Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6RJU	4906	2022-04-04	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	10.0	0.003	0.66	0.0	0.03	16.23	0.00	2.422	6.03	0.00	3.9	96.1	0.0	-0.32	1.40	0.27	0.03	-0.67	1992	131	1	0	0	0	997	logfile
✔	5M6S	3451	2022-04-04	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.3	0.003	0.66	0.0	0.03	19.58	0.00	1.949	10.68	0.00	6.2	93.8	0.0	2.28	2.49	0.03	0.06	—	1593	98	1	0	0	0	793	logfile
✔	6KKR	0701	2022-04-04	2019-07-27	2.9	2.91	—	20.0	0.008	1.10	0.0	0.06	10.99	0.01	2.348	3.23	0.23	3.9	96.1	0.0	-3.53	0.05	0.00	-0.07	2.8	0.003	0.77	0.0	0.04	13.11	0.00	2.105	13.45	2.15	4.1	95.9	0.0	0.35	1.64	0.12	0.11	0.38	8416	1074	4	0	24	0	0	logfile
✔	7CHH	30374	2022-04-07	2020-07-05	3.49	2.44	—	20.0	0.007	1.09	0.0	0.06	15.08	0.01	2.182	4.88	3.56	5.2	94.7	0.1	-2.03	0.17	0.02	0.23	2.3	0.012	1.17	0.0	0.05	15.96	0.01	1.918	20.20	0.00	6.6	93.4	0.0	-1.77	1.33	0.21	0.12	0.40	29029	3704	17	0	41	0	0	logfile
✔	5MSH	3565	2022-04-04	2017-01-04	4.25	3.96	—	20.0	0.014	1.56	0.0	0.07	9.56	0.01	2.323	3.07	0.00	6.1	92.5	1.5	-0.93	0.01	0.02	—	3.7	0.009	1.40	0.0	0.05	13.33	0.01	2.113	15.72	0.00	6.4	93.4	0.2	-0.82	2.65	0.04	0.13	—	4287	551	2	0	0	0	0	logfile
✔	6Z5U	11082	2022-04-06	2020-05-27	3.9	4.52	—	38.0	0.021	1.88	10.0	0.11	11.93	0.01	0.901	4.89	1.69	2.0	97.7	0.3	-0.47	0.18	0.03	-0.06	4.1	0.008	0.89	1.0	0.04	14.43	0.01	2.092	11.96	0.15	4.7	95.2	0.0	-0.06	1.51	0.27	0.13	0.35	17880	2334	14	0	4	0	0	logfile
✔	5M5H	4155	2022-04-04	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.94	0.0	0.05	12.39	0.01	2.260	21.55	0.00	7.9	92.1	0.0	-1.85	2.19	0.15	0.14	—	1086	132	1	0	0	0	0	logfile
✔	6RED	4850	2022-04-08	2019-04-12	3.0	3.22	3.14	27.0	0.012	1.04	0.0	0.06	14.48	0.01	2.140	5.83	0.31	4.7	95.2	0.1	-3.86	0.16	0.02	0.19	27.0	0.008	0.95	1.0	0.04	16.14	0.01	1.576	21.90	2.38	4.8	95.0	0.2	-1.22	0.93	0.24	0.15	0.26	33899	4503	25	0	10	0	0	logfile
✔	6FLQ	4275	2022-04-07	2018-01-26	3.6	3.93	3.76	40.0	0.016	1.33	0.0	0.07	14.73	0.01	1.897	5.97	1.40	10.8	89.1	0.1	-4.32	0.16	0.02	0.21	3.6	0.008	1.04	1.0	0.04	16.84	0.01	1.605	17.69	0.04	8.4	91.5	0.1	-1.51	1.95	0.24	0.17	0.16	30201	3868	10	91	3	0	0	logfile
✔	6GYL	0091	2022-04-09	2018-06-30	4.8	4.06	4.25	12.0	0.008	0.47	0.0	0.04	11.68	0.00	0.860	9.20	0.16	6.2	92.8	1.0	-3.33	0.32	0.00	—	3.4	0.009	1.01	3.0	0.05	14.53	0.01	1.407	24.03	0.02	6.3	93.4	0.3	-1.66	1.22	0.50	0.18	—	43409	5250	30	112	11	0	0	logfile
✔	6EK0	3883	2022-04-21	2017-09-24	2.9	3.27	—	40.0	0.012	1.13	0.0	0.06	16.18	0.03	0.883	4.04	0.81	9.4	90.4	0.3	-5.00	0.02	0.00	0.01	3.2	0.005	1.01	0.0	0.04	18.19	0.01	1.000	22.19	3.38	10.8	89.1	0.1	-3.11	0.96	0.13	0.18	0.11	219596	11719	128	5864	412	61	0	logfile
