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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6VYL | 21463 | 2023-12-10 | 2020-02-27 | 3.4 | 3.43 | — | 3.4 | 0.008 | 0.85 | 0.0 | 0.05 | 14.42 | 0.01 | 2.293 | 4.68 | 0.48 | 5.1 | 94.9 | 0.0 | -4.60 | 0.72 | 0.84 | 2.99 | 3.4 | 0.002 | 0.52 | 0.0 | 0.04 | 15.80 | 0.00 | 2.156 | 8.64 | 0.21 | 3.4 | 96.6 | 0.0 | -0.15 | 0.53 | 0.67 | 0.83 | 2.63 | 13671 | 1792 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UDC | 26456 | 2023-12-09 | 2022-03-18 | 3.7 | 3.83 | 3.54 | 3.8 | 0.003 | 0.54 | 0.0 | 0.04 | 14.90 | 0.00 | 2.200 | 7.86 | 0.28 | 3.3 | 96.7 | 0.0 | 1.79 | 0.71 | 0.80 | 1.93 | 3.8 | 0.003 | 0.54 | 0.0 | 0.04 | 16.83 | 0.00 | 2.095 | 7.08 | 0.42 | 2.9 | 97.1 | 0.0 | 2.31 | 0.37 | 0.76 | 0.83 | 1.62 | 6425 | 806 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PDH | 13338 | 2023-12-07 | 2021-08-05 | 4.0 | 3.51 | — | 3.2 | 0.003 | 0.70 | 0.0 | 0.04 | 14.16 | 0.00 | 2.169 | 14.32 | 0.00 | 5.8 | 94.2 | 0.0 | -1.07 | 0.79 | 0.69 | — | 3.2 | 0.003 | 0.70 | 0.0 | 0.04 | 16.46 | 0.00 | 2.175 | 14.77 | 0.62 | 6.3 | 93.7 | 0.0 | -0.65 | 0.53 | 0.79 | 0.70 | — | 4516 | 577 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Pii | 13437 | 2023-12-09 | 2021-08-19 | 2.68 | 2.39 | — | 2.7 | 0.010 | 0.78 | 0.0 | 0.05 | 28.13 | 0.00 | 2.229 | 8.23 | 0.31 | 4.0 | 96.0 | 0.0 | -0.89 | 0.51 | 0.38 | 3.69 | 2.6 | 0.004 | 0.64 | 0.0 | 0.04 | 28.57 | 0.00 | 2.195 | 8.28 | 2.02 | 2.9 | 97.1 | 0.0 | 1.98 | 0.98 | 0.82 | 0.88 | 3.39 | 11192 | 779 | 12 | 245 | 0 | 0 | 0 | logfile |
✔ | 6WU4 | 21905 | 2023-12-10 | 2020-05-04 | 3.71 | 3.97 | 4.00 | 3.9 | 0.010 | 0.68 | 0.0 | 0.05 | 13.82 | 0.00 | 1.886 | 10.68 | 0.00 | 12.7 | 86.9 | 0.4 | -4.78 | 0.56 | 0.84 | 2.80 | 3.9 | 0.003 | 0.59 | 0.0 | 0.04 | 15.72 | 0.00 | 1.977 | 9.97 | 0.63 | 5.9 | 93.9 | 0.2 | 1.40 | 0.83 | 0.54 | 0.84 | 1.57 | 15332 | 978 | 2 | 0 | 0 | 0 | 7812 | logfile |
✔ | 7UDB | 26455 | 2023-12-09 | 2022-03-18 | 3.5 | 3.64 | 3.39 | 3.6 | 0.003 | 0.50 | 0.0 | 0.04 | 15.55 | 0.00 | 2.182 | 6.46 | 0.14 | 2.8 | 97.2 | 0.0 | 1.74 | 0.77 | 0.82 | 1.51 | 3.6 | 0.003 | 0.55 | 0.0 | 0.04 | 16.61 | 0.00 | 2.224 | 7.31 | 0.00 | 2.7 | 97.3 | 0.0 | 2.23 | 1.14 | 0.77 | 0.83 | 1.67 | 6472 | 807 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WUS | 32840 | 2023-12-07 | 2022-02-09 | 3.4 | 3.78 | — | 3.8 | 0.003 | 0.75 | 0.0 | 0.05 | 17.11 | 0.00 | 