Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7B6E	12053	2023-02-16	2020-12-07	4.5	2.79	—	5.1	0.005	1.03	0.0	0.05	15.04	0.01	2.129	36.05	0.00	10.9	89.1	0.0	-3.88	0.62	0.66	—	2.4	0.004	0.99	0.0	0.05	14.87	0.00	2.111	27.61	0.00	11.3	88.7	0.0	-1.65	0.83	0.61	0.67	—	2205	269	1	0	0	0	0	logfile
✔	6VWH	21416	2023-02-18	2020-02-19	4.26	4.65	—	4.3	0.006	1.06	0.0	0.06	13.74	0.01	2.223	10.17	0.82	6.7	92.5	0.8	-1.73	0.69	0.57	—	4.4	0.003	0.67	0.0	0.04	12.46	0.00	1.934	10.88	0.00	9.6	90.2	0.2	-1.61	1.52	0.71	0.60	—	8461	539	2	0	0	0	4139	logfile
✔	7SQV	25396	2023-02-17	2021-11-06	2.3	2.95	2.29	2.8	0.001	0.38	0.0	0.04	16.08	0.00	2.314	1.47	0.63	0.7	99.3	0.0	1.86	0.76	0.88	3.59	2.8	0.003	0.47	0.0	0.04	16.30	0.00	2.295	1.36	1.67	1.1	98.9	0.0	1.71	1.99	0.77	0.90	3.84	4471	573	5	0	0	7	0	logfile
✔	7SAE	24950	2023-02-26	2021-09-22	3.0	3.49	—	3.0	0.008	0.99	0.0	0.05	17.46	0.01	2.251	2.73	0.29	7.8	92.1	0.1	-4.37	0.81	0.78	3.61	3.0	0.004	0.63	0.0	0.04	17.16	0.01	2.073	7.22	2.13	6.6	93.4	0.0	-1.78	0.92	0.87	0.91	2.99	68571	2090	19	2434	0	0	0	logfile
✔	7V24	31636	2023-02-17	2021-08-07	3.29	3.50	—	3.4	0.006	0.80	0.0	0.05	13.64	0.00	2.164	11.90	0.24	11.3	88.7	0.0	-1.86	0.67	0.83	3.60	3.4	0.005	0.69	0.0	0.04	15.40	0.00	2.137	10.96	0.00	10.4	89.6	0.0	-1.14	0.40	0.66	0.84	3.54	3814	487	3	0	0	0	0	logfile
✘	7W92	32359	2023-02-25	2021-12-09	3.1	2.79	—	3.3	0.003	0.67	0.0	0.05	13.05	0.01	2.306	2.89	0.11	3.7	96.3	0.0	-4.34	0.80	0.76	2.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25071	3206	3	0	0	0	0	logfile
✔	7FDB	31539	2023-02-24	2021-07-16	4.8	5.04	4.73	8.8	0.003	0.57	0.0	0.04	13.84	0.00	1.761	12.61	0.00	7.3	92.6	0.0	-0.78	0.66	0.32	—	4.7	0.004	0.88	0.0	0.05	13.87	0.01	2.001	29.12	0.03	7.7	92.3	0.0	-1.80	2.25	0.77	0.68	—	64497	8295	31	0	0	0	0	logfile
✔	7T8C	25744	2023-02-26	2021-12-16	4.5	3.21	4.51	4.6	0.001	0.42	0.0	0.04	7.59	0.00	2.347	5.08	0.41	3.6	96.4	0.0	0.76	0.63	0.54	—	4.2	0.002	0.64	0.0	0.04	10.96	0.00	2.130	10.96	0.00	4.6	95.4	0.0	0.62	1.08	0.66	0.61	—	28952	3626	7	0	0	0	0	logfile
✔	7T3o	25666	2023-02-17	2021-12-08	3.3	3.72	—	3.7	0.006	0.68	0.0	0.05	13.49	0.00	2.284	3.91	0.29	7.1	92.9	0.0	-3.36	0.49	0.86	1.84	3.7	0.003	0.66	0.0	0.04	16.17	0.00	2.229	6.17	0.00	3.6	96.4	0.0	0.21	0.58	0.48	0.84	1.64	3410	452	1	0	0	0	0	logfile
✔	7VDA	31912	2023-02-24	2021-09-06	2.26	2.04	2.42	2.1	0.003	0.53	0.0	0.04	17.67	0.00	2.142	7.99	2.20	2.6	97.4	0.0	1.67	0.66	0.82	4.06	2.0	0.002	0.54	0.0	0.04	18.07	0.00	2.051	8.99	2.60	2.1	97.9	0.0	1.12	0.41	0.66	0.84	4.19	23292	2976	6	0	0	0	0	logfile
