Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RZQ	24774	2023-02-16	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.003	0.31	0.0	0.03	15.07	0.00	2.343	5.71	0.00	0.0	100.0	0.0	5.84	0.30	0.82	0.82	2.01	2421	322	6	0	0	0	0	logfile
✔	7RZT	24777	2023-02-16	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.0	0.003	0.32	0.0	0.03	15.52	0.00	2.337	5.44	0.35	0.0	100.0	0.0	6.26	0.24	0.80	0.83	2.93	2451	324	6	0	0	0	0	logfile
✔	7RX5	24725	2023-02-19	2021-08-21	3.4	3.65	—	3.6	0.002	0.25	0.0	0.03	11.98	0.00	2.288	5.05	0.00	0.0	100.0	0.0	4.54	0.70	0.85	3.58	3.6	0.003	0.35	0.0	0.03	13.46	0.00	2.257	6.36	0.00	0.0	100.0	0.0	5.01	0.27	0.71	0.88	2.75	9120	1160	40	0	0	0	0	logfile
✔	7QV5	14167	2023-02-17	2022-01-19	3.0	3.03	1.88	3.0	0.010	0.44	0.0	0.06	9.44	0.00	2.689	1.08	0.00	6.2	93.8	0.0	-2.64	0.46	0.86	7.89	3.1	0.002	0.35	0.0	0.06	12.33	0.00	2.576	1.08	0.00	1.0	99.0	0.0	-1.49	0.87	0.50	0.90	6.84	5562	342	27	0	18	0	2997	logfile
✔	7RZR	24775	2023-02-16	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.002	0.36	0.0	0.03	15.29	0.00	2.294	4.44	0.71	0.0	100.0	0.0	6.53	0.31	0.81	0.83	3.42	2448	324	6	0	0	0	0	logfile
✔	7RZV	24779	2023-02-16	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.37	0.0	0.03	15.99	0.00	2.228	4.86	0.67	0.0	100.0	0.0	5.66	0.87	0.83	0.83	1.88	2562	339	6	0	0	0	0	logfile
✔	7QV6	14168	2023-02-17	2022-01-19	3.5	3.33	3.32	3.5	0.011	0.59	0.0	0.05	11.56	0.00	2.480	1.86	0.00	1.1	98.9	0.0	-1.85	0.39	0.86	5.72	3.5	0.002	0.39	0.0	0.06	11.93	0.00	2.389	1.45	0.00	0.0	100.0	0.0	0.74	0.46	0.40	0.86	5.96	4842	306	18	0	0	0	2556	logfile
✔	8CZi	27098	2023-02-16	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.004	0.39	0.0	0.03	15.18	0.00	2.140	5.65	0.34	0.0	100.0	0.0	5.55	0.85	0.83	0.84	1.84	2550	339	6	0	0	0	0	logfile
✔	7RZS	24776	2023-02-16	2021-08-27	2.52	2.32	—	2.1	0.005	0.46	0.0	0.03	14.73	0.00	2.273	3.04	0.00	1.0	99.0	0.0	1.98	0.77	0.79	1.82	2.0	0.003	0.42	0.0	0.04	16.16	0.00	2.327	4.66	0.35	0.0	100.0	0.0	5.95	1.19	0.79	0.82	1.19	2445	324	6	0	0	0	0	logfile
✔	8BQE	16183	2023-02-20	2022-11-21	3.5	3.35	3.52	3.5	0.013	0.68	0.0	0.08	12.13	0.00	2.159	3.42	0.00	1.2	98.8	0.0	1.72	0.72	0.85	1.92	3.5	0.002	0.43	0.0	0.03	14.43	0.00	2.199	4.33	0.20	1.2	98.8	0.0	2.73	1.39	0.71	0.85	1.29	11274	1452	24	0	90	0	0	logfile
✔	7Xo0	33332	2023-02-16	2022-04-30	3.0	2.48	1.85	3.1	0.001	0.39	0.0	0.05	16.62	0.00	2.280	4.76	0.00	5.0	95.0	0.0	-2.66	0.47	0.87	7.11	3.1	0.003	0.43	0.0	0.05	17.01	0.00	2.241	5.71	1.94	5.8	94.2	0.0	-2.86	0.38	0.47	0.87	6.51	2550	372	6	0	0	0	0	logfile
