Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6ZLG	11265	2022-04-08	2020-06-30	3.0	3.18	—	3.1	0.003	0.44	0.0	0.03	16.50	0.00	2.180	7.60	4.15	0.1	99.9	0.0	1.26	0.80	0.87	2.98	3.1	0.003	0.39	0.0	0.03	17.79	0.00	2.131	6.39	3.02	1.5	98.5	0.0	5.23	1.17	0.81	0.89	2.69	33008	4072	24	0	0	0	0	logfile
✔	7MGM	23829	2022-04-07	2021-04-12	3.1	3.35	3.11	3.0	0.004	0.55	0.0	0.04	14.02	0.00	1.874	5.80	0.04	2.4	97.6	0.0	0.78	0.87	0.89	2.62	3.0	0.002	0.43	0.0	0.04	14.90	0.00	1.981	5.68	0.07	1.8	98.2	0.0	1.66	0.21	0.87	0.90	2.25	24079	2964	4	0	6	0	0	logfile
✔	6ZNH	11311	2022-04-05	2020-07-06	3.6	3.61	3.56	3.6	0.006	0.84	0.0	0.04	13.44	0.00	2.160	4.03	3.03	2.6	97.4	0.0	0.52	0.57	0.83	1.42	3.6	0.002	0.44	0.0	0.03	15.61	0.00	2.229	4.24	0.20	1.4	98.6	0.0	4.86	1.15	0.57	0.82	1.34	14191	1817	23	0	0	0	0	logfile
✔	6QPi	4614	2022-04-04	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.002	0.44	0.0	0.04	4.28	0.00	2.462	1.49	0.00	2.8	97.2	0.0	2.25	1.20	0.41	0.62	—	2288	462	2	0	0	0	0	logfile
✔	7PXE	13700	2022-04-07	2021-10-08	2.38	2.90	2.41	2.7	0.005	0.73	0.0	0.04	16.55	0.00	2.151	5.31	1.94	1.0	99.0	0.0	1.17	0.79	0.87	3.74	2.7	0.002	0.44	0.0	0.04	16.04	0.00	2.159	5.05	2.20	1.2	98.8	0.0	1.73	0.33	0.79	0.89	4.24	28928	3540	12	0	36	136	0	logfile
✔	6PXM	20521	2022-04-08	2019-07-26	2.1	2.33	2.32	2.4	0.008	0.71	0.0	0.04	16.03	0.00	2.392	1.60	0.00	0.6	99.4	0.0	-3.44	0.79	0.89	5.35	2.3	0.002	0.44	0.0	0.03	17.75	0.00	2.211	4.41	0.14	1.8	98.2	0.0	5.26	1.48	0.79	0.90	3.80	32736	4080	24	0	0	0	0	logfile
✔	7SFJ	25079	2022-04-04	2021-10-04	2.74	3.33	—	3.4	0.007	0.97	0.0	0.04	18.56	0.01	2.308	3.87	1.28	2.5	97.5	0.0	2.20	0.62	0.78	3.51	3.4	0.002	0.45	0.0	0.04	17.44	0.00	2.219	5.02	0.85	3.2	96.8	0.0	2.48	0.47	0.57	0.77	3.02	7377	852	9	0	24	3	0	logfile
✔	7ooA	13008	2022-04-05	2021-05-27	2.7	2.63	2.63	2.6	0.006	0.73	0.0	0.05	15.29	0.00	2.256	5.81	0.00	0.4	99.6	0.0	2.71	0.71	0.86	4.30	2.6	0.002	0.45	0.0	0.04	16.94	0.00	2.220	5.75	1.15	1.3	98.7	0.0	1.77	1.12	0.71	0.87	3.94	15610	1834	14	0	35	0	0	logfile
✔	7MQH	23947	2022-04-07	2021-05-05	3.1	3.00	3.04	3.2	0.007	0.81	0.0	0.06	12.35	0.00	2.350	2.29	0.00	1.0	99.0	0.0	0.95	0.79	0.86	5.69	3.2	0.002	0.45	0.0	0.04	13.57	0.00	2.290	4.18	0.66	1.9	98.1	0.0	1.09	0.37	0.82	0.88	5.19	12736	1640	16	16	0	0	0	logfile
✔	7LGU	23329	2022-04-05	2021-01-21	2.3	2.77	—	2.7	0.003	0.93	0.0	0.04	14.18	0.00	2.197	8.08	1.15	1.6	98.4	0.0	1.41	0.64	0.84	5.76	2.7	0.002	0.45	0.0	0.04	14.54	0.00	2.136	5.06	0.71	1.8	98.2	0.0	1.55	0.22	0.64	0.85	5.47	11597	1360	6	0	110	111	0	logfile
