Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7DD9	30650	2022-04-08	2020-10-28	2.4	2.49	2.37	2.4	0.007	0.71	0.0	0.05	15.88	0.00	1.932	8.69	1.93	7.1	92.9	0.0	-1.19	0.79	0.87	4.70	2.4	0.004	0.64	0.0	0.05	16.22	0.00	1.945	9.39	2.10	6.2	93.8	0.0	-0.98	0.22	0.80	0.88	4.84	37149	4516	12	0	12	949	0	logfile
✔	7F1S	31424	2022-04-04	2021-06-09	2.8	3.44	—	3.2	0.002	0.55	0.0	0.04	10.91	0.00	2.228	9.32	0.00	3.5	96.5	0.0	-1.65	0.69	0.76	1.35	3.2	0.004	0.70	0.0	0.04	15.07	0.00	2.157	13.22	3.52	4.1	95.9	0.0	0.02	1.18	0.70	0.81	2.23	6209	847	4	0	0	0	0	logfile
✔	7oP5	13013	2022-04-04	2021-05-29	3.7	4.09	—	4.0	0.004	0.72	0.0	0.05	13.58	0.00	1.940	8.21	0.00	6.2	93.8	0.0	-1.69	0.68	0.78	1.67	4.0	0.003	0.60	0.0	0.04	15.71	0.01	1.900	7.57	0.21	4.6	95.4	0.0	-0.44	0.42	0.67	0.77	1.07	8554	1076	1	0	2	0	0	logfile
✔	7MEZ	23808	2022-04-05	2021-04-08	2.89	3.32	—	3.2	0.003	0.56	0.0	0.04	13.14	0.00	2.187	8.92	0.07	3.3	96.5	0.2	0.61	0.78	0.82	3.00	3.2	0.003	0.55	0.0	0.04	15.47	0.00	2.187	9.04	1.25	4.1	95.8	0.1	0.92	0.33	0.78	0.83	2.55	12361	1536	2	0	0	0	0	logfile
✔	7o24	12698	2022-04-04	2021-03-30	4.8	4.54	4.80	4.4	0.003	0.62	0.0	0.04	17.15	0.00	2.084	14.12	1.38	3.2	96.6	0.2	0.00	0.76	0.80	—	4.4	0.003	0.61	0.0	0.04	16.73	0.00	2.063	14.00	0.11	4.9	95.0	0.2	-0.43	0.99	0.76	0.81	—	9318	1090	5	46	0	0	0	logfile
✔	6XKY	22229	2022-04-08	2020-06-27	3.2	3.13	3.17	3.2	0.006	0.55	0.0	0.03	10.04	0.00	1.588	4.66	0.48	1.5	98.5	0.0	2.67	0.52	0.87	2.05	3.2	0.004	0.49	0.0	0.03	14.28	0.00	2.145	4.55	0.33	1.9	98.1	0.0	3.67	0.50	0.53	0.89	1.91	38760	5420	20	0	0	0	0	logfile
✘	7S9Z	24942	2022-04-04	2021-09-21	4.14	4.38	—	4.3	0.006	0.81	1.0	0.04	13.12	0.00	1.246	10.18	0.00	10.6	89.4	0.0	-2.53	0.66	0.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7274	890	1	0	2	0	0	logfile
✘	7R88	24311	2022-04-05	2021-06-26	3.5	3.76	—	3.7	0.002	0.45	0.0	0.04	12.49	0.00	2.274	5.25	1.02	3.5	96.5	0.0	-1.50	0.69	0.85	2.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10787	1368	4	0	0	0	0	logfile
✔	7M6J	23698	2022-04-05	2021-03-25	3.6	3.79	3.48	3.7	0.004	0.76	1.0	0.05	16.05	0.00	1.991	12.72	0.79	9.1	90.9	0.0	-2.02	0.78	0.76	2.55	3.7	0.003	0.69	0.0	0.05	17.02	0.00	2.004	10.68	0.79	7.5	92.5	0.0	-1.49	0.38	0.79	0.76	1.93	12901	1614	12	4	3	0	0	logfile
✔	7R7N	24299	2022-04-04	2021-06-25	3.95	4.08	3.93	4.1	0.010	1.24	0.0	0.07	9.44	0.00	2.553	0.58	0.45	3.2	96.8	0.0	0.00	0.81	0.77	3.23	4.0	0.007	0.89	0.0	0.05	14.57	0.01	2.237	10.85	0.90	7.0	93.0	0.0	-1.21	1.31	0.84	0.81	2.20	2790	391	4	0	3	0	0	logfile
