Table showing results for November 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5YWP	6855	2021-11-03	2017-11-29	4.6	5.26	—	20.0	0.005	0.98	0.0	0.05	9.48	0.01	2.023	48.26	0.00	7.3	92.1	0.6	-3.63	0.12	0.02	—	40.0	0.003	0.72	0.0	0.04	11.03	0.00	2.116	12.92	0.09	4.4	95.2	0.4	-0.68	1.90	0.15	0.01	—	19561	2588	10	0	0	0	0	logfile
✔	6KKT	0702	2021-11-01	2019-07-27	2.9	2.94	—	7.1	0.010	1.16	0.0	0.06	10.98	0.01	2.343	4.35	0.34	3.6	96.4	0.0	-3.62	0.12	0.00	0.17	20.0	0.012	1.28	1.0	0.04	12.47	0.00	1.536	11.93	1.25	2.9	97.1	0.0	0.60	0.59	0.14	0.05	0.53	8416	1074	4	0	24	0	0	logfile
✔	6RJU	4906	2021-11-01	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	3.9	0.003	0.66	0.0	0.03	15.88	0.00	2.278	10.06	0.00	7.0	93.0	0.0	-0.85	1.71	0.30	0.06	-3.11	1992	131	1	0	0	0	997	logfile
✔	5M6S	3451	2021-11-01	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.5	0.003	0.68	0.0	0.03	19.02	0.00	1.968	8.79	0.00	4.2	95.8	0.0	1.55	2.66	0.04	0.08	—	1593	98	1	0	0	0	793	logfile
✔	6KKR	0701	2021-11-01	2019-07-27	2.9	2.91	—	20.0	0.008	1.10	0.0	0.06	10.85	0.01	2.348	3.23	0.23	3.9	96.1	0.0	-3.53	0.05	0.00	-0.07	2.8	0.008	0.88	1.0	0.04	12.93	0.00	2.171	9.58	2.27	3.1	96.9	0.0	0.96	1.67	0.12	0.11	0.25	8416	1074	4	0	24	0	0	logfile
✔	6RED	4850	2021-11-04	2019-04-12	3.0	3.22	3.14	27.0	0.012	1.04	0.0	0.06	14.48	0.01	2.140	5.83	0.31	4.7	95.2	0.1	-3.86	0.16	0.02	0.19	27.0	0.008	0.97	1.0	0.04	15.75	0.00	1.976	17.59	1.91	3.8	96.1	0.1	-0.70	0.99	0.24	0.14	0.21	33899	4503	25	0	10	0	0	logfile
✔	7MQH	23947	2021-11-03	2021-05-05	3.1	3.00	3.04	3.2	0.007	0.81	0.0	0.06	12.35	0.00	2.350	2.29	0.00	1.0	99.0	0.0	0.95	0.79	0.86	5.69	7.8	0.003	0.47	0.0	0.04	13.69	0.00	2.337	3.50	0.41	2.4	97.6	0.0	0.79	0.36	0.31	0.14	5.77	12736	1640	16	16	0	0	0	logfile
✔	6REU	4857	2021-11-04	2019-04-12	4.2	4.32	4.74	30.0	0.006	0.99	0.0	0.06	15.07	0.01	1.681	9.40	0.42	5.7	94.1	0.1	-4.88	0.21	0.03	—	30.0	0.006	0.90	0.0	0.04	14.02	0.00	1.892	19.70	0.03	4.9	94.9	0.1	-1.75	0.98	0.26	0.15	—	33899	4503	25	0	10	0	0	logfile
✔	5M5H	4155	2021-11-01	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.93	0.0	0.05	12.53	0.01	2.441	20.17	0.00	8.7	91.3	0.0	-1.24	2.82	0.15	0.15	—	1086	132	1	0	0	0	0	logfile
✔	7CHH	30374	2021-11-04	2020-07-05	3.49	2.44	—	20.0	0.007	1.09	0.0	0.06	15.08	0.01	2.182	4.88	3.56	5.2	94.7	0.1	-2.03	0.17	0.02	0.23	2.3	0.010	1.13	3.0	0.05	16.32	0.01	1.997	18.23	0.06	6.9	93.0	0.1	-1.58	1.52	0.22	0.15	0.50	29029	3704	17	0	41	0	0	logfile
