Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6ZLG	11265	2021-09-05	2020-06-30	3.0	3.18	—	3.1	0.003	0.44	0.0	0.03	16.50	0.00	2.180	7.60	4.15	0.1	99.9	0.0	1.26	0.80	0.87	2.98	3.1	0.002	0.37	0.0	0.03	17.92	0.00	2.140	5.93	2.64	1.5	98.5	0.0	5.31	1.61	0.82	0.89	2.59	33008	4072	24	0	0	0	0	logfile
✔	7oZU	13135	2021-09-02	2021-06-28	3.3	3.27	3.22	3.4	0.007	0.53	0.0	0.04	12.44	0.00	2.218	6.22	0.00	3.1	96.9	0.0	0.39	0.62	0.79	3.13	3.4	0.002	0.43	0.0	0.04	14.72	0.00	2.088	6.95	0.23	2.2	97.8	0.0	0.87	2.66	0.76	0.85	3.04	8408	991	6	21	3	0	0	logfile
✔	6PXM	20521	2021-09-05	2019-07-26	2.1	2.33	2.32	2.4	0.008	0.71	0.0	0.04	16.03	0.00	2.392	1.61	0.00	0.6	99.4	0.0	-3.44	0.79	0.89	5.35	2.3	0.002	0.43	0.0	0.03	17.65	0.00	2.202	3.26	0.09	1.8	98.2	0.0	5.35	1.49	0.78	0.89	3.87	32736	4080	24	0	0	0	0	logfile
✔	7JGG	22326	2021-09-02	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	53.16	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.5	0.002	0.44	0.0	0.03	12.81	0.00	1.979	76.11	0.00	4.9	95.1	0.0	1.73	1.85	0.68	0.70	—	4210	506	1	0	0	0	28	logfile
✔	6WL1	21815	2021-09-03	2020-04-17	4.0	4.02	—	4.0	0.007	0.81	0.0	0.05	7.85	0.00	2.413	3.17	0.00	0.0	100.0	0.0	-1.08	0.71	0.85	—	4.0	0.003	0.45	0.0	0.03	16.27	0.00	2.295	7.01	1.18	0.0	100.0	0.0	6.53	0.73	0.72	0.86	—	14612	1872	52	0	0	0	0	logfile
✔	7LPC	23476	2021-09-03	2021-02-11	3.06	2.87	2.85	3.1	0.012	1.70	0.0	0.21	20.94	0.00	2.188	5.59	0.00	2.0	98.0	0.0	0.83	0.64	0.80	2.87	3.1	0.002	0.45	0.0	0.03	14.90	0.00	2.225	5.53	0.07	2.5	97.5	0.0	2.44	1.21	0.66	0.84	2.59	15256	1816	8	0	40	0	0	logfile
✔	6C9i	7436	2021-09-04	2018-01-26	3.09	3.21	—	3.2	0.029	1.48	0.0	0.12	9.22	0.01	2.417	0.75	0.00	0.3	99.6	0.1	2.36	0.79	0.85	4.97	3.2	0.004	0.46	0.0	0.04	15.03	0.00	2.234	5.01	0.24	0.0	100.0	0.0	3.65	2.43	0.73	0.89	3.79	23700	3087	24	0	0	0	0	logfile
✔	3J89	6123	2021-09-02	2014-10-07	3.6	2.21	—	3.5	0.022	1.64	0.0	0.10	11.97	0.01	2.578	0.00	0.00	3.5	96.5	0.0	-0.96	0.83	0.81	0.77	3.2	0.003	0.46	0.0	0.03	20.47	0.00	2.143	7.98	0.75	0.2	99.8	0.0	4.21	2.00	0.81	0.79	0.30	9025	551	19	0	0	0	4598	logfile
✔	7oZV	13138	2021-09-02	2021-06-28	3.2	3.08	3.16	3.3	0.007	0.59	0.0	0.04	13.29	0.01	2.202	8.35	0.00	2.6	97.4	0.0	-0.22	0.64	0.79	3.09	3.3	0.002	0.46	0.0	0.04	15.38	0.00	2.159	7.56	0.00	2.6	97.4	0.0	0.23	2.66	0.73	0.82	2.60	8409	991	6	21	3	0	0	logfile
✔	6U6i	20666	2021-09-05	2019-08-29	3.12	3.43	—	3.4	0.006	0.45	0.0	0.07	11.24	0.00	2.029	5.98	0.00	7.6	92.4	0.0	-3.59	0.80	0.80	4.39	3.3	0.002	0.47	0.0	0.04	12.96	0.00	2.043	5.43	0.00	5.2	94.8	0.0	0.20	1.19	0.81	0.84	4.06	21701	1496	8	0	11	0	10337	logfile
