Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SCA	25031	2023-04-20	2021-09-27	2.1	2.23	2.15	2.2	0.011	1.14	7.0	0.07	15.33	0.01	2.057	5.44	0.78	1.0	99.0	0.0	2.17	0.79	0.85	5.74	2.2	0.002	0.55	0.0	0.04	16.60	0.00	2.121	8.28	0.87	0.9	99.1	0.0	2.87	1.09	0.79	0.85	5.28	55437	6836	116	0	54	1325	0	logfile
✔	7WSG	32757	2023-04-22	2022-01-29	3.03	3.29	—	3.2	0.003	0.52	0.0	0.04	12.82	0.00	2.058	10.65	4.60	2.7	97.3	0.0	-1.05	0.70	0.70	2.71	3.2	0.002	0.59	0.0	0.04	15.41	0.00	2.079	12.73	0.29	3.4	96.6	0.0	-0.22	0.94	0.71	0.73	2.03	6413	787	3	0	1	0	0	logfile
✔	7QTL	14144	2023-04-24	2022-01-14	2.48	2.85	2.48	2.5	0.007	0.66	0.0	0.04	17.25	0.01	1.988	8.61	3.98	2.4	97.6	0.0	-1.53	0.89	0.86	4.27	2.5	0.002	0.55	0.0	0.04	17.21	0.00	1.460	7.67	2.04	1.9	98.1	0.0	0.95	4.18	0.91	0.90	3.84	18397	2152	14	44	4	120	0	logfile
✔	7RR7	24654	2023-04-26	2021-08-09	3.05	3.60	3.05	3.5	0.005	0.77	2.0	0.05	14.15	0.00	2.201	8.22	0.28	3.1	96.9	0.0	0.40	0.76	0.85	2.89	3.5	0.002	0.53	0.0	0.04	14.05	0.00	2.122	8.20	0.28	2.3	97.7	0.0	0.93	0.33	0.77	0.88	2.40	23734	3061	6	0	27	0	0	logfile
✔	7WGC	32483	2023-04-20	2021-12-28	3.6	3.85	—	3.8	0.003	0.63	0.0	0.04	14.80	0.00	2.191	10.26	0.00	3.8	96.2	0.0	-0.11	0.56	0.55	1.21	3.8	0.002	0.61	0.0	0.04	16.25	0.00	2.170	10.73	0.43	4.2	95.8	0.0	0.33	0.37	0.56	0.54	0.98	6527	795	4	0	5	0	0	logfile
✔	7Y9X	33695	2023-04-24	2022-06-26	2.49	2.67	2.52	2.7	0.004	0.52	0.0	0.04	9.50	0.00	2.130	5.49	0.31	1.6	98.4	0.0	-0.15	0.70	0.82	4.82	2.7	0.002	0.48	0.0	0.04	14.67	0.00	2.206	6.55	1.30	1.4	98.6	0.0	1.17	1.95	0.67	0.82	3.94	18662	2192	4	38	4	0	0	logfile
✔	6RWL	10041	2023-04-24	2019-06-05	3.36	3.67	3.45	3.6	0.003	0.56	0.0	0.04	16.02	0.00	2.348	2.63	2.86	3.1	96.9	0.0	-3.04	0.70	0.83	2.24	3.6	0.002	0.52	0.0	0.04	18.83	0.00	2.273	5.54	0.23	3.1	96.9	0.0	1.24	1.54	0.71	0.85	2.06	18272	2076	24	86	8	0	0	logfile
✔	8i1T	35121	2023-04-26	2023-01-13	2.8	2.69	2.76	2.7	0.007	0.70	0.0	0.05	14.07	0.00	2.196	7.64	0.08	3.2	96.6	0.2	-1.01	0.58	0.87	4.08	2.7	0.002	0.55	0.0	0.04	15.55	0.00	2.181	7.49	1.30	2.5	97.3	0.2	-0.65	0.28	0.58	0.88	3.21	22939	3003	7	0	0	0	0	logfile
✔	7oLA	12975	2023-04-25	2021-05-19	3.3	3.85	3.21	3.3	0.004	0.59	0.0	0.04	15.07	0.00	2.023	7.61	0.00	2.7	97.3	0.0	1.22	0.88	0.85	2.96	3.3	0.002	0.49	0.0	0.04	15.96	0.00	1.985	8.52	0.00	2.6	97.4	0.0	1.16	0.89	0.88	0.89	2.86	19719	2394	10	0	7	0	0	logfile
✔	7ZGR	14712	2023-04-23	2022-04-04	2.6	3.01	2.54	2.8	0.003	0.56	0.0	0.05	14.68	0.00	2.181	8.43	1.24	5.7	94.1	0.2	-0.53	0.82	0.92	4.71	2.8	0.002	0.56	0.0	0.05	15.46	0.00	2.192	8.78	2.36	5.9	93.9	0.2	-0.75	0.23	0.82	0.92	4.54	14505	1819	7	4	2	0	0	logfile
