Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YGC	33815	2023-07-04	2022-07-11	2.65	3.28	2.77	2.9	0.007	0.50	0.0	0.03	14.76	0.00	1.778	12.79	0.00	0.0	0.0	0.0	—	0.90	0.83	—	2.9	0.004	0.56	0.0	0.03	15.40	0.00	1.934	13.86	0.00	0.0	0.0	0.0	—	1.48	0.92	0.90	—	8690	0	3	407	6	0	0	logfile
✔	6o1o	0454	2023-07-07	2019-02-21	3.8	4.00	—	3.6	0.008	1.55	0.0	0.07	15.00	0.01	2.295	4.58	0.00	0.0	0.0	0.0	—	0.72	0.70	—	3.6	0.013	1.77	0.0	0.07	13.79	0.00	1.993	31.58	0.00	0.0	0.0	0.0	—	1.70	0.78	0.76	—	15193	0	14	66	2757	0	0	logfile
✔	7URi	26713	2023-07-03	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	25.77	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.008	1.44	0.0	0.07	23.84	0.01	2.072	23.68	0.00	0.0	0.0	0.0	—	2.06	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	7URM	26714	2023-07-03	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	23.67	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.16	0.0	0.05	22.87	0.01	1.983	29.94	0.00	0.0	0.0	0.0	—	1.70	0.15	0.54	—	1905	0	1	90	0	0	0	logfile
✔	7ZFW	14704	2023-07-06	2022-04-01	3.8	4.62	3.46	3.0	0.006	0.83	0.0	0.05	17.92	0.03	2.266	2.77	0.00	0.0	0.0	0.0	—	0.32	0.81	—	3.0	0.009	0.90	0.0	0.04	20.26	0.01	1.952	38.01	0.00	0.0	0.0	0.0	—	2.55	0.33	0.85	—	13188	0	1	615	0	0	0	logfile
✔	7YGD	33816	2023-07-04	2022-07-11	3.41	4.13	3.42	3.3	0.002	0.49	0.0	0.03	15.33	0.00	2.100	14.25	0.00	0.0	0.0	0.0	—	0.90	0.81	—	3.3	0.007	0.75	0.0	0.04	17.38	0.01	1.823	32.82	0.00	0.0	0.0	0.0	—	1.50	0.91	0.89	—	8313	0	3	389	6	0	0	logfile
✔	7EZ2	31386	2023-07-04	2021-06-01	3.05	2.80	—	3.0	0.005	0.56	0.0	0.03	13.92	0.00	1.809	0.92	0.00	0.0	0.0	0.0	—	0.69	0.81	—	3.0	0.008	0.86	0.0	0.05	15.75	0.01	1.755	7.20	0.00	0.0	0.0	0.0	—	1.04	0.73	0.89	—	8698	0	3	406	31	0	0	logfile
✔	7YGB	33814	2023-07-04	2022-07-11	2.62	3.15	2.70	2.9	0.007	0.52	0.0	0.03	14.46	0.00	2.079	13.50	0.00	0.0	0.0	0.0	—	0.88	0.84	—	2.9	0.007	0.63	0.0	0.04	14.92	0.00	1.835	13.73	0.00	0.0	0.0	0.0	—	0.87	0.90	0.91	—	8738	0	5	407	54	0	0	logfile
✔	7YG8	33811	2023-07-04	2022-07-11	2.97	3.59	3.04	3.0	0.002	0.48	0.0	0.03	14.91	0.00	2.042	13.48	0.00	0.0	0.0	0.0	—	0.89	0.82	—	3.0	0.006	0.63	0.0	0.04	15.97	0.00	1.823	18.76	0.00	0.0	0.0	0.0	—	0.37	0.91	0.89	—	8440	0	3	395	5	0	0	logfile
✔	8HD7	34671	2023-07-05	2022-11-03	3.52	3.99	3.58	3.3	0.003	0.60	0.0	0.03	14.67	0.00	1.927	2.96	0.00	0.0	0.0	0.0	—	0.89	0.77	—	3.3	0.007	0.80	0.0	0.05	16.62	0.01	1.771	17.29	0.00	0.0	0.0	0.0	—	2.12	0.91	0.84	—	8983	0	1	419	28	0	0	logfile