✔	6ZBL	11157	2021-09-06	2020-06-08	3.6	4.39	3.70	4.0	0.014	1.20	0.0	0.07	14.69	0.01	2.400	1.54	0.00	0.7	99.3	0.0	-0.56	0.87	0.79	1.33	4.0	0.002	0.47	0.0	0.03	15.52	0.00	1.997	3.86	0.09	1.1	98.9	0.0	4.53	1.37	0.88	0.82	0.85	39074	2326	4	0	0	0	19788	logfile
✔	6WCB	21605	2021-09-03	2020-03-30	3.17	3.17	—	3.2	0.005	0.41	0.0	0.03	13.87	0.00	2.128	2.50	1.29	0.8	99.2	0.0	0.58	0.55	0.77	2.89	3.2	0.002	0.47	0.0	0.03	15.68	0.00	2.040	3.62	0.00	1.5	98.5	0.0	3.79	1.32	0.56	0.79	2.12	11647	734	6	0	7	40	5904	logfile
✔	7P0Z	13153	2021-09-03	2021-07-01	2.43	2.02	2.18	2.2	0.016	0.94	0.0	0.06	14.02	0.01	2.141	7.21	0.00	4.3	95.7	0.0	1.90	0.83	0.86	2.91	2.3	0.002	0.47	0.0	0.03	18.25	0.00	2.223	4.02	1.34	1.2	98.8	0.0	5.81	0.57	0.82	0.86	1.74	12873	1652	7	0	0	0	0	logfile
✔	6PUZ	20485	2021-09-03	2019-07-18	2.8	3.10	2.87	3.1	0.008	0.87	0.0	0.05	19.45	0.01	0.000	5.85	0.19	2.2	97.8	0.0	-2.67	0.74	0.89	4.50	3.0	0.002	0.47	0.0	0.04	21.19	0.00	0.000	7.83	1.06	2.0	98.0	0.0	0.83	0.42	0.72	0.90	4.04	11702	1230	28	72	10	340	0	logfile
✔	6XKY	22229	2021-09-06	2020-06-27	3.2	3.13	3.17	3.2	0.006	0.55	0.0	0.03	10.04	0.00	1.588	4.66	0.48	1.5	98.5	0.0	2.67	0.52	0.86	2.05	3.2	0.004	0.48	0.0	0.03	14.15	0.00	2.043	4.50	0.26	1.9	98.1	0.0	3.59	0.50	0.52	0.88	1.80	38760	5420	20	0	0	0	0	logfile
✔	6o0X	0583	2021-09-03	2019-02-17	3.28	3.97	—	3.6	0.005	0.74	0.0	0.04	16.67	0.01	2.317	2.65	0.14	6.2	93.8	0.0	-4.06	0.85	0.88	2.75	3.6	0.002	0.48	0.0	0.03	17.09	0.00	2.236	5.41	0.14	3.5	96.5	0.0	0.19	1.24	0.84	0.87	2.51	11257	1112	5	150	0	0	0	logfile
✔	6U5S	20654	2021-09-05	2019-08-28	3.07	3.44	—	3.4	0.003	0.41	0.0	0.07	12.04	0.00	2.078	5.93	0.00	3.3	96.7	0.0	-3.21	0.81	0.80	4.41	3.3	0.003	0.48	0.0	0.04	13.66	0.00	2.129	6.89	0.00	3.4	96.6	0.0	0.18	1.25	0.84	0.85	4.11	21461	1504	8	0	20	0	9755	logfile
✔	6ZNH	11311	2021-09-03	2020-07-06	3.6	3.61	3.56	3.6	0.006	0.84	0.0	0.04	13.44	0.00	2.160	4.03	3.03	2.6	97.4	0.0	0.52	0.57	0.83	1.42	3.6	0.003	0.48	0.0	0.04	15.57	0.00	2.247	4.06	0.13	1.6	98.4	0.0	4.67	1.15	0.57	0.82	1.49	14191	1817	23	0	0	0	0	logfile
✔	6ZBC	11150	2021-09-04	2020-06-08	3.1	3.91	3.31	3.6	0.007	1.02	0.0	0.05	13.80	0.00	2.449	0.97	0.00	1.3	98.7	0.0	-0.79	0.85	0.80	2.24	3.6	0.002	0.48	0.0	0.03	15.15	0.00	2.042	4.10	0.00	1.1	98.9	0.0	4.73	0.89	0.86	0.82	1.38	19534	1160	4	0	0	0	9902	logfile
✔	6VPS	21316	2021-09-02	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.89	6.11	2.7	0.002	0.48	0.0	0.03	19.69	0.00	2.391	3.50	1.63	6.9	93.1	0.0	-3.67	1.20	0.47	0.87	6.71	2736	279	9	0	0	0	0	logfile

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