2.275 | 11.90 | 1.00 | 8.6 | 91.4 | 0.0 | -2.40 | 0.69 | 0.74 | 1.76 | 3.7 | 0.003 | 0.80 | 0.0 | 0.05 | 17.38 | 0.00 | 2.113 | 12.74 | 0.50 | 8.3 | 91.6 | 0.1 | -1.93 | 1.46 | 0.70 | 0.77 | 1.35 | 5450 | 682 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 8J7V | 36050 | 2023-12-09 | 2023-04-28 | 2.79 | 2.88 | 2.79 | 2.8 | 0.004 | 0.73 | 0.0 | 0.05 | 16.71 | 0.01 | 2.208 | 7.08 | 1.54 | 3.3 | 96.7 | 0.0 | 0.39 | 0.62 | 0.79 | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11083 | 1432 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SEF | 10154 | 2023-12-09 | 2019-07-29 | 3.7 | 4.25 | — | 3.6 | 0.007 | 0.85 | 0.0 | 0.05 | 27.69 | 0.00 | 2.225 | 4.94 | 0.00 | 2.7 | 97.3 | 0.0 | -2.10 | 0.88 | 0.84 | 2.28 | 3.5 | 0.006 | 0.77 | 0.0 | 0.04 | 28.62 | 0.00 | 2.057 | 17.86 | 1.29 | 3.4 | 96.6 | 0.0 | 0.66 | 0.73 | 0.89 | 0.85 | 1.88 | 11919 | 751 | 11 | 290 | 0 | 0 | 0 | logfile |
✔ | 7R87 | 24310 | 2023-12-09 | 2021-06-26 | 3.4 | 3.29 | 2.98 | 3.3 | 0.002 | 0.44 | 0.0 | 0.04 | 12.08 | 0.00 | 2.317 | 5.75 | 0.51 | 3.2 | 96.8 | 0.0 | -1.48 | 0.61 | 0.80 | 2.20 | 3.3 | 0.003 | 0.61 | 0.0 | 0.04 | 14.43 | 0.00 | 2.163 | 7.09 | 0.25 | 4.8 | 95.2 | 0.0 | 1.37 | 0.70 | 0.73 | 0.91 | 3.38 | 10793 | 1369 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RKV | 4912 | 2023-12-10 | 2019-04-30 | 4.6 | 4.86 | — | 4.5 | 0.002 | 0.53 | 0.0 | 0.04 | 13.18 | 0.00 | 2.207 | 7.23 | 0.00 | 5.3 | 94.7 | 0.0 | -1.73 | 0.87 | 0.80 | — | 4.5 | 0.003 | 0.80 | 0.0 | 0.05 | 15.47 | 0.01 | 1.100 | 12.32 | 0.00 | 7.5 | 92.5 | 0.0 | -1.30 | 0.91 | 0.87 | 0.79 | — | 15460 | 1784 | 8 | 64 | 0 | 0 | 0 | logfile |
✔ | 6VK1 | 21223 | 2023-12-08 | 2020-01-18 | 3.9 | 3.99 | — | 3.9 | 0.003 | 0.59 | 0.0 | 0.04 | 14.77 | 0.00 | 2.245 | 10.65 | 0.13 | 4.4 | 95.6 | 0.0 | -1.86 | 0.62 | 0.79 | 1.42 | 3.9 | 0.004 | 0.86 | 0.0 | 0.05 | 17.33 | 0.00 | 2.192 | 13.21 | 0.63 | 4.2 | 95.8 | 0.0 | 1.78 | 1.59 | 0.62 | 0.79 | 1.17 | 7259 | 882 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6J30 | 9773 | 2023-12-07 | 2019-01-03 | 4.5 | 4.74 | — | 4.6 | 0.002 | 0.44 | 0.0 | 0.04 | 7.35 | 0.00 | 2.093 | 8.60 | 0.07 | 6.4 | 93.4 | 0.3 | -3.38 | 0.86 | 0.72 | — | 4.5 | 0.004 | 0.76 | 0.0 | 0.04 | 12.18 | 0.00 | 1.918 | 21.54 | 0.01 | 5.4 | 94.4 | 0.2 | -0.88 | 1.91 | 0.89 | 0.77 | — | 106227 | 13504 | 47 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SEE | 10153 | 2023-12-09 | 2019-07-29 | 4.2 | 4.47 | — | 4.1 | 0.008 | 0.94 | 0.0 | 0.05 | 27.45 | 0.01 | 2.252 | 4.46 | 0.00 | 3.0 | 97.0 | 0.0 | -1.74 | 0.87 | 0.83 | — | 4.1 | 0.004 | 0.70 | 0.0 | 0.04 | 27.73 | 0.00 | 2.069 | 16.50 | 0.00 | 2.2 | 97.8 | 0.0 | 0.50 | 0.74 | 0.87 | 0.82 | — | 11949 | 756 | 11 | 290 | 0 | 0 | 0 | logfile |
