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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6RJU | 4906 | 2022-04-04 | 2019-04-29 | 3.2 | 4.49 | 2.14 | 10.0 | 0.007 | 0.93 | 0.0 | 0.05 | 15.36 | 0.00 | 2.423 | 4.52 | 0.00 | 11.6 | 88.4 | 0.0 | -7.10 | 0.22 | -0.01 | -0.80 | 10.0 | 0.003 | 0.66 | 0.0 | 0.03 | 16.23 | 0.00 | 2.422 | 6.03 | 0.00 | 3.9 | 96.1 | 0.0 | -0.32 | 1.40 | 0.27 | 0.03 | -0.67 | 1992 | 131 | 1 | 0 | 0 | 0 | 997 | logfile |
✔ | 5M6S | 3451 | 2022-04-04 | 2016-10-25 | 4.8 | 5.27 | — | 6.5 | 0.005 | 0.84 | 0.0 | 0.04 | 27.97 | 0.00 | 2.447 | 23.24 | 44.05 | 7.3 | 89.6 | 3.1 | -5.37 | 0.01 | 0.04 | — | 5.3 | 0.003 | 0.66 | 0.0 | 0.03 | 19.58 | 0.00 | 1.949 | 10.68 | 0.00 | 6.2 | 93.8 | 0.0 | 2.28 | 2.49 | 0.03 | 0.06 | — | 1593 | 98 | 1 | 0 | 0 | 0 | 793 | logfile |
✔ | 6KKR | 0701 | 2022-04-04 | 2019-07-27 | 2.9 | 2.91 | — | 20.0 | 0.008 | 1.10 | 0.0 | 0.06 | 10.99 | 0.01 | 2.348 | 3.23 | 0.23 | 3.9 | 96.1 | 0.0 | -3.53 | 0.05 | 0.00 | -0.07 | 2.8 | 0.003 | 0.77 | 0.0 | 0.04 | 13.11 | 0.00 | 2.105 | 13.45 | 2.15 | 4.1 | 95.9 | 0.0 | 0.35 | 1.64 | 0.12 | 0.11 | 0.38 | 8416 | 1074 | 4 | 0 | 24 | 0 | 0 | logfile |
✔ | 7CHH | 30374 | 2022-04-07 | 2020-07-05 | 3.49 | 2.44 | — | 20.0 | 0.007 | 1.09 | 0.0 | 0.06 | 15.08 | 0.01 | 2.182 | 4.88 | 3.56 | 5.2 | 94.7 | 0.1 | -2.03 | 0.17 | 0.02 | 0.23 | 2.3 | 0.012 | 1.17 | 0.0 | 0.05 | 15.96 | 0.01 | 1.918 | 20.20 | 0.00 | 6.6 | 93.4 | 0.0 | -1.77 | 1.33 | 0.21 | 0.12 | 0.40 | 29029 | 3704 | 17 | 0 | 41 | 0 | 0 | logfile |
✔ | 5MSH | 3565 | 2022-04-04 | 2017-01-04 | 4.25 | 3.96 | — | 20.0 | 0.014 | 1.56 | 0.0 | 0.07 | 9.56 | 0.01 | 2.323 | 3.07 | 0.00 | 6.1 | 92.5 | 1.5 | -0.93 | 0.01 | 0.02 | — | 3.7 | 0.009 | 1.40 | 0.0 | 0.05 | 13.33 | 0.01 | 2.113 | 15.72 | 0.00 | 6.4 | 93.4 | 0.2 | -0.82 | 2.65 | 0.04 | 0.13 | — | 4287 | 551 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Z5U | 11082 | 2022-04-06 | 2020-05-27 | 3.9 | 4.52 | — | 38.0 | 0.021 | 1.88 | 10.0 | 0.11 | 11.93 | 0.01 | 0.901 | 4.89 | 1.69 | 2.0 | 97.7 | 0.3 | -0.47 | 0.18 | 0.03 | -0.06 | 4.1 | 0.008 | 0.89 | 1.0 | 0.04 | 14.43 | 0.01 | 2.092 | 11.96 | 0.15 | 4.7 | 95.2 | 0.0 | -0.06 | 1.51 | 0.27 | 0.13 | 0.35 | 17880 | 2334 | 14 | 0 | 4 | 0 | 0 | logfile |