✔	7LQi	23487	2022-04-04	2021-02-13	3.5	3.92	—	3.9	0.016	1.40	0.0	0.03	20.42	0.00	2.242	22.86	5.00	0.0	100.0	0.0	-3.42	0.62	0.78	4.80	3.9	0.051	2.84	5.0	0.14	22.95	0.01	1.918	120.83	3.83	46.2	53.8	0.0	-7.03	1.54	0.65	0.83	2.47	8400	800	100	0	0	0	0	logfile
✔	7NYW	12656	2022-04-09	2021-03-23	3.1	3.76	3.13	3.2	0.003	0.50	0.0	0.04	18.04	0.00	1.891	6.07	0.00	3.7	96.3	0.0	1.43	0.83	0.79	1.86	3.2	0.003	0.49	0.0	0.04	18.54	0.00	1.855	6.50	0.08	3.6	96.4	0.0	2.00	0.47	0.84	0.83	1.82	48568	2795	18	104	6	0	23780	logfile
✔	7NQK	12528	2022-04-04	2021-03-01	3.5	3.75	3.51	3.6	0.005	0.84	0.0	0.05	14.92	0.00	2.035	16.48	0.90	8.6	91.4	0.0	-1.81	0.58	0.82	2.00	3.6	0.015	1.37	1.0	0.04	16.88	0.00	2.127	12.75	0.60	9.1	90.9	0.0	-0.77	0.42	0.58	0.82	1.73	6139	781	2	0	0	0	0	logfile
✔	7ENN	31217	2022-04-05	2021-04-18	2.8	3.21	—	3.1	0.006	0.68	0.0	0.04	25.33	0.00	2.127	7.99	0.00	4.5	95.4	0.1	-0.16	0.84	0.87	4.06	3.1	0.005	0.61	0.0	0.04	26.14	0.00	2.079	6.07	0.73	4.5	95.5	0.0	1.03	0.30	0.84	0.89	3.43	16319	1300	12	292	2	0	0	logfile
✔	6XLG	22243	2022-04-05	2020-06-28	2.71	2.81	—	2.8	0.001	0.36	0.0	0.04	10.12	0.00	2.105	5.84	0.00	1.3	98.7	0.0	-3.01	0.73	0.81	4.05	2.8	0.003	0.56	0.0	0.04	16.65	0.00	2.000	8.70	1.78	2.2	97.8	0.0	-0.16	3.07	0.77	0.88	4.10	12258	1504	6	0	6	0	0	logfile
✔	7o7F	12746	2022-04-05	2021-04-13	3.15	3.42	3.19	3.4	0.004	0.64	0.0	0.04	14.02	0.00	1.932	7.93	0.16	2.5	97.5	0.0	0.48	0.70	0.77	2.29	3.4	0.004	0.66	0.0	0.04	15.82	0.01	2.096	9.46	0.24	2.0	98.0	0.0	0.49	0.52	0.69	0.75	1.99	11170	1420	7	0	0	0	0	logfile
✔	7LD5	23282	2022-04-05	2021-01-12	3.07	3.46	—	3.4	0.006	0.67	0.0	0.05	16.01	0.00	2.102	8.95	6.51	4.3	95.7	0.0	-2.06	0.77	0.82	2.94	3.4	0.003	0.55	0.0	0.04	15.94	0.00	2.160	7.17	0.29	2.4	97.6	0.0	1.02	0.35	0.74	0.82	2.96	13542	1761	9	15	6	0	0	logfile
✔	6XLB	22238	2022-04-05	2020-06-28	3.8	4.01	—	3.8	0.002	0.43	0.0	0.04	13.65	0.00	2.235	7.33	0.00	2.0	98.0	0.0	-2.43	0.82	0.77	1.14	3.8	0.004	0.73	0.0	0.05	16.18	0.00	2.094	18.24	0.48	3.1	96.9	0.0	-0.51	0.90	0.84	0.81	1.55	11180	1380	4	0	0	0	0	logfile
✔	7DUQ	30866	2022-04-04	2021-01-11	2.5	2.82	—	2.8	0.006	0.85	0.0	0.06	13.35	0.00	2.126	10.61	0.30	2.3	97.7	0.0	-0.86	0.66	0.78	3.15	2.8	0.004	0.62	0.0	0.04	16.35	0.01	2.156	11.66	1.58	2.9	97.1	0.0	0.69	1.57	0.58	0.77	2.43	9602	1174	7	0	8	0	0	logfile
✔	7MXL	24073	2022-04-05	2021-05-19	3.2	3.53	—	3.4	0.004	0.61	0.0	0.04	13.08	0.00	2.106	11.29	0.08	5.7	94.3	0.0	-1.92	0.78	0.85	3.40	3.4	0.003	0.60	0.0	0.04	14.83	0.00	2.121	11.52	0.25	5.8	94.1	0.1	-1.18	0.32	0.78	0.85	3.12	10866	1422	7	0	0	0	0	logfile

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