✔	7RA3	24334	2023-02-19	2021-06-29	3.24	3.47	—	3.3	0.005	0.91	0.0	0.05	13.68	0.00	2.074	6.99	0.35	7.1	92.9	0.0	-1.87	0.69	0.80	2.16	3.3	0.004	0.74	0.0	0.04	15.98	0.00	2.111	14.04	0.62	5.4	94.6	0.0	-0.79	0.82	0.69	0.83	1.29	10802	1381	7	0	0	0	0	logfile
✔	7B6D	12052	2023-02-19	2020-12-07	4.27	2.60	—	2.5	0.005	0.87	0.0	0.05	14.40	0.01	2.049	32.99	0.43	10.2	89.7	0.1	-2.46	0.78	0.74	—	2.5	0.003	0.72	0.0	0.05	14.41	0.00	2.080	23.40	0.00	9.1	90.9	0.0	-1.38	1.33	0.78	0.75	—	10470	1290	8	0	0	0	0	logfile
✔	8DD8	27336	2023-02-19	2022-06-17	3.4	3.50	3.43	3.4	0.003	0.60	0.0	0.04	15.62	0.00	2.211	7.30	0.00	4.0	95.9	0.1	-0.65	0.81	0.81	2.33	3.4	0.002	0.53	0.0	0.04	16.75	0.00	2.198	10.11	0.00	4.0	96.0	0.0	0.42	1.22	0.83	0.84	1.99	10492	1272	2	0	0	0	0	logfile
✔	7W94	32360	2023-02-25	2021-12-09	3.4	3.02	—	3.6	0.003	0.67	0.0	0.05	13.57	0.01	2.288	3.37	0.14	3.4	96.6	0.0	-4.24	0.78	0.74	1.49	3.5	0.005	0.76	0.0	0.05	16.33	0.00	2.055	14.40	0.57	6.9	93.1	0.0	-1.66	0.73	0.80	0.79	1.58	25082	3206	3	0	0	0	0	logfile
✔	7KFT	22855	2023-02-20	2020-10-14	3.4	3.68	—	3.6	0.005	0.83	0.0	0.05	14.40	0.01	2.237	5.46	0.00	4.8	95.2	0.0	-0.99	0.69	0.79	2.73	3.6	0.004	0.60	0.0	0.04	16.08	0.00	2.148	7.42	0.24	4.8	95.2	0.0	0.49	0.40	0.69	0.80	2.11	11680	1427	5	0	0	0	0	logfile
✔	8D0B	27104	2023-02-27	2022-05-26	3.43	4.09	3.52	2.2	0.002	0.48	0.0	0.04	15.42	0.00	2.167	5.41	0.06	3.1	96.9	0.0	1.19	0.87	0.83	1.67	2.2	0.006	0.58	0.0	0.04	15.99	0.00	2.165	6.56	0.09	4.9	95.1	0.0	1.08	0.20	0.88	0.84	1.81	29367	3630	8	15	0	0	0	logfile
✔	7XDi	33148	2023-02-21	2022-03-27	3.8	3.93	3.63	3.9	0.003	0.71	0.0	0.04	16.85	0.01	0.137	25.89	0.56	4.7	94.6	0.6	0.46	0.58	0.82	1.80	3.9	0.004	0.79	0.0	0.04	17.10	0.01	2.125	14.60	0.92	5.3	94.0	0.6	0.66	1.35	0.58	0.82	1.62	53669	6804	42	0	0	0	0	logfile
✔	6W4o	21535	2023-02-26	2020-03-11	4.8	5.05	4.72	4.7	0.004	0.77	1.0	0.05	10.85	0.00	0.834	15.75	0.91	3.0	96.7	0.2	-1.53	0.83	0.70	—	4.7	0.004	0.77	0.0	0.05	12.85	0.00	2.113	20.94	0.00	2.5	97.4	0.2	0.60	1.60	0.89	0.82	—	14475	1789	13	0	0	0	0	logfile
✔	7TRJ	26098	2023-02-25	2022-01-29	2.8	3.41	—	3.3	0.003	0.84	0.0	0.05	16.16	0.00	2.080	9.67	6.92	3.6	96.3	0.1	-1.80	0.78	0.82	2.52	3.3	0.004	0.64	0.0	0.04	16.60	0.00	2.120	7.40	3.64	4.1	95.9	0.0	1.01	0.70	0.79	0.85	2.99	25190	3234	10	0	0	0	0	logfile
✔	7YN9	33955	2023-02-20	2022-07-30	3.53	3.69	3.50	3.6	0.007	0.83	0.0	0.05	15.34	0.01	2.151	9.77	0.38	15.4	84.4	0.2	-5.33	0.81	0.86	2.74	3.6	0.003	0.65	0.0	0.04	16.42	0.00	2.134	8.68	0.23	10.9	88.9	0.2	-3.08	0.37	0.80	0.85	2.34	13068	1514	2	38	0	0	0	logfile

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