✔ | 5M5H | 4155 | 2022-04-04 | 2016-10-21 | 4.5 | 2.29 | — | 2.2 | 0.007 | 1.50 | 0.0 | 0.08 | 12.37 | 0.01 | 2.186 | 39.89 | 0.00 | 8.7 | 88.9 | 2.4 | -5.94 | 0.14 | 0.14 | — | 2.1 | 0.004 | 0.94 | 0.0 | 0.05 | 12.39 | 0.01 | 2.260 | 21.55 | 0.00 | 7.9 | 92.1 | 0.0 | -1.85 | 2.19 | 0.15 | 0.14 | — | 1086 | 132 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RED | 4850 | 2022-04-08 | 2019-04-12 | 3.0 | 3.22 | 3.14 | 27.0 | 0.012 | 1.04 | 0.0 | 0.06 | 14.48 | 0.01 | 2.140 | 5.83 | 0.31 | 4.7 | 95.2 | 0.1 | -3.86 | 0.16 | 0.02 | 0.19 | 27.0 | 0.008 | 0.95 | 1.0 | 0.04 | 16.14 | 0.01 | 1.576 | 21.90 | 2.38 | 4.8 | 95.0 | 0.2 | -1.22 | 0.93 | 0.24 | 0.15 | 0.26 | 33899 | 4503 | 25 | 0 | 10 | 0 | 0 | logfile |
✔ | 6FLQ | 4275 | 2022-04-07 | 2018-01-26 | 3.6 | 3.93 | 3.76 | 40.0 | 0.016 | 1.33 | 0.0 | 0.07 | 14.73 | 0.01 | 1.897 | 5.97 | 1.40 | 10.8 | 89.1 | 0.1 | -4.32 | 0.16 | 0.02 | 0.21 | 3.6 | 0.008 | 1.04 | 1.0 | 0.04 | 16.84 | 0.01 | 1.605 | 17.69 | 0.04 | 8.4 | 91.5 | 0.1 | -1.51 | 1.95 | 0.24 | 0.17 | 0.16 | 30201 | 3868 | 10 | 91 | 3 | 0 | 0 | logfile |
✔ | 6GYL | 0091 | 2022-04-09 | 2018-06-30 | 4.8 | 4.06 | 4.25 | 12.0 | 0.008 | 0.47 | 0.0 | 0.04 | 11.68 | 0.00 | 0.860 | 9.20 | 0.16 | 6.2 | 92.8 | 1.0 | -3.33 | 0.32 | 0.00 | — | 3.4 | 0.009 | 1.01 | 3.0 | 0.05 | 14.53 | 0.01 | 1.407 | 24.03 | 0.02 | 6.3 | 93.4 | 0.3 | -1.66 | 1.22 | 0.50 | 0.18 | — | 43409 | 5250 | 30 | 112 | 11 | 0 | 0 | logfile |
✔ | 6EK0 | 3883 | 2022-04-21 | 2017-09-24 | 2.9 | 3.27 | — | 40.0 | 0.012 | 1.13 | 0.0 | 0.06 | 16.18 | 0.03 | 0.883 | 4.04 | 0.81 | 9.4 | 90.4 | 0.3 | -5.00 | 0.02 | 0.00 | 0.01 | 3.2 | 0.005 | 1.01 | 0.0 | 0.04 | 18.19 | 0.01 | 1.000 | 22.19 | 3.38 | 10.8 | 89.1 | 0.1 | -3.11 | 0.96 | 0.13 | 0.18 | 0.11 | 219596 | 11719 | 128 | 5864 | 412 | 61 | 0 | logfile |
✔ | 6REU | 4857 | 2022-04-08 | 2019-04-12 | 4.2 | 4.32 | 4.74 | 30.0 | 0.006 | 0.99 | 0.0 | 0.06 | 15.07 | 0.01 | 1.681 | 9.40 | 0.42 | 5.7 | 94.1 | 0.1 | -4.88 | 0.21 | 0.03 | — | 30.0 | 0.009 | 1.01 | 1.0 | 0.05 | 14.11 | 0.01 | 1.882 | 22.11 | 0.03 | 7.6 | 92.3 | 0.1 | -2.44 | 1.06 | 0.27 | 0.19 | — | 33899 | 4503 | 25 | 0 | 10 | 0 | 0 | logfile |
✔ | 6Qi8 | 4552 | 2022-04-05 | 2019-01-18 | 3.75 | 3.92 | — | 10.4 | 0.004 | 0.91 | 0.0 | 0.05 | 16.35 | 0.01 | 1.999 | 4.27 | 0.19 | 5.5 | 94.5 | 0.0 | -5.84 | 0.17 | 0.02 | 0.43 | 9.9 | 0.003 | 0.79 | 0.0 | 0.04 | 17.50 | 0.00 | 2.186 | 11.15 | 0.38 | 6.1 | 93.9 | 0.0 | -1.55 | 1.45 | 0.30 | 0.19 | 0.26 | 14789 | 1907 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 6TQM | 10555 | 2022-04-09 | 2019-12-16 | 3.8 | 4.34 | 3.78 | 20.0 | 0.014 | 0.98 | 0.0 | 0.12 | 15.01 | 0.01 | 2.083 | 4.06 | 1.40 | 14.5 | 85.5 | 0.0 | -5.95 | 0.30 | 0.07 | 0.30 | 3.8 | 0.011 | 1.11 | 1.0 | 0.04 | 15.94 | 0.00 | 1.851 | 15.45 | 0.43 | 10.5 | 89.5 | 0.0 | -3.67 | 1.07 | 0.36 | 0.21 | 0.31 | 39616 | 2578 | 6 | 0 | 4 | 0 | 19804 | logfile |
