Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6iZR	9757	2022-04-08	2018-12-20	4.7	4.86	—	4.7	0.004	0.90	0.0	0.05	11.50	0.01	2.086	6.63	0.26	6.9	93.1	0.0	-4.07	0.68	0.78	—	4.7	0.003	0.82	0.0	0.05	13.46	0.00	1.755	22.90	0.00	7.0	93.0	0.0	-0.28	2.05	0.66	0.71	—	84360	10470	60	0	60	0	0	logfile
✔	6SB3	10134	2022-04-07	2019-07-18	3.5	3.63	3.51	3.7	0.002	0.56	0.0	0.04	12.95	0.00	2.104	13.24	0.00	4.9	95.1	0.0	-2.84	0.68	0.71	1.27	3.6	0.008	0.86	2.0	0.05	16.11	0.01	1.735	26.20	0.21	8.4	91.6	0.0	-2.16	1.23	0.71	0.77	1.09	75712	9664	32	0	32	0	0	logfile
✔	6EZM	4160	2022-04-08	2017-11-15	3.2	3.09	—	3.1	0.010	1.28	0.0	0.06	10.27	0.01	1.913	9.20	0.10	10.0	90.0	0.0	-4.97	0.79	0.82	4.74	3.1	0.004	0.69	0.0	0.05	15.82	0.01	2.051	10.65	0.23	8.3	91.7	0.0	-1.00	1.99	0.81	0.85	3.43	38400	5088	38	0	72	0	0	logfile
✘	6G2H	4343	2022-04-09	2018-03-23	4.6	4.69	—	4.5	0.013	1.94	46.0	0.11	13.54	0.01	1.921	14.03	2.29	8.3	91.0	0.7	-3.04	0.79	0.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	103896	6454	6	0	0	0	51852	logfile
✔	6iP2	9698	2022-04-07	2018-11-01	3.7	3.82	—	3.8	0.008	1.38	0.0	0.06	11.73	0.01	2.237	6.67	0.26	12.2	87.7	0.1	-5.47	0.70	0.77	1.63	3.8	0.003	0.82	0.0	0.05	16.30	0.01	2.159	15.23	0.56	10.6	89.3	0.1	-1.95	0.97	0.71	0.78	0.78	24660	3120	12	0	12	0	0	logfile
✔	3J9C	6224	2022-04-06	2014-12-25	2.9	3.02	—	3.1	0.005	1.11	0.0	0.05	14.41	0.00	2.277	7.02	6.13	4.8	95.2	0.0	-0.81	0.74	0.87	2.67	3.0	0.003	0.59	0.0	0.04	16.40	0.00	2.184	7.85	3.09	2.6	97.4	0.0	0.29	1.52	0.76	0.86	3.08	23296	2961	7	0	14	0	0	logfile
✔	6AV9	7007	2022-04-04	2017-09-01	3.9	3.83	—	3.8	0.008	1.12	0.0	0.06	12.69	0.01	1.920	37.26	0.33	12.8	86.8	0.4	-4.62	0.58	0.80	2.42	3.8	0.013	1.43	1.0	0.05	16.27	0.01	2.017	22.50	0.22	10.9	88.7	0.5	-2.19	1.26	0.59	0.79	1.19	8673	1101	6	0	3	0	0	logfile
✔	6U2K	20621	2022-04-04	2019-08-20	2.93	3.31	3.29	3.3	0.010	0.98	0.0	0.06	10.03	0.01	2.354	3.34	0.19	9.7	90.3	0.0	-4.70	0.70	0.83	4.65	3.3	0.004	0.72	0.0	0.04	15.07	0.01	2.262	7.00	2.12	8.7	91.3	0.0	-1.93	1.20	0.65	0.81	2.86	4719	604	1	0	4	0	0	logfile
✔	6AVB	7008	2022-04-04	2017-09-01	3.9	3.83	—	3.8	0.009	1.13	3.0	0.06	11.81	0.01	2.072	31.04	0.00	12.9	86.8	0.3	-5.00	0.58	0.79	2.72	3.8	0.013	1.48	0.0	0.05	15.45	0.01	1.693	24.30	0.00	11.3	88.7	0.0	-2.30	1.70	0.58	0.80	1.83	8673	1101	6	0	3	0	0	logfile
✔	6iP1	9697	2022-04-05	2018-11-01	3.9	4.05	—	4.0	0.006	1.03	0.0	0.05	11.71	0.00	1.321	7.91	0.34	7.5	92.5	0.0	-5.85	0.59	0.72	1.01	4.0	0.004	0.95	0.0	0.04	18.38	0.00	2.200	16.09	1.02	7.3	92.7	0.0	-0.36	1.25	0.60	0.75	-0.05	11245	1420	8	0	0	0	0	logfile