✔	6Z5U	11082	2021-11-02	2020-05-27	3.9	4.52	—	38.0	0.021	1.87	10.0	0.11	12.07	0.01	0.901	4.89	1.69	2.0	97.7	0.3	-0.47	0.18	0.03	-0.06	4.5	0.018	1.29	1.0	0.05	14.55	0.00	1.860	14.61	0.05	4.8	95.2	0.0	0.22	1.66	0.29	0.17	0.75	17880	2334	14	0	4	0	0	logfile
✔	7MQG	23946	2021-11-03	2021-05-05	3.25	3.02	3.18	3.1	0.006	0.78	0.0	0.05	12.18	0.00	2.191	2.87	0.00	1.2	98.8	0.0	0.73	0.72	0.82	4.53	7.8	0.006	0.60	0.0	0.05	14.24	0.00	2.056	3.11	0.42	3.6	96.4	0.0	0.50	0.42	0.28	0.17	4.21	12670	1640	16	16	0	0	0	logfile
✔	6CFZ	7469	2021-11-11	2018-02-19	4.5	4.66	5.81	4.7	0.010	1.19	0.0	0.05	9.79	0.01	0.321	11.03	0.00	6.6	92.9	0.4	-0.45	0.25	0.19	—	4.5	0.007	1.04	0.0	0.06	14.19	0.01	1.832	52.64	0.00	12.8	87.2	0.0	-2.52	2.41	0.26	0.19	—	204102	12937	170	0	0	0	102272	logfile
✔	6GYL	0091	2021-11-05	2018-06-30	4.8	4.06	4.25	12.0	0.008	0.47	0.0	0.04	11.68	0.00	0.860	9.20	0.16	6.2	92.8	1.0	-3.33	0.32	0.00	—	3.5	0.009	1.01	0.0	0.04	14.51	0.01	1.850	21.08	0.00	5.9	93.9	0.3	-1.13	1.30	0.50	0.19	—	43409	5250	30	112	11	0	0	logfile
✔	6VN1	21247	2021-11-04	2020-01-29	2.8	2.97	2.75	3.0	0.006	0.63	0.0	0.05	13.28	0.00	2.123	7.67	0.00	6.3	93.7	0.0	-3.36	0.70	0.80	3.79	3.0	0.004	0.66	0.0	0.05	16.03	0.00	2.170	7.10	2.59	6.3	93.7	0.0	-1.16	0.45	0.29	0.20	3.44	19524	2454	9	0	0	0	0	logfile
✔	6EK0	3883	2021-11-16	2017-09-24	2.9	3.27	—	40.0	0.012	1.13	0.0	0.06	16.18	0.03	0.883	4.04	0.81	9.4	90.4	0.3	-5.00	0.02	0.00	0.01	3.2	0.005	1.04	2.0	0.05	18.31	0.01	1.105	24.96	2.44	11.2	88.7	0.1	-3.02	1.75	0.15	0.20	0.16	219596	11719	128	5861	415	61	0	logfile
✔	5VZL	8749	2021-11-02	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	14.28	0.01	2.216	7.72	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	17.0	0.011	1.14	1.0	0.04	15.64	0.00	1.217	12.59	0.25	5.7	94.3	0.0	-1.15	1.41	0.39	0.20	0.37	13915	1451	3	115	1	0	0	logfile
✔	6FLQ	4275	2021-11-04	2018-01-26	3.6	3.93	3.76	40.0	0.016	1.33	0.0	0.07	14.73	0.01	1.897	5.97	1.40	10.8	89.1	0.1	-4.32	0.16	0.02	0.21	3.6	0.006	0.94	0.0	0.04	17.04	0.01	2.026	14.87	0.29	8.8	91.1	0.1	-1.66	2.16	0.27	0.22	0.28	30201	3868	10	91	3	0	0	logfile
✔	7EGB	31111	2021-11-02	2021-03-24	3.3	3.51	—	34.0	0.008	1.11	62.0	0.07	15.42	0.01	1.322	21.10	3.22	7.3	91.9	0.8	-3.64	0.32	0.02	0.13	3.1	0.010	1.19	6.0	0.06	17.01	0.01	1.783	28.57	0.43	9.0	90.7	0.3	-1.51	1.27	0.42	0.22	0.30	113098	13887	63	138	18	0	0	logfile
✔	6Q97	4476	2021-11-10	2018-12-17	3.9	3.69	—	20.0	0.011	1.20	0.0	0.16	18.93	0.02	1.320	6.98	0.38	10.1	89.8	0.1	-5.34	0.15	0.01	0.22	3.6	0.007	0.97	3.0	0.05	20.92	0.01	1.102	23.15	0.06	9.1	90.9	0.0	-3.79	2.62	0.28	0.23	0.27	156609	6124	72	5051	441	2	0	logfile

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