✔	7T10	25586	2023-04-20	2021-11-30	2.5	2.70	—	2.8	0.005	1.00	0.0	0.06	12.36	0.01	2.235	3.61	0.73	3.0	97.0	0.0	0.62	0.64	0.83	4.77	2.8	0.002	0.57	0.0	0.04	13.76	0.00	2.268	2.39	0.73	2.3	97.7	0.0	1.52	0.91	0.64	0.83	3.88	8429	1146	9	0	0	5	0	logfile
✔	8AGC	15420	2023-04-24	2022-07-19	3.1	3.40	3.13	3.3	0.009	1.06	0.0	0.06	16.26	0.01	2.139	7.10	3.53	4.8	95.1	0.1	-1.13	0.77	0.89	3.83	3.3	0.002	0.59	0.0	0.04	15.85	0.00	2.126	5.32	0.27	2.8	97.2	0.0	0.63	1.02	0.77	0.90	3.51	17764	2152	20	0	33	0	0	logfile
✔	7X6A	33019	2023-04-29	2022-03-07	3.5	3.86	—	3.8	0.002	0.52	0.0	0.04	14.04	0.00	1.981	7.25	0.06	6.2	93.5	0.4	-1.29	0.76	0.78	1.61	3.8	0.002	0.59	0.0	0.04	15.95	0.00	2.124	6.71	0.21	6.0	93.6	0.4	-0.96	1.67	0.76	0.80	1.92	30879	3969	9	0	0	0	0	logfile
✔	8DXR	27774	2023-04-21	2022-08-02	4.0	4.31	4.01	4.2	0.004	0.81	0.0	0.04	5.27	0.00	2.255	1.54	0.00	11.6	88.3	0.1	-0.80	0.67	0.71	—	4.2	0.002	0.51	0.0	0.04	3.77	0.00	2.420	0.60	0.00	8.3	91.6	0.1	1.47	0.34	0.67	0.71	—	10435	2101	7	0	0	0	0	logfile
✔	7K0N	22604	2023-04-24	2020-09-04	3.1	3.55	—	3.5	0.004	0.69	0.0	0.04	13.94	0.00	2.227	6.22	0.32	2.5	97.5	0.0	0.72	0.73	0.82	2.88	3.5	0.002	0.48	0.0	0.04	15.30	0.00	2.253	5.17	0.05	2.0	98.0	0.0	1.15	1.06	0.72	0.84	2.63	18470	2340	14	0	18	0	0	logfile
✔	7TZF	26208	2023-04-21	2022-02-15	2.4	2.00	2.20	2.3	0.004	0.53	0.0	0.04	14.56	0.00	2.252	4.74	1.43	1.0	99.0	0.0	-2.36	0.54	0.77	4.70	2.0	0.002	0.55	0.0	0.04	16.89	0.00	2.212	5.33	1.72	1.7	98.3	0.0	0.92	0.83	0.56	0.82	4.60	10342	1272	13	0	19	25	0	logfile
✔	6XiW	22203	2023-04-22	2020-06-22	2.8	3.04	—	3.0	0.005	0.86	0.0	0.04	15.93	0.00	2.257	2.98	0.79	3.8	96.2	0.0	-1.79	0.55	0.85	3.36	3.0	0.002	0.54	0.0	0.04	17.30	0.00	2.240	5.88	1.82	2.2	97.8	0.0	2.00	2.52	0.53	0.87	2.47	11819	1400	4	0	12	5	0	logfile
✔	7WK8	32562	2023-04-20	2022-01-08	3.61	2.50	—	2.3	0.004	0.74	0.0	0.05	8.51	0.01	2.262	5.72	0.22	3.9	95.9	0.2	-1.34	0.77	0.76	3.80	2.3	0.002	0.61	0.0	0.04	12.68	0.00	2.180	8.01	0.00	2.6	97.2	0.2	0.29	1.24	0.79	0.78	4.41	3982	516	4	0	0	0	0	logfile
✔	7Q4D	13803	2023-04-25	2021-10-30	3.78	4.08	3.81	3.9	0.008	1.01	0.0	0.06	13.70	0.01	1.859	4.92	0.00	2.5	97.5	0.0	-1.89	0.83	0.80	3.21	3.9	0.002	0.58	0.0	0.03	15.64	0.00	1.443	8.30	0.19	2.6	97.4	0.0	1.38	1.31	0.82	0.79	1.68	20098	1216	18	0	58	0	9462	logfile
✔	8AQV	15591	2023-04-20	2022-08-13	2.96	3.40	3.09	3.4	0.003	0.71	0.0	0.04	13.07	0.00	2.164	4.53	0.00	4.8	94.5	0.6	-1.32	0.64	0.80	2.89	3.4	0.002	0.62	0.0	0.04	16.31	0.00	2.193	5.80	1.60	4.7	94.8	0.5	0.25	0.55	0.62	0.80	1.99	6447	789	4	0	3	0	0	logfile

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