Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7V5G	31724	2022-04-09	2021-08-17	4.47	4.49	—	3.6	0.002	0.50	1.0	0.04	7.72	0.00	2.210	9.85	0.08	5.7	94.2	0.1	-2.80	0.86	0.71	—	3.8	0.004	0.73	0.0	0.04	12.29	0.00	2.034	21.47	0.02	4.3	95.7	0.0	-0.67	2.25	0.89	0.79	—	48150	6193	28	0	0	0	0	logfile
✔	7VH3	31985	2022-04-05	2021-09-20	3.6	3.70	—	3.7	0.005	1.09	0.0	0.06	11.49	0.01	2.257	7.95	0.90	8.5	91.0	0.4	-4.84	0.68	0.69	1.85	3.6	0.012	1.01	1.0	0.04	15.37	0.00	2.179	13.86	0.28	8.1	91.8	0.1	-1.27	1.65	0.70	0.73	1.34	12749	1612	1	0	0	0	0	logfile
✔	7PKo	13474	2022-04-06	2021-08-26	3.9	4.01	—	3.9	0.004	0.66	0.0	0.04	14.59	0.00	2.205	10.80	0.00	7.5	92.5	0.0	-4.16	0.76	0.82	2.59	3.9	0.003	0.65	0.0	0.04	16.17	0.00	2.200	11.51	0.66	5.3	94.7	0.0	-0.75	0.64	0.75	0.81	2.23	20368	2504	8	0	0	0	0	logfile
✔	7oSL	13054	2022-04-09	2021-06-09	3.1	2.94	3.08	3.1	0.010	1.26	0.0	0.07	12.14	0.01	2.374	0.44	0.00	1.3	98.7	0.0	-2.09	0.61	0.67	2.20	3.1	0.002	0.53	0.0	0.04	14.71	0.00	2.203	2.82	0.07	2.1	97.9	0.0	1.19	0.75	0.73	0.78	1.81	47885	2935	9	0	0	0	24225	logfile
✔	7PKP	13476	2022-04-06	2021-08-26	3.1	3.25	—	3.2	0.008	0.69	0.0	0.04	14.18	0.00	2.238	15.25	0.00	8.7	91.3	0.0	-4.06	0.76	0.83	2.79	3.2	0.004	0.54	0.0	0.04	16.10	0.00	2.301	7.67	0.09	6.8	93.2	0.0	-0.89	1.15	0.72	0.82	2.77	20360	2504	8	0	0	0	0	logfile
✔	6YT5	10912	2022-04-09	2020-04-23	3.0	2.67	—	3.3	0.010	0.73	0.0	0.05	15.51	0.00	2.196	13.76	0.15	8.0	92.0	0.0	-4.28	0.85	0.81	2.08	3.3	0.004	0.76	0.0	0.04	17.73	0.01	2.144	11.76	1.90	3.6	96.4	0.0	0.71	0.54	0.83	0.81	1.27	39078	5040	12	0	0	0	0	logfile
✔	7K8B	22725	2022-04-04	2020-09-26	2.94	2.86	—	3.1	0.005	0.83	2.0	0.05	14.13	0.01	2.214	14.30	0.68	5.5	94.5	0.0	-0.97	0.41	0.61	1.17	3.1	0.003	0.79	0.0	0.04	16.91	0.01	2.147	15.10	2.36	5.4	94.6	0.0	-0.14	1.19	0.42	0.63	0.64	5543	726	1	0	0	0	0	logfile
✔	7FG3	31577	2022-04-04	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.23	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.009	0.98	0.0	0.05	16.79	0.01	2.094	23.98	0.30	15.7	83.7	0.6	-3.71	0.78	0.23	0.45	0.29	9054	1166	2	0	0	0	0	logfile
✔	7K8C	22726	2022-04-05	2020-09-26	4.27	4.22	—	4.2	0.004	0.84	2.0	0.05	13.70	0.01	2.196	12.83	0.85	3.2	96.8	0.0	0.14	0.47	0.56	—	4.2	0.003	0.80	0.0	0.04	13.55	0.01	2.215	13.63	0.17	3.6	96.4	0.0	0.67	0.60	0.50	0.61	—	5524	723	1	0	0	0	0	logfile
✔	7K8A	22724	2022-04-05	2020-09-26	3.65	3.57	—	3.7	0.004	0.92	1.0	0.05	13.38	0.01	2.226	16.00	0.17	6.4	93.6	0.0	-1.30	0.40	0.55	0.67	3.7	0.004	0.85	0.0	0.04	15.78	0.01	2.217	13.68	0.51	4.3	95.7	0.0	-0.51	0.48	0.41	0.54	0.25	5513	723	1	0	0	0	0	logfile
