Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8F7X	28912	2023-08-11	2022-11-20	3.28	3.38	3.18	3.4	0.004	0.88	0.0	0.05	8.64	0.01	2.274	2.87	0.10	2.1	97.9	0.0	0.54	0.59	0.78	2.02	3.3	0.003	0.61	0.0	0.04	14.55	0.00	2.042	6.42	0.62	2.0	98.0	0.0	1.46	1.10	0.62	0.85	2.47	8902	1145	6	0	0	0	0	logfile
✔	7S8L	24896	2023-08-10	2021-09-18	2.45	2.08	2.46	1.7	0.003	0.56	0.0	0.04	12.22	0.00	2.238	2.45	0.00	3.5	96.5	0.0	1.27	0.81	0.80	4.28	1.6	0.003	0.61	0.0	0.04	15.52	0.00	2.231	3.14	1.70	3.2	96.8	0.0	1.39	0.34	0.84	0.84	3.79	8177	1096	6	0	0	0	0	logfile
✔	7KXY	23067	2023-08-11	2020-12-05	4.4	4.55	4.44	4.5	0.004	0.82	0.0	0.05	15.13	0.01	2.197	19.28	7.18	26.0	69.8	4.2	-5.90	0.63	0.60	—	4.5	0.003	0.82	0.0	0.05	14.45	0.01	2.088	21.63	0.10	15.0	84.9	0.1	-4.55	1.26	0.63	0.60	—	9510	1181	2	0	0	0	0	logfile
✔	7WY0	32883	2023-08-10	2022-02-15	2.83	2.21	—	2.0	0.007	0.87	0.0	0.06	11.98	0.00	1.690	7.73	0.00	6.2	93.8	0.0	-1.00	0.74	0.73	3.63	2.0	0.004	0.68	0.0	0.04	15.36	0.00	2.124	12.48	1.97	5.3	94.7	0.0	0.15	0.47	0.75	0.75	2.68	8723	1112	5	0	0	0	0	logfile
✔	6A6B	6988	2023-08-09	2018-06-27	3.07	3.41	2.07	3.4	0.006	1.07	0.0	0.07	7.61	0.00	2.263	7.15	0.00	11.3	88.7	0.0	-3.85	0.53	0.71	3.91	3.4	0.006	0.78	0.0	0.05	13.53	0.00	2.139	17.09	0.37	10.4	89.6	0.0	-2.88	2.17	0.52	0.71	2.87	5256	756	12	0	0	0	0	logfile
✔	6oKT	20104	2023-08-19	2019-04-15	4.2	4.31	—	4.2	0.007	0.96	0.0	0.06	15.35	0.01	2.188	7.94	1.60	11.9	88.1	0.0	-4.31	0.73	0.81	—	4.2	0.002	0.62	0.0	0.04	13.62	0.00	2.123	10.59	0.00	7.9	92.1	0.0	-2.29	0.58	0.73	0.80	—	27048	3451	7	0	0	0	0	logfile
✘	6PCV	20308	2023-08-11	2019-06-18	3.2	2.93	3.33	3.3	0.006	0.98	0.0	0.06	14.31	0.01	2.235	6.90	0.71	4.0	96.0	0.0	-3.37	0.71	0.72	2.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9035	1155	3	0	0	0	0	logfile
✔	7WY8	32887	2023-08-10	2022-02-15	2.83	2.24	—	2.0	0.007	0.81	0.0	0.05	12.03	0.01	2.220	1.00	0.00	4.1	95.9	0.0	-0.39	0.76	0.76	3.57	2.0	0.003	0.57	0.0	0.04	15.15	0.00	2.173	4.56	2.07	3.2	96.8	0.0	1.11	0.42	0.77	0.78	2.72	8049	1015	5	0	0	0	0	logfile
✔	6o2o	0610	2023-08-17	2019-02-24	4.53	4.47	—	4.3	0.006	1.00	1.0	0.06	14.75	0.01	2.191	7.84	0.42	11.2	88.8	0.0	-4.31	0.78	0.80	—	4.3	0.002	0.64	0.0	0.04	13.58	0.00	2.049	11.13	0.02	8.7	91.3	0.0	-2.58	0.59	0.77	0.79	—	72637	9218	14	0	0	0	0	logfile
✔	8DWS	27758	2023-08-15	2022-08-02	3.73	4.92	3.73	3.6	0.004	0.79	4.0	0.05	14.37	0.00	2.013	6.84	0.32	8.2	91.2	0.6	-1.47	0.69	0.45	0.78	3.6	0.007	0.92	0.0	0.05	15.86	0.00	2.010	32.17	0.21	9.9	89.5	0.6	-1.42	1.99	0.90	0.83	0.71	17229	2182	7	0	0	0	0	logfile