✔ | 6Q97 | 4476 | 2022-04-16 | 2018-12-17 | 3.9 | 3.69 | — | 20.0 | 0.011 | 1.20 | 0.0 | 0.16 | 18.93 | 0.02 | 1.320 | 6.98 | 0.38 | 10.1 | 89.8 | 0.1 | -5.34 | 0.15 | 0.01 | 0.22 | 3.6 | 0.008 | 1.00 | 0.0 | 0.05 | 20.31 | 0.01 | 0.925 | 23.58 | 0.12 | 10.6 | 89.4 | 0.0 | -3.47 | 2.14 | 0.26 | 0.21 | 0.31 | 156609 | 6124 | 72 | 5051 | 441 | 2 | 0 | logfile |
✔ | 7EGB | 31111 | 2022-04-05 | 2021-03-24 | 3.3 | 3.51 | — | 34.0 | 0.008 | 1.11 | 62.0 | 0.07 | 15.42 | 0.01 | 1.322 | 21.10 | 3.22 | 7.3 | 91.9 | 0.8 | -3.64 | 0.32 | 0.02 | 0.13 | 3.0 | 0.012 | 1.17 | 5.0 | 0.06 | 16.92 | 0.01 | 1.750 | 23.60 | 0.45 | 8.5 | 91.3 | 0.2 | -1.54 | 1.12 | 0.42 | 0.21 | 0.07 | 113098 | 13887 | 63 | 138 | 18 | 0 | 0 | logfile |
✔ | 5VZL | 8749 | 2022-04-05 | 2017-05-29 | 3.9 | 4.38 | — | 19.0 | 0.006 | 0.96 | 0.0 | 0.05 | 14.28 | 0.01 | 2.216 | 7.72 | 0.25 | 8.4 | 91.6 | 0.0 | -4.13 | 0.31 | 0.03 | -0.03 | 17.0 | 0.010 | 1.23 | 1.0 | 0.05 | 16.68 | 0.01 | 1.239 | 23.62 | 0.25 | 9.1 | 90.9 | 0.0 | -2.51 | 2.13 | 0.41 | 0.22 | 0.62 | 13915 | 1451 | 3 | 115 | 1 | 0 | 0 | logfile |
✔ | 5GAK | 3227 | 2022-04-07 | 2015-12-09 | 3.88 | 4.13 | — | 19.0 | 0.006 | 0.94 | 0.0 | 0.06 | 20.85 | 0.01 | 0.816 | 23.91 | 0.26 | 9.2 | 90.2 | 0.7 | -3.81 | 0.21 | 0.02 | 0.28 | 3.8 | 0.006 | 0.94 | 3.0 | 0.05 | 19.64 | 0.01 | 1.918 | 24.84 | 0.40 | 9.8 | 89.8 | 0.4 | -2.82 | 1.75 | 0.32 | 0.23 | 0.19 | 128975 | 6434 | 50 | 3597 | 234 | 0 | 0 | logfile |
✔ | 6H5i | 0140 | 2022-04-04 | 2018-07-24 | 3.9 | 3.87 | — | 23.0 | 0.006 | 0.81 | 0.0 | 0.05 | 10.47 | 0.01 | 2.196 | 2.63 | 0.17 | 4.3 | 95.7 | 0.0 | -1.74 | 0.29 | 0.06 | 0.15 | 3.8 | 0.005 | 0.83 | 0.0 | 0.04 | 15.12 | 0.01 | 1.992 | 18.13 | 0.63 | 4.7 | 95.3 | 0.0 | 0.75 | 1.92 | 0.38 | 0.26 | 0.19 | 43900 | 5392 | 26 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LTJ | 0974 | 2022-04-08 | 2020-01-22 | 3.7 | 4.16 | — | 15.0 | 0.010 | 1.08 | 12.0 | 0.07 | 22.08 | 0.01 | 2.173 | 14.05 | 2.63 | 6.4 | 93.3 | 0.3 | -3.67 | 0.46 | 0.08 | 0.04 | 9.6 | 0.010 | 1.10 | 2.0 | 0.05 | 22.65 | 0.01 | 1.911 | 26.33 | 0.09 | 5.2 | 94.8 | 0.0 | -1.05 | 1.51 | 0.59 | 0.27 | 0.44 | 34283 | 3656 | 21 | 238 | 1 | 0 | 0 | logfile |