Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6o84	0650	2023-08-09	2019-03-08	3.92	4.04	—	4.0	0.005	0.84	0.0	0.05	14.01	0.00	2.350	2.97	0.64	4.9	95.1	0.0	-5.68	0.60	0.82	2.21	4.0	0.004	0.78	0.0	0.04	16.35	0.00	2.131	8.82	0.16	7.3	92.7	0.0	1.35	1.28	0.61	0.82	2.66	6224	712	2	0	118	0	0	logfile
✔	7E8B	31013	2023-08-23	2021-03-01	4.2	3.74	4.28	3.8	0.003	0.61	0.0	0.04	14.23	0.00	2.120	15.19	0.05	7.3	92.7	0.0	-1.09	0.67	0.65	—	3.6	0.005	0.74	0.0	0.05	14.51	0.01	2.108	21.99	0.05	9.2	90.8	0.0	-1.45	0.58	0.68	0.68	—	36832	4580	8	0	0	0	0	logfile
✔	7S7B	24882	2023-08-17	2021-09-15	4.06	3.82	—	3.6	0.004	0.46	0.0	0.04	10.74	0.00	1.963	8.58	1.54	7.9	92.1	0.0	0.42	0.81	0.80	—	3.6	0.004	0.63	0.0	0.04	12.64	0.00	2.184	10.11	0.04	6.2	93.8	0.0	0.46	0.62	0.82	0.81	—	22217	2709	10	22	2	0	0	logfile
✔	7Ki1	22883	2023-08-11	2020-10-22	2.5	2.57	2.46	2.6	0.008	0.93	0.0	0.06	15.54	0.00	2.257	8.41	0.28	3.5	96.5	0.0	-1.64	0.64	0.81	3.96	2.6	0.004	0.57	0.0	0.04	16.94	0.00	2.134	5.57	1.66	2.1	97.9	0.0	0.97	0.51	0.65	0.85	3.63	10265	1285	11	0	1	73	0	logfile
✔	6QX3	4661	2023-08-16	2019-03-07	3.79	3.94	—	3.9	0.007	0.77	0.0	0.04	14.67	0.00	2.050	4.45	0.00	9.7	90.3	0.0	-5.16	0.74	0.79	2.40	3.8	0.004	0.62	0.0	0.04	16.40	0.00	1.988	9.64	0.17	10.1	89.9	0.0	-2.38	0.72	0.76	0.80	2.53	21587	1337	6	14	0	0	10646	logfile
✔	6XPD	22285	2023-08-09	2020-07-08	3.8	3.62	—	3.7	0.007	0.77	0.0	0.04	14.37	0.00	1.461	13.89	0.20	9.4	90.6	0.0	-3.83	0.60	0.85	1.65	3.6	0.004	0.74	0.0	0.04	16.57	0.00	1.952	11.43	0.78	5.4	94.6	0.0	1.02	1.38	0.60	0.83	2.03	4622	606	4	0	4	0	0	logfile
✔	8GXX	34364	2023-08-20	2022-09-21	3.0	2.61	3.12	2.9	0.006	0.56	0.0	0.04	11.56	0.00	1.758	5.57	0.06	3.0	96.9	0.0	0.65	0.67	0.82	3.77	2.8	0.003	0.59	0.0	0.04	16.97	0.00	1.956	7.51	2.76	2.1	97.9	0.0	0.94	1.10	0.74	0.85	3.19	29553	3788	15	0	5	0	0	logfile
✔	7TYN	26188	2023-08-11	2022-02-13	2.6	2.72	2.56	2.8	0.004	0.62	1.0	0.05	13.17	0.00	2.216	5.53	2.01	1.2	98.8	0.0	-2.90	0.67	0.81	3.62	2.8	0.003	0.57	0.0	0.04	16.14	0.00	2.216	6.44	2.85	1.8	98.2	0.0	1.08	0.49	0.69	0.84	2.91	9364	1154	7	0	18	0	0	logfile
✔	7VQ4	32085	2023-08-09	2021-10-19	3.2	3.54	—	3.6	0.007	0.74	0.0	0.04	16.10	0.00	2.155	9.59	2.30	6.6	93.4	0.0	-1.96	0.61	0.79	1.10	3.7	0.003	0.69	0.0	0.04	17.32	0.00	2.224	8.97	0.43	4.2	95.8	0.0	2.91	0.79	0.59	0.78	0.16	6306	800	2	0	0	0	0	logfile
✔	8G6K	29772	2023-08-11	2023-02-15	3.6	3.71	3.52	3.4	0.002	0.48	0.0	0.04	4.19	0.00	2.523	0.20	0.00	2.7	97.3	0.0	1.65	0.54	0.71	—	3.5	0.003	0.60	0.0	0.04	4.50	0.00	2.284	2.64	0.00	6.7	93.3	0.0	0.05	1.47	0.54	0.74	—	9388	1379	7	0	0	0	2576	logfile
