Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7FiJ	31599	2022-11-29	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.3	0.007	0.96	0.0	0.05	12.41	0.00	2.193	14.37	2.50	18.3	81.7	0.0	-2.16	0.76	0.61	0.55	2.86	3061	561	1	0	0	0	0	logfile
✔	7N5G	24189	2022-11-29	2021-06-05	2.4	2.16	2.42	1.5	0.022	1.51	0.0	0.09	10.57	0.01	2.386	0.34	0.00	0.8	99.2	0.0	1.84	0.40	0.79	3.64	1.5	0.003	0.56	0.0	0.04	16.74	0.00	2.228	4.78	2.28	1.4	98.6	0.0	2.95	1.21	0.39	0.80	2.58	2926	371	1	0	1	0	0	logfile
✔	7MDW	23782	2022-11-29	2021-04-06	3.58	2.25	3.45	1.5	0.002	0.54	0.0	0.04	12.63	0.00	2.293	8.46	0.00	6.5	93.5	0.0	-1.58	0.52	0.44	1.65	1.5	0.002	0.55	0.0	0.04	14.37	0.00	2.292	11.94	0.28	7.7	92.3	0.0	-2.34	0.98	0.54	0.46	1.66	3392	435	4	0	1	0	0	logfile
✔	7N5F	24188	2022-11-29	2021-06-05	2.7	2.27	2.74	2.0	0.023	1.50	0.0	0.10	9.99	0.01	2.468	0.16	0.00	1.3	98.7	0.0	1.68	0.36	0.75	3.32	1.7	0.003	0.56	0.0	0.04	17.43	0.00	2.324	7.74	0.95	1.3	98.7	0.0	2.60	0.79	0.35	0.77	3.26	3037	386	1	0	1	0	0	logfile
✔	7P6A	13223	2022-11-29	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.003	0.65	0.0	0.05	14.09	0.00	2.291	4.28	0.00	4.7	95.3	0.0	-2.61	0.82	0.55	0.89	7.80	4166	540	10	0	0	76	0	logfile
✔	7RZV	24779	2022-11-29	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.36	0.0	0.03	15.90	0.00	2.235	5.24	0.34	0.0	100.0	0.0	5.91	0.88	0.83	0.82	1.88	2562	339	6	0	0	0	0	logfile
✔	7RZQ	24774	2022-11-29	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.003	0.30	0.0	0.03	15.08	0.00	2.337	5.30	0.36	0.0	100.0	0.0	5.90	0.30	0.81	0.82	1.87	2421	322	6	0	0	0	0	logfile
✔	7TiK	25912	2022-11-29	2022-01-13	2.4	2.38	—	2.0	0.007	0.49	0.0	0.04	16.31	0.00	2.218	8.52	0.00	4.6	95.4	0.0	1.31	0.77	0.80	1.31	2.0	0.004	0.49	0.0	0.04	16.44	0.00	2.228	10.65	1.01	0.3	99.7	0.0	5.49	0.93	0.79	0.80	1.38	2565	339	6	0	0	0	0	logfile
✔	8CZi	27098	2022-11-29	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.004	0.40	0.0	0.03	15.24	0.00	2.167	6.23	0.00	0.0	100.0	0.0	5.34	0.86	0.83	0.83	1.97	2550	339	6	0	0	0	0	logfile
✔	3KTT	5148	2022-11-29	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	180.45	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	2.0	0.004	1.18	0.0	0.05	17.18	0.01	2.023	26.84	0.49	9.4	89.6	1.0	-2.22	1.72	0.31	0.41	—	3855	513	1	0	0	0	0	logfile