✔	7SQS	25392	2023-08-09	2021-11-06	3.1	3.86	2.91	3.6	0.002	0.47	0.0	0.04	13.61	0.00	2.317	3.59	0.22	2.9	97.1	0.0	1.01	0.76	0.84	2.45	3.6	0.004	0.57	0.0	0.04	14.95	0.00	2.243	4.28	0.00	4.6	95.4	0.0	0.93	0.32	0.77	0.86	2.75	4376	560	5	0	0	0	0	logfile
✔	7RYP	24744	2023-08-12	2021-08-25	4.8	5.38	4.84	6.5	0.015	1.50	0.0	0.07	10.94	0.01	2.098	4.80	0.00	6.2	92.1	1.7	-1.44	0.78	0.73	—	6.6	0.002	0.60	0.0	0.04	12.79	0.00	1.890	10.59	0.00	9.8	90.1	0.1	-0.44	1.01	0.77	0.71	—	11293	725	2	0	0	0	5599	logfile
✔	7T2E	25611	2023-08-09	2021-12-03	2.7	3.14	—	3.0	0.003	0.54	0.0	0.04	16.11	0.00	2.242	1.92	1.18	0.3	99.7	0.0	0.14	0.34	0.84	5.04	3.0	0.002	0.49	0.0	0.04	16.21	0.00	2.222	2.35	1.18	0.3	99.7	0.0	0.45	0.13	0.36	0.86	4.79	2390	312	2	0	0	0	0	logfile
✔	7FG2	31574	2023-08-11	2021-07-25	4.4	3.87	—	3.9	0.007	1.13	0.0	0.05	14.43	0.01	2.053	32.64	0.19	17.8	81.7	0.4	-3.95	0.38	0.65	—	3.9	0.004	0.76	0.0	0.05	14.45	0.00	2.118	18.43	0.00	13.3	86.4	0.3	-2.81	0.77	0.37	0.64	—	9342	1202	2	0	0	0	0	logfile
✔	6o0Y	0584	2023-08-12	2019-02-17	3.37	4.01	—	3.7	0.005	0.74	0.0	0.05	16.71	0.01	2.272	2.52	0.37	5.5	94.5	0.0	-4.11	0.85	0.88	2.93	3.7	0.004	0.58	0.0	0.04	16.88	0.00	2.074	5.83	0.50	4.6	95.4	0.0	-0.15	0.32	0.85	0.88	2.54	11828	1146	5	150	0	0	0	logfile
✔	7S9D	24933	2023-08-11	2021-09-20	4.6	4.40	—	4.1	0.006	0.89	0.0	0.05	11.27	0.00	2.095	23.20	0.35	10.7	89.0	0.3	-0.95	0.61	0.80	—	4.1	0.002	0.63	0.0	0.04	11.92	0.00	2.234	10.40	0.00	7.4	92.3	0.3	-0.77	0.46	0.59	0.77	—	10462	1354	2	0	0	0	0	logfile
✔	7SYE	25523	2023-08-16	2021-11-24	3.3	4.16	—	3.5	0.007	0.86	2.0	0.05	14.40	0.00	2.060	11.84	1.65	14.8	84.9	0.3	-4.43	0.85	0.77	2.18	3.5	0.003	0.68	0.0	0.04	14.87	0.00	2.121	11.74	0.35	10.4	89.5	0.1	-1.89	0.56	0.89	0.86	2.05	10216	1322	4	0	0	0	0	logfile
✔	7WXW	32882	2023-08-10	2022-02-15	2.84	2.24	—	2.1	0.005	0.78	0.0	0.05	12.89	0.01	2.256	1.29	0.00	4.4	95.6	0.0	-2.04	0.75	0.75	3.34	2.0	0.004	0.60	0.0	0.04	15.75	0.00	2.196	5.30	1.58	2.8	97.2	0.0	0.32	1.17	0.78	0.78	2.66	8121	1032	5	0	0	0	0	logfile
✔	6o2N	0609	2023-08-17	2019-02-24	3.7	3.87	—	3.8	0.006	0.93	0.0	0.06	15.00	0.01	2.266	4.97	0.55	9.7	90.3	0.0	-4.61	0.78	0.85	1.59	3.8	0.003	0.65	0.0	0.04	15.92	0.00	2.061	9.70	0.31	7.9	92.1	0.0	-2.54	0.46	0.78	0.85	1.23	72637	9218	14	0	0	0	0	logfile
✔	7SEP	25074	2023-08-10	2021-10-01	3.8	2.53	3.76	1.6	0.006	0.66	0.0	0.05	12.76	0.01	2.155	10.23	8.22	5.0	95.0	0.0	-0.19	0.72	0.72	2.36	2.0	0.004	0.75	0.0	0.05	17.02	0.01	2.160	15.37	0.72	3.5	96.5	0.0	-0.44	0.96	0.72	0.71	2.13	7641	930	2	0	0	0	0	logfile

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