✔	6NSK	0499	2022-04-04	2019-01-24	2.7	2.82	2.55	3.1	0.008	1.11	0.0	0.06	14.47	0.01	2.213	4.78	0.00	3.6	96.4	0.0	-3.23	0.62	0.77	5.14	3.1	0.002	0.56	0.0	0.04	14.80	0.00	2.256	5.65	1.96	2.9	97.1	0.0	2.76	0.42	0.62	0.80	3.31	9096	1092	12	0	18	0	0	logfile
✔	5L4K	4002	2022-04-07	2016-05-25	3.9	4.00	—	4.2	0.007	0.85	3.0	0.05	16.12	0.01	1.808	5.02	3.82	11.8	85.0	3.2	-6.15	0.34	0.64	0.39	4.0	0.010	1.05	1.0	0.04	17.35	0.01	1.822	21.85	0.55	9.2	90.3	0.6	-2.49	1.25	0.37	0.69	0.23	79649	5000	12	0	0	0	39990	logfile
✔	5L4G	4002	2022-04-08	2016-05-25	3.9	4.09	—	4.0	0.007	0.96	2.0	0.05	15.50	0.01	1.788	6.11	3.00	9.6	88.5	1.9	-5.01	0.65	0.86	2.39	4.0	0.005	0.73	0.0	0.04	16.92	0.00	1.708	12.89	0.83	6.6	93.3	0.2	-0.63	2.91	0.63	0.81	1.85	135488	8637	40	0	11	0	67796	logfile
✔	6EZ8	3984	2022-04-06	2017-11-14	4.0	4.07	—	4.1	0.007	1.29	0.0	0.06	11.10	0.01	2.277	4.82	0.83	6.1	93.6	0.3	-5.17	0.61	0.77	—	4.1	0.005	0.86	0.0	0.04	16.19	0.01	2.141	9.82	0.75	5.8	94.2	0.0	-2.16	1.62	0.63	0.82	—	20491	2621	2	0	0	0	0	logfile
✔	6EoJ	3908	2022-04-05	2017-10-09	3.55	3.58	3.51	3.6	0.007	1.33	7.0	0.09	16.65	0.00	2.526	9.73	4.80	10.1	88.2	1.7	-3.75	0.59	0.78	2.60	3.6	0.005	0.84	0.0	0.05	17.60	0.01	2.089	22.86	0.52	7.3	92.6	0.1	-2.45	1.58	0.65	0.78	2.27	13688	1710	4	0	7	0	0	logfile
✔	5H1Q	9570	2022-04-06	2016-10-11	3.3	3.90	—	4.0	0.008	1.04	0.0	0.06	11.65	0.00	1.998	16.22	0.31	12.6	86.8	0.6	-5.07	0.44	0.69	3.01	3.9	0.004	0.80	0.0	0.04	16.47	0.00	2.137	8.99	0.93	9.3	90.1	0.6	-0.11	0.82	0.56	0.80	1.75	23784	2888	8	0	0	0	0	logfile
✔	6J0B	9760	2022-04-09	2018-12-23	2.9	3.24	—	3.2	0.008	0.96	0.0	0.06	15.44	0.01	2.311	4.63	4.01	3.8	96.0	0.2	-3.73	0.57	0.83	3.57	3.2	0.003	0.65	0.0	0.04	17.20	0.00	2.150	8.26	3.97	3.4	96.6	0.0	-0.54	0.75	0.55	0.84	2.75	46788	6000	24	0	0	0	0	logfile
✔	6KXS	0782	2022-04-06	2019-09-12	3.4	3.50	—	3.4	0.018	1.44	0.0	0.09	15.88	0.01	2.157	8.95	3.30	15.2	84.4	0.4	-4.73	0.70	0.72	2.54	3.4	0.004	0.74	0.0	0.05	16.71	0.01	2.118	10.82	0.47	8.9	91.1	0.0	-2.03	0.57	0.70	0.72	2.14	22499	2869	23	0	12	0	0	logfile
✔	6CUE	7621	2022-04-08	2018-03-26	4.0	4.33	—	4.1	0.007	0.95	0.0	0.07	9.98	0.01	2.121	6.19	0.21	7.4	92.6	0.0	-3.55	0.82	0.83	—	4.0	0.003	0.72	0.0	0.04	13.39	0.00	2.134	11.85	0.33	6.7	93.3	0.0	-1.32	0.82	0.82	0.83	—	31692	3849	27	0	114	0	0	logfile
✘	6JSi	9882	2022-04-05	2019-04-08	4.7	4.70	—	4.6	0.007	1.48	0.0	0.06	15.33	0.01	2.231	10.68	2.42	23.2	72.3	4.5	-6.05	0.64	0.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62820	5844	9	0	4044	0	0	logfile

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