✔	7RZR	24775	2022-11-29	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.003	0.35	0.0	0.03	15.28	0.00	2.325	4.84	0.35	0.0	100.0	0.0	6.56	0.32	0.81	0.82	3.42	2448	324	6	0	0	0	0	logfile
✔	7RZT	24777	2022-11-29	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.0	0.003	0.32	0.0	0.03	15.54	0.00	2.332	5.44	0.35	0.0	100.0	0.0	6.21	0.24	0.80	0.82	3.03	2451	324	6	0	0	0	0	logfile
✔	7RZS	24776	2022-11-29	2021-08-27	2.52	2.32	—	2.1	0.005	0.46	0.0	0.03	14.73	0.00	2.273	3.04	0.00	1.0	99.0	0.0	1.98	0.77	0.79	1.82	2.0	0.003	0.43	0.0	0.04	15.95	0.00	2.318	4.66	0.71	0.0	100.0	0.0	5.82	1.18	0.78	0.81	1.27	2445	324	6	0	0	0	0	logfile
✔	7WoG	32651	2022-11-29	2022-01-21	4.06	2.95	—	2.0	0.001	0.41	0.0	0.04	8.09	0.00	2.293	10.22	3.78	8.0	92.0	0.0	-3.98	0.51	0.51	—	2.0	0.003	0.73	0.0	0.04	10.85	0.01	2.047	20.44	0.00	13.8	86.2	0.0	-2.46	1.00	0.54	0.54	—	3362	433	3	0	0	0	0	logfile
✔	7RZU	24778	2022-11-29	2021-08-27	2.3	2.32	—	2.0	0.006	0.50	0.0	0.04	13.61	0.01	2.212	7.50	0.00	2.9	97.1	0.0	1.69	0.77	0.78	1.84	2.0	0.005	0.52	0.0	0.03	15.91	0.00	2.234	8.11	1.75	0.0	100.0	0.0	4.99	0.49	0.80	0.81	1.62	2439	324	6	0	0	0	0	logfile
✔	7QKL	14046	2022-11-29	2021-12-17	2.07	2.04	1.98	2.0	0.011	2.37	0.0	0.25	12.79	0.01	2.537	0.71	0.00	3.6	96.4	0.0	-1.75	0.40	0.83	7.75	2.0	0.005	0.71	0.0	0.05	17.30	0.00	2.476	5.23	0.25	2.7	97.3	0.0	-1.26	2.03	0.45	0.91	8.23	3468	456	6	0	0	0	0	logfile
✔	7P6B	13224	2022-11-29	2021-07-15	2.2	1.98	2.14	2.1	0.004	0.75	0.0	0.09	13.80	0.01	2.246	4.21	0.00	3.8	96.2	0.0	-2.60	0.48	0.85	6.24	2.0	0.006	0.70	0.0	0.05	17.13	0.00	2.107	8.18	0.65	4.7	95.3	0.0	-2.26	0.86	0.49	0.88	6.83	4060	540	5	0	0	0	0	logfile
✔	5M5H	4155	2022-11-29	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.94	0.0	0.05	12.39	0.01	2.260	21.55	0.00	7.9	92.1	0.0	-1.85	2.19	0.15	0.14	—	1086	132	1	0	0	0	0	logfile
✔	7QWM	14189	2022-11-29	2022-01-25	2.76	2.21	2.43	2.2	0.012	1.93	3.0	0.11	13.26	0.01	2.502	0.62	0.00	8.0	92.0	0.0	-2.89	0.34	0.80	6.86	2.2	0.004	0.70	0.0	0.05	18.21	0.00	2.103	9.84	0.53	6.8	93.2	0.0	-2.77	0.60	0.38	0.82	6.27	3255	405	3	0	0	0	0	logfile
✔	7W3T	32293	2022-11-29	2021-11-26	3.59	2.49	3.54	2.2	0.003	0.60	0.0	0.05	13.93	0.01	2.259	8.96	0.00	4.6	95.4	0.0	-2.83	0.76	0.75	4.00	2.2	0.004	0.65	0.0	0.05	16.04	0.01	2.224	13.09	0.62	6.3	93.7	0.0	-3.15	0.36	0.77	0.76	3.69	1455	176	3	0	7	0	0	logfile

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