✔	7STM	25433	2023-02-25	2021-11-14	3.02	3.45	—	3.3	0.008	0.93	0.0	0.05	10.40	0.00	2.229	1.33	0.31	2.4	97.6	0.0	2.06	0.68	0.82	3.32	3.2	0.002	0.43	0.0	0.04	12.45	0.00	2.023	2.11	0.00	3.5	96.2	0.3	2.38	3.61	0.66	0.85	2.89	25040	1602	4	0	12	0	12100	logfile
✔	7oZU	13135	2023-02-18	2021-06-28	3.3	3.27	3.22	3.4	0.007	0.52	0.0	0.04	12.44	0.00	2.218	6.22	0.00	3.1	96.9	0.0	0.39	0.62	0.79	3.13	3.4	0.002	0.44	0.0	0.04	14.77	0.00	2.075	7.07	0.23	2.0	98.0	0.0	0.75	1.90	0.75	0.85	3.04	8408	991	6	22	2	0	0	logfile
✔	7MGM	23829	2023-02-24	2021-04-12	3.1	3.35	3.11	3.0	0.004	0.55	0.0	0.04	14.02	0.00	1.874	5.80	0.04	2.4	97.6	0.0	0.78	0.87	0.89	2.62	3.0	0.002	0.44	0.0	0.04	14.91	0.00	1.983	5.55	0.07	1.9	98.1	0.0	1.60	0.21	0.87	0.90	2.28	24079	2964	4	0	6	0	0	logfile
✔	7PW4	13674	2023-02-23	2021-10-06	3.27	3.69	—	3.5	0.003	0.62	0.0	0.15	13.04	0.00	2.030	4.58	0.00	2.8	97.2	0.0	1.69	0.79	0.82	2.05	3.5	0.002	0.44	0.0	0.03	14.23	0.00	1.933	3.81	0.06	2.5	97.5	0.0	1.97	0.89	0.81	0.85	1.77	18965	2435	5	0	199	0	0	logfile
✔	7LPC	23476	2023-02-21	2021-02-11	3.06	2.87	2.85	3.1	0.013	1.23	0.0	0.21	20.11	0.00	2.188	5.69	0.00	2.0	98.0	0.0	0.83	0.64	0.80	2.87	3.1	0.002	0.44	0.0	0.03	14.73	0.00	2.212	6.03	0.07	2.4	97.6	0.0	2.33	0.57	0.66	0.84	2.71	15256	1816	8	0	40	0	0	logfile
✔	7oRK	13040	2023-02-22	2021-06-06	3.1	3.05	—	3.1	0.007	0.79	2.0	0.05	13.44	0.00	1.996	5.31	1.04	3.2	96.8	0.0	0.32	0.83	0.89	4.27	3.1	0.002	0.45	0.0	0.04	14.54	0.00	2.001	5.72	0.10	2.6	97.4	0.0	1.11	0.72	0.83	0.90	3.94	18699	2182	7	36	5	48	0	logfile
✔	7PXE	13700	2023-02-26	2021-10-08	2.38	2.90	2.41	2.7	0.005	0.73	0.0	0.04	16.55	0.00	2.151	5.31	1.94	1.0	99.0	0.0	1.17	0.79	0.87	3.74	2.7	0.002	0.45	0.0	0.04	16.00	0.00	2.170	4.81	2.07	1.4	98.6	0.0	1.73	0.33	0.79	0.89	4.13	28928	3540	12	0	36	136	0	logfile
✔	7TC7	25804	2023-02-23	2021-12-23	2.9	2.75	—	2.9	0.007	0.58	0.0	0.04	13.89	0.00	1.792	14.53	0.17	2.3	97.7	0.0	1.00	0.72	0.86	4.97	2.9	0.003	0.45	0.0	0.04	15.84	0.00	1.868	14.91	0.79	2.2	97.8	0.0	1.54	1.09	0.73	0.87	4.39	20567	2113	8	0	4	0	3200	logfile
✔	7ZiR	14738	2023-02-16	2022-04-08	2.5	2.51	2.04	2.7	0.002	0.34	0.0	0.03	9.02	0.00	2.317	1.65	0.00	2.0	98.0	0.0	-3.82	0.48	0.90	7.46	2.7	0.003	0.46	0.0	0.04	12.12	0.00	2.316	0.28	0.00	2.9	97.1	0.0	-3.83	1.03	0.50	0.93	7.96	2120	255	10	0	0	50	0	logfile

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