✔	7K0N	22604	2022-04-06	2020-09-04	3.1	3.55	—	3.5	0.004	0.69	0.0	0.04	13.94	0.00	2.227	6.22	0.32	2.5	97.5	0.0	0.72	0.73	0.82	2.88	3.5	0.002	0.46	0.0	0.04	15.15	0.00	2.254	5.63	0.05	1.9	98.1	0.0	1.24	0.34	0.73	0.83	2.55	18470	2340	14	0	18	0	0	logfile
✔	6MRT	9212	2022-04-04	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.46	0.0	0.03	15.43	0.00	2.226	3.14	1.29	0.5	99.5	0.0	5.71	3.08	0.73	0.87	2.07	26868	3420	12	0	0	0	0	logfile
✔	7S6D	24875	2022-04-05	2021-09-13	3.1	3.82	—	3.4	0.005	0.71	0.0	0.04	13.49	0.00	2.083	3.29	0.00	3.4	96.6	0.0	-0.10	0.86	0.81	3.05	3.4	0.002	0.46	0.0	0.04	14.12	0.00	2.020	5.54	0.00	3.4	96.6	0.0	0.42	1.12	0.86	0.83	2.96	46193	3112	8	0	1	0	22846	logfile
✔	7oo6	13006	2022-04-05	2021-05-26	3.1	2.92	2.88	3.0	0.005	0.63	0.0	0.05	10.97	0.00	2.327	9.05	0.00	1.5	98.5	0.0	2.48	0.63	0.80	2.67	3.0	0.003	0.46	0.0	0.04	13.94	0.00	2.358	7.46	0.20	1.3	98.7	0.0	2.23	1.13	0.65	0.83	2.25	14546	1827	14	0	14	0	0	logfile
✔	7JM9	22390	2022-04-09	2020-07-31	2.5	2.71	2.65	2.7	0.009	1.47	0.0	0.07	13.53	0.00	2.291	3.08	0.56	1.1	98.9	0.0	0.10	0.62	0.82	5.25	2.7	0.002	0.46	0.0	0.04	13.55	0.00	2.085	6.32	1.27	1.4	98.6	0.0	3.63	0.72	0.64	0.85	4.54	41136	2328	36	0	168	156	18876	logfile
✔	7JGG	22326	2022-04-04	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	54.13	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.5	0.002	0.46	0.0	0.03	12.61	0.00	1.976	80.22	0.00	4.5	95.5	0.0	1.72	1.70	0.67	0.69	—	4210	506	1	0	0	0	28	logfile
✔	6U6i	20666	2022-04-08	2019-08-29	3.12	3.43	—	3.4	0.006	0.45	0.0	0.07	11.24	0.00	2.029	6.07	0.00	7.6	92.4	0.0	-3.59	0.80	0.80	4.39	3.3	0.002	0.46	0.0	0.04	12.86	0.00	2.081	5.39	0.00	4.8	95.2	0.0	0.08	0.50	0.81	0.83	4.07	21701	1496	8	0	11	0	10337	logfile
✔	6MRU	9213	2022-04-04	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.002	0.46	0.0	0.03	13.26	0.00	2.192	3.53	0.00	0.6	99.4	0.0	5.66	3.08	0.75	0.86	1.81	29107	3705	13	0	0	0	0	logfile
✔	6X0V	21985	2022-04-04	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.46	0.0	0.04	13.09	0.00	2.230	19.17	0.00	6.0	94.0	0.0	2.59	1.22	0.40	0.75	—	1384	211	4	0	0	0	62	logfile
✔	7oNJ	12996	2022-04-06	2021-05-25	2.3	2.52	2.24	2.5	0.011	0.97	0.0	0.06	18.45	0.00	2.155	8.48	0.47	0.8	99.2	0.0	-0.25	0.76	0.88	5.16	2.5	0.003	0.46	0.0	0.04	18.21	0.00	2.171	7.75	0.47	0.8	99.2	0.0	2.22	1.55	0.76	0.89	4.35	16947	1834	21	0	63	266	0	logfile

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