Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7A6A	11668	2022-04-07	2020-08-25	1.15	1.13	—	1.2	0.018	1.70	24.0	0.16	14.68	0.01	1.857	3.78	3.03	1.2	98.8	0.0	2.45	0.47	0.61	9.02	1.2	0.003	0.57	0.0	0.04	15.15	0.00	2.188	2.37	1.82	1.8	98.2	0.0	4.61	0.45	0.69	0.82	8.90	41613	4152	72	0	32	4621	0	logfile
✔	7A6B	11669	2022-04-07	2020-08-25	1.33	1.21	—	1.3	0.015	1.60	24.0	0.12	15.34	0.01	1.893	4.97	4.17	1.2	98.8	0.0	2.52	0.52	0.65	9.13	1.3	0.003	0.72	0.0	0.04	14.99	0.01	2.129	3.72	1.79	1.8	98.2	0.0	4.24	0.42	0.76	0.86	9.05	41494	4152	72	0	32	3854	0	logfile
✔	7N5D	24186	2022-04-06	2021-06-05	2.8	2.25	—	1.3	0.023	1.52	0.0	0.09	9.91	0.01	2.378	0.32	0.00	1.1	98.9	0.0	1.83	0.84	0.83	4.14	1.3	0.003	0.62	0.0	0.04	15.99	0.00	2.173	6.76	1.81	1.7	98.3	0.0	2.42	0.65	0.82	0.82	3.12	20593	2612	14	0	7	0	0	logfile
✔	7RRP	24665	2022-04-06	2021-08-10	1.27	1.32	—	1.4	0.003	0.61	0.0	0.04	14.22	0.00	2.007	2.86	0.00	2.4	97.6	0.0	4.01	0.63	0.76	9.05	1.4	0.004	0.72	0.0	0.04	14.38	0.01	2.040	1.87	0.00	1.8	98.2	0.0	3.84	0.41	0.70	0.83	9.05	72254	4128	72	0	278	2496	34080	logfile
✔	7K3V	22657	2022-04-08	2020-09-14	1.34	1.44	—	1.4	0.005	0.79	0.0	0.04	14.68	0.00	0.211	2.71	0.00	1.2	98.8	0.0	3.60	0.69	0.78	8.90	1.4	0.005	0.76	0.0	0.04	14.89	0.01	1.975	1.80	0.00	1.2	98.8	0.0	3.84	0.31	0.73	0.83	8.91	38406	4128	72	0	334	2672	0	logfile
✔	7oUG	13076	2022-04-05	2021-06-11	3.1	2.33	3.12	1.7	0.005	0.73	0.0	0.04	17.64	0.01	1.769	5.59	0.14	2.4	97.6	0.0	0.28	0.78	0.75	2.41	1.5	0.004	0.67	0.0	0.04	19.55	0.01	1.906	9.86	0.62	2.7	97.3	0.0	-0.02	0.64	0.78	0.79	2.39	15090	1664	16	80	10	8	0	logfile
✔	7K3W	22658	2022-04-09	2020-09-14	1.36	1.48	—	1.5	0.005	0.76	0.0	0.04	14.50	0.00	1.934	3.30	0.00	1.8	98.2	0.0	3.35	0.73	0.80	9.05	1.5	0.003	0.65	0.0	0.04	14.77	0.00	2.038	2.63	0.00	1.8	98.2	0.0	4.21	0.17	0.75	0.82	9.20	39086	4128	72	0	382	2680	0	logfile
✔	7M4W	23668	2022-04-08	2021-03-22	2.55	1.74	—	1.6	0.008	0.57	0.0	0.05	15.01	0.01	1.760	3.08	0.02	2.8	97.0	0.2	1.38	0.77	0.74	3.81	1.5	0.008	0.91	0.0	0.05	16.24	0.01	1.619	4.94	2.38	3.6	96.3	0.1	0.19	0.91	0.80	0.78	3.76	137923	5518	76	4373	195	797	0	logfile
✔	7MDW	23782	2022-04-04	2021-04-06	3.58	2.25	3.45	1.5	0.002	0.54	0.0	0.04	12.63	0.00	2.293	8.31	0.00	6.5	93.5	0.0	-1.58	0.52	0.44	1.65	1.5	0.004	0.69	0.0	0.05	14.82	0.00	2.157	18.12	0.56	11.4	88.6	0.0	-3.10	1.35	0.56	0.49	1.70	3392	435	4	0	1	0	0	logfile
✔	7oUF	13075	2022-04-05	2021-06-11	3.0	2.26	3.10	1.7	0.005	0.57	0.0	0.04	17.33	0.00	1.686	6.18	0.14	1.8	98.2	0.0	0.10	0.78	0.75	3.06	1.5	0.010	1.13	1.0	0.05	19.85	0.01	1.886	11.27	1.99	3.3	96.7	0.0	0.10	1.73	0.79	0.79	2.72	15094	1664	16	80	10	12	0	logfile