✔	7YGA	33813	2023-07-04	2022-07-11	2.35	3.08	2.44	2.8	0.008	0.62	0.0	0.04	15.23	0.01	1.779	10.87	0.00	0.0	0.0	0.0	—	0.89	0.87	—	2.8	0.007	0.60	0.0	0.04	15.25	0.00	1.826	12.63	0.00	0.0	0.0	0.0	—	0.16	0.89	0.88	—	8692	0	3	407	8	0	0	logfile
✔	7XD6	33137	2023-07-05	2022-03-26	2.84	3.25	2.83	3.0	0.005	0.74	0.0	0.04	15.28	0.00	1.975	1.30	0.00	0.0	0.0	0.0	—	0.88	0.86	—	3.0	0.005	0.66	0.0	0.04	16.14	0.00	1.883	7.41	0.00	0.0	0.0	0.0	—	1.32	0.88	0.89	—	9843	0	3	459	29	0	0	logfile
✔	7XD7	33138	2023-07-04	2022-03-26	3.02	3.40	—	3.1	0.003	0.61	0.0	0.04	14.03	0.00	1.736	0.77	0.00	0.0	0.0	0.0	—	0.90	0.86	—	3.1	0.007	0.66	0.0	0.04	15.12	0.00	1.878	8.19	0.00	0.0	0.0	0.0	—	2.01	0.92	0.92	—	8693	0	1	405	30	0	0	logfile
✔	7XD3	33134	2023-07-05	2022-03-26	4.05	4.16	—	3.8	0.003	0.62	0.0	0.04	16.04	0.00	1.960	1.21	0.00	0.0	0.0	0.0	—	0.85	0.74	—	3.9	0.007	0.80	0.0	0.04	17.14	0.01	1.675	17.13	0.00	0.0	0.0	0.0	—	1.77	0.87	0.81	—	9062	0	1	423	28	0	0	logfile
✔	7XD4	33135	2023-07-05	2022-03-26	3.89	4.13	—	3.8	0.003	0.59	0.0	0.03	15.73	0.00	1.880	1.73	0.00	0.0	0.0	0.0	—	0.85	0.73	—	3.8	0.007	0.78	0.0	0.04	17.27	0.01	1.748	17.91	0.00	0.0	0.0	0.0	—	1.76	0.87	0.78	—	9062	0	1	423	28	0	0	logfile
✔	7UVT	26816	2023-07-06	2022-05-02	3.9	4.17	4.00	4.1	0.001	0.41	0.0	0.02	16.13	0.00	1.897	6.61	0.00	0.0	0.0	0.0	—	0.76	0.74	—	4.1	0.006	0.70	0.0	0.04	17.94	0.01	1.892	21.35	0.00	0.0	0.0	0.0	—	0.48	0.77	0.76	—	12409	0	1	386	0	0	4149	logfile
✔	7PTL	13630	2023-07-11	2021-09-27	4.9	10.06	4.95	—	0.005	1.01	0.0	0.06	16.11	0.01	2.401	0.61	0.00	0.0	0.0	0.0	—	0.88	0.79	—	—	0.007	0.90	0.0	0.04	21.29	0.01	1.737	86.57	0.00	0.0	0.0	0.0	—	3.52	0.91	0.92	—	23080	0	1	720	0	0	7743	logfile
✔	7XD5	33136	2023-07-04	2022-03-26	2.84	3.32	2.81	3.1	0.003	0.58	0.0	0.03	13.91	0.00	1.864	0.61	0.00	0.0	0.0	0.0	—	0.88	0.86	—	3.1	0.004	0.64	0.0	0.04	15.36	0.00	1.949	6.26	0.00	0.0	0.0	0.0	—	1.38	0.89	0.90	—	8714	0	3	406	30	0	0	logfile
✔	7SAM	24952	2023-07-03	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	13.28	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.007	0.88	0.0	0.04	22.84	0.01	1.820	82.61	0.00	0.0	0.0	0.0	—	5.78	0.96	0.87	—	5399	0	1	169	0	0	1802	logfile
✔	7UR5	26705	2023-07-03	2022-04-21	2.6	2.89	2.82	2.9	0.008	1.48	0.0	0.11	25.09	0.01	2.204	2.44	0.00	0.0	0.0	0.0	—	0.05	0.58	—	2.9	0.005	0.83	0.0	0.04	20.54	0.01	2.027	14.87	0.00	0.0	0.0	0.0	—	1.86	0.08	0.65	—	5709	0	3	270	0	0	0	logfile

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