Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7AA3	11689	2021-09-02	2020-09-03	3.56	3.97	3.53	3.9	0.004	0.66	0.0	0.04	14.11	0.00	2.046	9.30	0.00	10.1	89.9	0.0	-3.38	0.75	0.80	3.29	3.9	0.005	0.73	0.0	0.04	15.77	0.01	2.125	7.42	0.24	8.2	91.8	0.0	-1.81	0.37	0.74	0.79	1.77	8389	1094	2	0	0	0	0	logfile
✔	6Z1o	11031	2021-09-02	2020-05-14	3.2	3.40	2.66	3.4	0.013	2.23	0.0	0.13	13.75	0.01	2.354	4.26	0.00	8.2	91.8	0.0	-4.26	0.60	0.76	2.88	3.4	0.004	0.64	0.0	0.04	17.18	0.00	2.040	9.16	0.94	6.1	93.9	0.0	-3.43	2.03	0.62	0.80	2.38	7758	534	6	0	0	0	3786	logfile
✔	6X2L	22011	2021-09-02	2020-05-20	2.85	2.95	—	2.9	0.009	0.96	0.0	0.06	13.68	0.01	2.078	2.94	0.00	2.5	97.5	0.0	-6.46	0.64	0.88	2.92	2.9	0.003	0.66	0.0	0.04	15.73	0.00	2.265	5.27	1.16	2.0	98.0	0.0	2.05	1.77	0.62	0.88	2.09	9396	1233	3	0	0	0	0	logfile
✔	7DCQ	30639	2021-09-02	2020-10-26	2.9	3.09	—	3.1	0.006	0.96	1.0	0.06	10.61	0.01	2.378	4.64	0.85	4.1	95.9	0.0	-3.49	0.70	0.80	4.02	3.1	0.005	0.75	0.0	0.05	15.72	0.01	2.320	8.72	2.21	4.9	95.1	0.0	0.95	0.64	0.70	0.82	2.93	5197	653	1	0	0	0	0	logfile
✘	7D7R	30610	2021-09-02	2020-10-05	4.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-3.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7680	1160	2	0	0	0	0	logfile
✔	7DAG	30625	2021-09-06	2020-10-16	4.37	7.60	—	4.4	0.007	1.47	7.0	0.07	17.81	0.01	1.992	38.67	15.66	10.3	89.6	0.1	-2.99	0.80	0.69	—	4.4	0.003	0.74	0.0	0.04	12.82	0.00	2.079	20.19	0.02	6.2	93.8	0.0	-0.80	1.37	0.82	0.76	—	45976	6069	8	0	0	0	0	logfile
✔	7CCR	30340	2021-09-05	2020-06-17	4.9	6.57	—	4.8	0.007	0.96	0.0	0.06	24.75	0.01	1.593	6.93	0.11	4.4	95.6	0.0	-2.64	0.83	0.67	—	4.8	0.004	0.69	0.0	0.04	27.49	0.00	2.059	24.31	0.00	4.9	95.1	0.0	0.15	1.93	0.87	0.76	—	29722	2202	22	588	0	0	0	logfile
✔	7A8Z	11680	2021-09-02	2020-08-31	3.35	3.81	3.38	3.7	0.004	0.59	0.0	0.04	14.41	0.00	2.254	6.97	0.00	7.6	92.3	0.1	-1.49	0.68	0.75	3.00	3.8	0.003	0.55	0.0	0.04	15.67	0.00	2.286	6.24	0.24	6.7	93.2	0.1	-0.34	1.51	0.73	0.79	2.73	8402	1103	2	0	0	0	0	logfile
✔	7JGG	22326	2021-09-02	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	53.16	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.5	0.002	0.44	0.0	0.03	12.81	0.00	1.979	76.11	0.00	4.9	95.1	0.0	1.73	1.85	0.68	0.70	—	4210	506	1	0	0	0	28	logfile
✔	7B3Y	11997	2021-09-06	2020-12-01	3.7	4.33	—	4.0	0.014	1.44	60.0	0.11	14.41	0.01	2.031	10.22	4.35	2.0	98.0	0.0	-1.02	0.75	0.67	1.09	4.0	0.003	0.68	0.0	0.05	15.00	0.00	2.212	13.37	0.47	1.3	98.7	0.0	1.62	3.01	0.88	0.84	1.26	90960	12120	60	0	0	0	0	logfile