✔	7N5G	24189	2022-04-04	2021-06-05	2.4	2.16	2.42	1.5	0.022	1.51	0.0	0.09	10.57	0.01	2.386	0.17	0.00	0.8	99.2	0.0	1.84	0.40	0.79	3.64	1.5	0.003	0.56	0.0	0.04	16.74	0.00	2.228	4.78	2.28	1.4	98.6	0.0	2.95	1.21	0.39	0.80	2.58	2926	371	1	0	1	0	0	logfile
✔	7M4Y	23670	2022-04-09	2021-03-22	2.5	1.72	—	1.5	0.008	0.60	2.0	0.05	16.30	0.02	1.783	3.46	2.14	2.5	97.3	0.2	1.41	0.77	0.73	3.74	1.5	0.005	0.79	0.0	0.04	16.55	0.01	1.670	4.70	3.79	3.1	96.7	0.1	0.33	0.30	0.79	0.77	3.89	139817	5511	80	4453	200	1044	0	logfile
✔	7RYH	24740	2022-04-08	2021-08-25	2.43	1.94	—	2.2	0.005	0.63	0.0	0.07	15.90	0.02	1.844	3.77	2.55	2.2	97.7	0.1	1.17	0.77	0.74	2.99	1.6	0.005	0.78	0.0	0.05	16.18	0.01	1.851	5.53	4.94	2.7	97.1	0.1	0.53	0.29	0.78	0.76	3.01	135829	5499	53	4328	8	0	0	logfile
✔	7RYG	24739	2022-04-08	2021-08-25	2.38	1.92	—	2.2	0.006	0.63	0.0	0.07	15.89	0.02	1.799	3.76	2.32	2.6	97.2	0.1	1.15	0.77	0.74	3.06	1.6	0.007	0.91	0.0	0.05	16.36	0.01	1.723	5.31	4.22	3.4	96.5	0.1	0.14	1.13	0.79	0.77	3.19	137579	5505	55	4408	8	0	0	logfile
✔	7KBB	22788	2022-04-04	2020-10-01	4.02	2.37	4.07	2.0	0.006	1.16	0.0	0.06	14.88	0.01	2.073	14.81	1.58	5.4	94.1	0.5	-1.59	0.57	0.58	—	1.6	0.008	1.17	0.0	0.05	14.56	0.01	2.104	15.92	0.00	6.4	93.6	0.0	-0.45	1.23	0.59	0.59	—	6422	812	7	0	0	0	0	logfile
✔	7VX7	32170	2022-04-07	2021-11-12	3.6	2.45	—	1.8	0.010	1.26	1.0	0.07	9.43	0.01	1.349	4.60	0.11	3.8	95.9	0.3	-1.25	0.54	0.44	0.90	1.6	0.005	0.76	0.0	0.05	13.73	0.01	2.081	13.01	0.40	4.7	95.2	0.1	-0.62	0.86	0.64	0.62	1.22	24717	3162	3	0	0	0	0	logfile
✔	7LD0	23278	2022-04-08	2021-01-12	3.1	2.33	3.20	1.9	0.006	0.65	0.0	0.04	13.28	0.01	2.229	9.07	0.00	6.1	93.9	0.0	-2.06	0.76	0.75	1.84	1.6	0.004	0.78	0.0	0.04	16.98	0.00	2.053	10.77	0.33	4.9	95.1	0.0	-0.30	0.60	0.77	0.77	0.86	36976	4720	8	0	0	0	0	logfile
✔	6Z9F	11122	2022-04-07	2020-06-03	1.56	1.61	1.61	1.6	0.015	1.74	48.0	0.10	15.51	0.01	1.782	5.46	3.66	1.7	98.3	0.0	2.70	0.68	0.69	8.63	1.6	0.002	0.57	0.0	0.04	15.00	0.00	2.179	4.97	3.05	1.8	98.2	0.0	4.97	0.98	0.84	0.85	8.54	41020	4152	72	0	32	4172	0	logfile
✔	7SiM	25144	2022-04-05	2021-10-14	2.7	2.00	—	1.6	0.005	0.71	0.0	0.05	13.44	0.00	2.302	7.94	0.07	1.7	98.3	0.0	0.36	0.74	0.72	3.19	1.6	0.009	0.65	0.0	0.04	15.71	0.00	2.184	8.76	1.03	1.6	98.4	0.0	0.59	0.92	0.75	0.76	3.11	12826	1564	8	0	28	0	0	logfile
✔	7RYF	24738	2022-04-08	2021-08-25	2.65	2.01	—	2.3	0.006	0.62	0.0	0.07	15.08	0.02	1.764	4.27	0.02	2.5	97.4	0.1	1.04	0.76	0.73	2.78	1.6	0.006	0.85	0.0	0.05	16.12	0.01	1.778	6.86	2.66	3.2	96.7	0.1	0.11	0.35	0.78	0.76	2.66	137516	5497	55	4408	8	0	0	logfile

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