✔	7oTQ	13065	2022-04-07	2021-06-10	4.8	5.78	4.82	5.0	0.004	0.76	0.0	0.05	24.91	0.01	2.055	6.93	1.26	4.1	95.5	0.4	-1.44	0.84	0.78	—	5.0	0.004	0.66	0.0	0.04	24.93	0.00	1.986	14.28	0.00	3.3	96.5	0.2	0.47	1.50	0.85	0.78	—	29140	1214	11	298	0	0	13365	logfile
✔	7JZY	22584	2022-04-07	2020-09-02	3.6	3.61	—	3.6	0.009	0.96	0.0	0.05	16.34	0.01	2.236	5.56	0.85	7.0	93.0	0.0	-3.78	0.81	0.85	2.54	3.5	0.006	0.89	1.0	0.04	17.32	0.00	1.653	12.31	0.09	5.9	94.1	0.0	-0.96	0.49	0.81	0.84	2.12	24539	3024	12	61	0	0	0	logfile
✔	7EY5	31378	2022-04-04	2021-05-29	3.4	3.68	—	3.5	0.005	0.81	0.0	0.05	13.84	0.01	2.161	11.66	0.00	12.9	87.1	0.0	-3.63	0.68	0.82	2.63	3.5	0.004	0.79	0.0	0.05	15.39	0.01	2.085	11.46	0.36	10.0	90.0	0.0	-2.46	0.42	0.68	0.84	1.98	5072	648	5	0	0	0	0	logfile
✘	7FiJ	31599	2022-04-04	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3061	561	1	0	0	0	0	logfile
✔	7EY0	31374	2022-04-04	2021-05-29	3.2	3.42	—	3.4	0.007	1.01	5.0	0.06	14.51	0.01	2.105	17.83	3.08	12.2	87.3	0.4	-2.42	0.55	0.73	3.30	3.4	0.004	0.76	0.0	0.04	15.78	0.01	2.126	14.49	0.46	6.8	93.2	0.0	-1.42	1.71	0.58	0.78	2.82	5963	755	6	0	0	0	0	logfile
✔	7MC0	23752	2022-04-04	2021-04-01	3.3	3.73	—	3.7	0.012	1.62	8.0	0.10	12.73	0.01	1.925	7.84	1.19	3.9	95.8	0.3	-0.86	0.65	0.81	2.48	3.7	0.003	0.62	0.0	0.04	14.66	0.00	2.209	5.84	0.13	3.9	96.1	0.0	0.90	1.05	0.65	0.82	2.10	7092	931	4	0	0	0	0	logfile
✔	7EZV	31391	2022-04-04	2021-06-02	3.3	3.71	—	3.5	0.005	0.71	0.0	0.05	13.54	0.01	2.034	14.66	0.75	8.4	91.3	0.3	-0.96	0.74	0.85	3.03	3.5	0.004	0.70	0.0	0.04	15.47	0.01	2.071	14.04	0.37	6.8	93.1	0.2	-0.77	0.46	0.74	0.86	3.09	4937	632	5	0	0	0	0	logfile
✔	7K8D	22728	2022-04-05	2020-09-26	4.33	4.48	—	4.7	0.004	1.12	0.0	0.06	12.53	0.01	2.205	23.61	1.86	4.3	95.7	0.0	-2.98	0.33	0.40	—	4.7	0.003	0.83	0.0	0.04	13.33	0.01	2.120	13.72	0.00	4.3	95.7	0.0	0.70	1.45	0.41	0.49	—	5529	725	1	0	0	0	0	logfile
✔	7M1X	23626	2022-04-05	2021-03-15	3.7	4.26	—	4.1	0.007	0.78	0.0	0.04	29.10	0.01	2.244	6.51	2.27	5.5	94.4	0.1	-1.56	0.83	0.84	1.52	4.1	0.006	0.72	0.0	0.04	29.27	0.00	2.056	17.81	0.65	5.6	94.4	0.0	0.88	1.26	0.84	0.85	1.58	11475	746	10	272	0	0	0	logfile
✔	7V5M	31727	2022-04-09	2021-08-17	3.88	4.12	—	3.8	0.002	0.61	0.0	0.04	7.67	0.00	2.155	9.48	0.00	3.0	96.9	0.1	-2.87	0.80	0.69	1.03	3.8	0.005	0.84	0.0	0.05	14.29	0.00	2.001	17.49	0.52	3.3	96.7	0.0	-0.10	1.82	0.90	0.85	2.17	45340	6198	28	0	0	0	0	logfile

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