✔	6ZHX	11220	2021-09-04	2020-06-24	2.5	3.01	2.42	2.8	0.015	2.04	3.0	0.10	27.67	0.03	2.560	0.14	0.00	1.2	98.8	0.0	-0.83	0.80	0.81	5.74	2.7	0.006	0.62	0.0	0.04	28.61	0.00	2.157	1.81	0.48	1.2	98.8	0.0	2.73	1.06	0.87	0.89	4.62	21561	759	12	290	0	0	9607	logfile
✔	7KB5	22787	2021-09-03	2020-10-01	3.8	4.51	3.86	4.0	0.004	0.64	0.0	0.04	13.76	0.00	2.163	7.30	0.00	4.4	95.6	0.0	-1.47	0.65	0.84	1.16	4.0	0.008	0.82	0.0	0.04	15.15	0.00	2.067	13.35	0.10	4.6	95.4	0.0	1.64	1.06	0.66	0.86	1.42	9777	1252	6	0	0	0	0	logfile
✔	6RPo	4979	2021-09-07	2019-05-14	2.39	2.44	—	2.4	0.006	0.92	0.0	0.05	15.02	0.01	2.326	7.31	0.00	3.7	95.8	0.5	-2.67	0.72	0.86	4.83	2.4	0.004	0.68	0.0	0.05	17.00	0.01	2.109	4.36	1.34	4.5	95.0	0.5	-1.32	0.53	0.73	0.87	4.55	101400	12060	60	0	0	0	0	logfile
✔	6YRF	10888	2021-09-04	2020-04-20	3.9	4.58	—	4.2	0.006	0.78	0.0	0.05	14.50	0.00	2.028	27.02	0.21	12.8	87.1	0.1	-3.65	0.91	0.84	1.12	4.2	0.004	0.73	0.0	0.05	15.97	0.00	2.083	17.47	0.25	10.1	89.9	0.0	-0.85	0.63	0.91	0.83	0.85	24828	3108	4	0	0	0	0	logfile
✔	7KWG	23052	2021-09-07	2020-11-30	3.75	3.89	—	3.8	0.009	1.43	1.0	0.07	17.12	0.01	2.227	5.45	2.86	10.7	88.8	0.4	-5.79	0.80	0.82	2.01	3.8	0.004	0.67	0.0	0.03	16.30	0.01	1.787	16.41	0.16	8.6	91.4	0.0	-2.14	1.31	0.79	0.80	1.64	51870	2251	21	1584	0	0	0	logfile
✔	6ZHY	11221	2021-09-03	2020-06-24	3.0	3.57	2.97	3.1	0.015	2.05	3.0	0.10	28.04	0.03	2.586	0.12	0.65	1.7	98.3	0.0	-1.41	0.86	0.80	4.90	3.1	0.004	0.66	0.0	0.04	28.77	0.01	1.964	5.15	3.02	2.4	97.6	0.0	2.92	0.93	0.89	0.87	3.52	16127	557	9	220	0	0	7172	logfile
✔	7L7Q	23216	2021-09-02	2020-12-30	3.7	4.37	—	4.0	0.005	0.91	0.0	0.05	15.54	0.00	1.873	23.50	0.16	10.2	89.5	0.3	-4.40	0.84	0.81	0.86	4.0	0.004	0.97	0.0	0.05	17.52	0.00	2.153	21.47	0.47	8.2	91.8	0.0	-0.15	1.47	0.84	0.79	0.58	5619	687	3	0	0	0	0	logfile
✔	7LUM	23522	2021-09-03	2021-02-22	4.5	4.68	—	4.6	0.007	0.85	0.0	0.05	14.02	0.00	1.970	25.71	0.00	7.5	92.3	0.2	-0.70	0.79	0.75	—	4.6	0.003	0.78	0.0	0.05	13.95	0.01	2.071	18.43	0.03	5.1	94.8	0.1	0.04	3.39	0.79	0.76	—	63978	8374	16	0	0	0	0	logfile
✔	6LYU	30018	2021-09-03	2020-02-15	4.2	4.46	—	4.2	0.009	1.16	6.0	0.06	15.38	0.01	1.986	55.11	1.18	23.1	76.2	0.7	-6.16	0.86	0.81	—	4.2	0.004	0.80	0.0	0.04	13.87	0.01	2.104	24.55	0.00	11.8	88.1	0.1	-2.35	0.94	0.85	0.79	—	11118	1430	5	0	0	0	0	logfile
✔	6Z1i	11030	2021-09-02	2020-05-13	3.4	3.49	—	3.4	0.013	2.26	0.0	0.12	14.23	0.01	2.356	6.16	0.00	8.7	91.3	0.0	-4.29	0.58	0.73	3.59	3.4	0.004	0.69	0.0	0.05	17.59	0.00	2.124	10.22	0.26	11.0	89.0	0.0	-3.49	1.70	0.63	0.81	2.83	7140	486	6	0	0	0	3492	logfile

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