.7	3.89	3.68	3.8	0.007	0.93	0.0	0.05	9.85	0.01	2.227	6.64	0.18	7.4	92.6	0.0	-5.34	0.70	0.83	2.52	3.8	0.004	0.72	0.0	0.04	14.17	0.00	2.105	13.01	0.62	5.5	94.5	0.0	-0.61	1.66	0.71	0.85	1.05	10818	1450	5	0	3	0	0	logfile
✔	6J8i	9782	2021-09-03	2019-01-19	3.2	3.36	—	3.3	0.013	1.50	0.0	0.11	21.92	0.01	1.829	69.35	28.73	2.5	96.2	1.3	2.78	0.59	0.76	1.66	3.4	0.003	0.70	0.0	0.04	17.97	0.00	2.149	10.02	0.39	3.9	96.0	0.1	0.75	1.46	0.61	0.82	1.88	11764	1433	6	0	12	0	0	logfile
✔	6J8J	9782	2021-09-03	2019-01-19	3.2	3.36	—	3.3	0.013	1.50	0.0	0.11	21.93	0.01	1.829	69.02	28.80	2.5	96.2	1.3	2.79	0.59	0.76	1.66	3.4	0.003	0.70	0.0	0.04	17.86	0.00	2.147	10.02	0.39	3.9	95.9	0.2	0.81	1.47	0.61	0.82	1.74	11764	1433	6	0	12	0	0	logfile
✔	6oSA	20181	2021-09-02	2019-05-01	3.0	3.37	—	3.3	0.008	1.08	0.0	0.06	11.09	0.01	2.210	4.44	0.00	3.5	96.5	0.0	-2.75	0.62	0.78	3.28	3.4	0.003	0.72	0.0	0.04	16.25	0.00	2.129	10.39	3.01	3.6	96.4	0.0	0.76	1.68	0.64	0.80	2.11	7338	937	5	0	0	0	0	logfile
✔	6U1N	20612	2021-09-02	2019-08-16	4.0	4.36	—	4.0	0.009	0.88	0.0	0.04	12.29	0.00	2.198	17.90	0.00	7.8	92.2	0.0	-4.67	0.84	0.82	—	4.0	0.005	0.76	0.0	0.04	13.59	0.00	2.156	14.39	0.65	5.6	94.4	0.0	-0.67	0.55	0.84	0.82	—	5863	864	5	0	1	0	0	logfile
✔	6C96	7434	2021-09-03	2018-01-25	3.4	3.54	—	3.5	0.009	1.04	0.0	0.06	10.46	0.01	2.277	3.50	0.30	5.1	94.9	0.0	-4.38	0.58	0.82	3.11	3.5	0.003	0.67	0.0	0.04	15.63	0.00	2.062	7.41	0.53	4.5	95.5	0.0	1.09	0.79	0.60	0.84	1.72	12090	1446	4	0	8	0	0	logfile
✔	6Q2J	20572	2021-09-03	2019-08-08	4.1	4.32	—	4.1	0.006	0.98	0.0	0.06	8.65	0.01	1.677	4.24	0.13	5.0	94.8	0.1	-3.22	0.52	0.28	—	4.2	0.005	0.85	0.0	0.05	11.87	0.00	2.185	10.40	0.00	5.0	95.0	0.0	-1.08	2.29	0.70	0.62	—	13796	1738	8	0	22	0	0	logfile
✔	6QM9	4592	2021-09-03	2019-02-01	3.6	3.72	3.65	3.7	0.005	0.89	0.0	0.05	15.52	0.01	2.275	3.74	0.00	3.2	96.8	0.0	-6.09	0.74	0.84	2.64	3.7	0.003	0.66	0.0	0.04	16.83	0.00	2.171	8.86	0.35	3.7	96.3	0.0	0.50	0.59	0.75	0.84	1.70	10878	1346	4	0	4	0	0	logfile
✔	6AGF	9617	2021-09-03	2018-08-11	3.2	3.30	—	3.3	0.018	1.48	0.0	0.09	16.82	0.01	2.059	9.24	5.06	6.0	93.5	0.5	-4.93	0.62	0.84	3.52	3.3	0.011	1.20	1.0	0.04	16.79	0.00	1.872	7.94	0.09	5.1	94.6	0.3	-0.01	0.66	0.64	0.86	2.31	10980	1311	4	0	16	0	0	logfile
✔	6J8H	9781	2021-09-03	2019-01-19	3.2	3.35	—	3.3	0.010	1.53	1.0	0.10	21.69	0.01	1.886	57.68	27.17	2.0	96.6	1.3	2.87	0.60	0.78	1.53	3.3	0.003	0.69	0.0	0.04	18.46	0.00	2.185	7.65	0.62	3.9	95.8	0.3	0.96	0.82	0.64	0.85	1.81	11763	1433	6	0	12	0	0	logfile
✔	6E2G	8962	2021-09-04	2018-07-11	3.6	4.05	—	3.9	0.010	1.21	0.0	0.06	11.96	0.01	2.249	4.51	1.05	12.4	87.2	0.4	-5.78	0.69	0.83	2.39	3.9	0.003	0.79	0.0	0.04	15.65	0.00	2.165	9.47	0.26	9.3	90.7	0.0	-1.10	0.90	0.70	0.82	1.58	21108	2637	7	0	6	0	0	logfile

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