✔	6REU	4857	2022-04-08	2019-04-12	4.2	4.32	4.74	30.0	0.006	0.99	0.0	0.06	15.07	0.01	1.681	9.40	0.42	5.7	94.1	0.1	-4.88	0.21	0.03	—	30.0	0.009	1.01	1.0	0.05	14.11	0.01	1.882	22.11	0.03	7.6	92.3	0.1	-2.44	1.06	0.27	0.19	—	33899	4503	25	0	10	0	0	logfile
✔	6Qi8	4552	2022-04-05	2019-01-18	3.75	3.92	—	10.4	0.004	0.91	0.0	0.05	16.35	0.01	1.999	4.27	0.19	5.5	94.5	0.0	-5.84	0.17	0.02	0.43	9.9	0.003	0.79	0.0	0.04	17.50	0.00	2.186	11.15	0.38	6.1	93.9	0.0	-1.55	1.45	0.30	0.19	0.26	14789	1907	12	0	6	0	0	logfile
✔	6TQM	10555	2022-04-09	2019-12-16	3.8	4.34	3.78	20.0	0.014	0.98	0.0	0.12	15.01	0.01	2.083	4.06	1.40	14.5	85.5	0.0	-5.95	0.30	0.07	0.30	3.8	0.011	1.11	1.0	0.04	15.94	0.00	1.851	15.45	0.43	10.5	89.5	0.0	-3.67	1.07	0.36	0.21	0.31	39616	2578	6	0	4	0	19804	logfile
✔	6Q97	4476	2022-04-16	2018-12-17	3.9	3.69	—	20.0	0.011	1.20	0.0	0.16	18.93	0.02	1.320	6.98	0.38	10.1	89.8	0.1	-5.34	0.15	0.01	0.22	3.6	0.008	1.00	0.0	0.05	20.31	0.01	0.925	23.58	0.12	10.6	89.4	0.0	-3.47	2.14	0.26	0.21	0.31	156609	6124	72	5051	441	2	0	logfile
✔	7EGB	31111	2022-04-05	2021-03-24	3.3	3.51	—	34.0	0.008	1.11	62.0	0.07	15.42	0.01	1.322	21.10	3.22	7.3	91.9	0.8	-3.64	0.32	0.02	0.13	3.0	0.012	1.17	5.0	0.06	16.92	0.01	1.750	23.60	0.45	8.5	91.3	0.2	-1.54	1.12	0.42	0.21	0.07	113098	13887	63	138	18	0	0	logfile
✔	5VZL	8749	2022-04-05	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	14.28	0.01	2.216	7.72	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	17.0	0.010	1.23	1.0	0.05	16.68	0.01	1.239	23.62	0.25	9.1	90.9	0.0	-2.51	2.13	0.41	0.22	0.62	13915	1451	3	115	1	0	0	logfile
✔	5GAK	3227	2022-04-07	2015-12-09	3.88	4.13	—	19.0	0.006	0.94	0.0	0.06	20.85	0.01	0.816	23.91	0.26	9.2	90.2	0.7	-3.81	0.21	0.02	0.28	3.8	0.006	0.94	3.0	0.05	19.64	0.01	1.918	24.84	0.40	9.8	89.8	0.4	-2.82	1.75	0.32	0.23	0.19	128975	6434	50	3597	234	0	0	logfile
✔	6H5i	0140	2022-04-04	2018-07-24	3.9	3.87	—	23.0	0.006	0.81	0.0	0.05	10.47	0.01	2.196	2.63	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.8	0.005	0.83	0.0	0.04	15.12	0.01	1.992	18.13	0.63	4.7	95.3	0.0	0.75	1.92	0.38	0.26	0.19	43900	5392	26	0	0	0	0	logfile
✔	6LTJ	0974	2022-04-08	2020-01-22	3.7	4.16	—	15.0	0.010	1.08	12.0	0.07	22.08	0.01	2.173	14.05	2.63	6.4	93.3	0.3	-3.67	0.46	0.08	0.04	9.6	0.010	1.10	2.0	0.05	22.65	0.01	1.911	26.33	0.09	5.2	94.8	0.0	-1.05	1.51	0.59	0.27	0.44	34283	3656	21	238	1	0	0	logfile

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