✔ | 6J2Q | 9771 | 2023-12-07 | 2019-01-02 | 3.8 | 3.95 | — | 3.9 | 0.002 | 0.40 | 0.0 | 0.04 | 7.17 | 0.00 | 2.202 | 6.58 | 0.00 | 5.5 | 94.4 | 0.1 | -3.50 | 0.77 | 0.68 | 0.88 | 3.9 | 0.003 | 0.74 | 0.0 | 0.04 | 15.50 | 0.00 | 2.058 | 15.76 | 0.38 | 4.1 | 95.8 | 0.1 | -0.48 | 2.27 | 0.82 | 0.76 | 1.06 | 106311 | 13518 | 47 | 0 | 0 | 0 | 0 | logfile |
✔ | 7E87 | 31011 | 2023-12-10 | 2021-03-01 | 3.4 | 2.60 | 3.28 | 3.4 | 0.003 | 0.65 | 0.0 | 0.04 | 13.86 | 0.00 | 2.111 | 13.52 | 0.00 | 7.0 | 93.0 | 0.0 | -0.03 | 0.60 | 0.77 | 1.57 | 3.4 | 0.003 | 0.69 | 0.0 | 0.04 | 16.48 | 0.00 | 2.181 | 13.63 | 0.49 | 6.6 | 93.4 | 0.0 | 0.30 | 1.19 | 0.60 | 0.79 | 1.33 | 13304 | 1664 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ASA | 11891 | 2023-12-08 | 2020-10-27 | 3.5 | 3.33 | — | 3.2 | 0.013 | 1.98 | 6.0 | 0.10 | 19.68 | 0.02 | 2.490 | 0.68 | 0.18 | 3.5 | 95.8 | 0.7 | -2.30 | 0.75 | 0.75 | 1.26 | 3.2 | 0.005 | 0.80 | 0.0 | 0.04 | 20.96 | 0.01 | 2.051 | 16.87 | 0.55 | 5.7 | 94.1 | 0.1 | -0.33 | 1.45 | 0.76 | 0.77 | 0.46 | 8104 | 750 | 5 | 116 | 0 | 0 | 0 | logfile |
✘ | 7QDS | 13925 | 2023-12-10 | 2021-11-30 | 3.8 | 3.53 | 3.57 | 3.7 | 0.005 | 0.86 | 1.0 | 0.05 | 14.59 | 0.01 | 2.067 | 14.28 | 0.00 | 5.7 | 94.3 | 0.0 | -0.33 | 0.80 | 0.82 | 1.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13798 | 1771 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8C00 | 16347 | 2023-12-09 | 2022-12-15 | 2.9 | 3.49 | — | 2.8 | 0.007 | 0.82 | 0.0 | 0.06 | 19.30 | 0.01 | 2.091 | 3.29 | 0.84 | 3.4 | 96.3 | 0.3 | -0.72 | 0.88 | 0.89 | 3.72 | 2.8 | 0.008 | 0.72 | 0.0 | 0.04 | 19.33 | 0.01 | 2.121 | 6.12 | 1.45 | 3.5 | 96.4 | 0.1 | 0.41 | 1.09 | 0.88 | 0.90 | 2.90 | 63117 | 4186 | 26 | 1425 | 0 | 0 | 0 | logfile |
✔ | 6XJX | 22216 | 2023-12-09 | 2020-06-24 | 4.6 | 4.25 | — | 4.1 | 0.009 | 1.20 | 0.0 | 0.06 | 12.14 | 0.01 | 1.876 | 8.13 | 0.39 | 6.4 | 93.6 | 0.0 | -3.41 | 0.67 | 0.80 | — | 4.1 | 0.003 | 0.69 | 0.0 | 0.04 | 13.70 | 0.00 | 2.109 | 12.92 | 0.00 | 4.4 | 95.6 | 0.0 | 1.11 | 1.94 | 0.67 | 0.80 | — | 12077 | 1462 | 10 | 0 | 0 | 0 | 0 | logfile |