✔	8A9Y	15288	2023-08-17	2022-06-29	3.5	4.25	3.38	3.6	0.002	0.48	0.0	0.04	9.99	0.00	2.100	8.53	0.04	4.2	95.7	0.1	0.29	0.72	0.85	2.79	3.6	0.004	0.56	0.0	0.04	11.59	0.00	1.888	9.02	0.24	4.9	95.0	0.1	-0.16	1.54	0.73	0.86	2.90	23688	2988	8	0	2	0	0	logfile
✔	7VQ5	32086	2023-08-09	2021-10-19	3.1	3.31	—	3.3	0.009	0.77	0.0	0.05	14.72	0.00	2.110	7.38	0.14	7.4	92.6	0.0	-3.56	0.66	0.84	2.48	3.3	0.003	0.53	0.0	0.04	16.00	0.00	2.132	7.54	0.29	3.5	96.5	0.0	2.12	1.11	0.63	0.83	1.92	6315	800	2	0	1	0	0	logfile
✔	7TX7	26156	2023-08-09	2022-02-07	3.8	4.02	3.76	3.9	0.008	0.76	0.0	0.07	12.94	0.00	2.072	6.28	0.00	1.8	98.2	0.0	3.77	0.44	0.74	1.59	3.9	0.003	0.77	0.0	0.04	16.58	0.00	2.219	9.34	0.33	2.5	97.5	0.0	2.15	1.32	0.46	0.75	1.83	3203	397	1	0	4	0	0	logfile
✔	8iWE	35765	2023-08-09	2023-03-29	3.4	3.95	3.24	3.8	0.004	0.93	1.0	0.07	16.00	0.00	2.321	10.10	2.84	5.9	94.1	0.0	-0.50	0.58	0.79	2.37	3.8	0.002	0.59	0.0	0.04	15.63	0.00	2.185	4.36	1.42	5.5	94.5	0.0	0.49	1.00	0.60	0.84	1.73	2236	296	1	0	1	0	0	logfile
✔	7QLA	14066	2023-08-10	2021-12-20	3.85	3.91	3.77	3.9	0.003	0.62	0.0	0.04	13.83	0.00	2.117	13.19	0.00	6.4	93.6	0.0	-1.33	0.72	0.76	1.18	3.8	0.003	0.76	0.0	0.04	15.73	0.00	2.136	14.14	0.41	5.3	94.7	0.0	-0.81	0.52	0.73	0.76	1.64	6837	874	2	0	0	0	0	logfile
✔	5MBV	3460	2023-08-18	2016-11-08	3.8	4.14	—	3.8	0.002	0.51	0.0	0.04	10.21	0.00	2.172	7.06	0.74	4.7	95.2	0.1	-3.37	0.87	0.81	0.98	3.8	0.004	0.71	0.0	0.04	13.50	0.00	2.114	12.19	0.23	3.9	96.0	0.0	1.12	0.89	0.88	0.83	1.41	24118	3014	5	0	0	0	0	logfile
✔	7PDG	13337	2023-08-10	2021-08-05	4.3	4.51	—	3.1	0.005	0.82	0.0	0.05	14.59	0.00	2.161	16.17	0.00	5.2	94.8	0.0	-0.49	0.58	0.72	—	3.1	0.003	0.73	0.0	0.04	14.74	0.00	2.173	12.63	0.00	4.3	95.7	0.0	0.21	0.88	0.58	0.72	—	7642	970	2	0	0	0	0	logfile
✔	8FYF	29572	2023-08-13	2023-01-26	3.4	3.26	3.38	3.4	0.003	0.58	0.0	0.04	14.09	0.00	2.218	5.61	0.14	2.7	97.3	0.0	2.89	0.57	0.83	1.72	3.3	0.003	0.52	0.0	0.04	14.55	0.00	2.209	5.68	0.14	2.4	97.6	0.0	3.58	0.93	0.55	0.85	1.53	13202	830	4	0	0	0	6754	logfile
✔	7UC2	26442	2023-08-14	2022-03-15	2.5	2.71	2.55	2.8	0.009	0.94	0.0	0.05	19.35	0.00	2.199	8.35	1.02	1.9	98.1	0.0	0.65	0.75	0.87	4.24	2.8	0.003	0.53	0.0	0.04	18.79	0.00	2.144	8.44	3.06	2.1	97.9	0.0	0.26	0.36	0.75	0.89	4.12	15820	1900	12	0	8	28	0	logfile
✔	7oNi	12995	2023-08-10	2021-05-25	3.4	3.65	3.17	3.3	0.003	0.53	0.0	0.04	14.04	0.00	1.323	7.13	0.00	4.2	95.8	0.0	0.82	0.87	0.85	2.39	3.3	0.003	0.57	0.0	0.04	15.85	0.00	2.221	7.18	0.45	4.5	95.5	0.0	1.20	0.39	0.88	0.87	2.13	8840	1141	6	0	7	0	0	logfile

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