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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6FU8 | 4319 | 2024-03-10 | 2018-02-26 | 3.2 | 4.43 | 2.98 | 3.8 | 0.013 | 2.11 | 2.0 | 0.10 | 20.18 | 0.02 | 2.617 | 1.47 | 2.78 | 11.2 | 86.2 | 2.5 | -3.87 | 0.17 | 0.42 | 2.23 | 4.0 | 0.004 | 0.81 | 0.0 | 0.04 | 15.68 | 0.00 | 2.242 | 15.40 | 2.78 | 11.2 | 87.5 | 1.2 | -1.93 | 3.97 | 0.23 | 0.60 | -0.89 | 1364 | 82 | 1 | 0 | 0 | 0 | 711 | logfile |
✔ | 7V66 | 31736 | 2024-03-22 | 2021-08-19 | 1.89 | 1.85 | — | 5.2 | 0.006 | 1.02 | 0.0 | 0.07 | 12.14 | 0.01 | 1.929 | 1.89 | 2.07 | 1.9 | 98.0 | 0.0 | 1.97 | 0.09 | 0.05 | 1.38 | 4.1 | 0.006 | 1.44 | 8.0 | 0.04 | 15.60 | 0.01 | 2.233 | 16.30 | 1.64 | 4.1 | 95.9 | 0.0 | 3.25 | 1.24 | 0.14 | 0.12 | -0.77 | 33216 | 4128 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q4W | 13819 | 2024-03-17 | 2021-11-02 | 3.78 | 5.84 | — | 4.5 | 0.005 | 0.84 | 0.0 | 0.05 | 13.85 | 0.01 | 2.186 | 8.26 | 0.52 | 3.1 | 96.8 | 0.0 | -0.36 | 0.83 | 0.65 | -0.36 | 4.5 | 0.006 | 0.83 | 0.0 | 0.05 | 15.45 | 0.00 | 2.105 | 29.90 | 2.17 | 5.9 | 94.1 | 0.0 | -0.67 | 1.30 | 0.92 | 0.85 | -0.70 | 18050 | 2364 | 12 | 0 | 22 | 0 | 0 | logfile |
✔ | 7ZPK | 14856 | 2024-03-20 | 2022-04-27 | 3.81 | 7.29 | 3.88 | 5.6 | 0.004 | 0.81 | 0.0 | 0.05 | 15.30 | 0.02 | 2.214 | 2.12 | 0.68 | 2.8 | 97.2 | 0.0 | 0.04 | 0.81 | 0.55 | -0.44 | 4.0 | 0.003 | 0.67 | 0.0 | 0.04 | 17.36 | 0.00 | 1.910 | 21.18 | 2.63 | 5.7 | 94.3 | 0.0 | 0.37 | 2.36 | 0.86 | 0.72 | -0.64 | 25935 | 1513 | 3 | 55 | 0 | 0 | 12760 | logfile |
✔ | 8ERL | 28554 | 2024-03-11 | 2022-10-12 | 3.9 | 4.58 | 3.40 | 4.1 | 0.005 | 1.28 | 0.0 | 0.07 | 15.42 | 0.01 | 2.296 | 4.84 | 0.27 | 9.5 | 90.5 | 0.0 | -3.82 | 0.86 | 0.76 | -0.02 | 4.1 | 0.003 | 0.73 | 0.0 | 0.04 | 15.84 | 0.00 | 2.113 | 23.33 | 3.43 | 8.8 | 91.2 | 0.0 | -2.32 | 1.03 | 0.87 | 0.79 | -0.33 | 6600 | 830 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EFP | 28087 | 2024-03-10 | 2022-09-08 | 3.8 | 4.73 | 3.90 | 4.0 | 0.006 | 1.46 | 7.0 | 0.09 | 18.61 | 0.01 | 1.908 | 33.65 | 3.07 | 13.3 | 86.7 | 0.0 | -4.26 | 0.82 | 0.62 | -0.42 | 4.0 | 0.004 | 0.89 | 0.0 | 0.04 | 18.96 | 0.00 | 2.081 | 25.08 | 4.02 | 11.8 | 88.2 | 0.0 | -2.48 | 0.89 | 0.84 | 0.73 | -0.30 | 4705 | 594 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7R4R | 14315 | 2024-03-25 | 2022-02-09 | 3.9 | 4.20 | — | 6.8 | 0.036 | 4.11 | 135.0 | 0.31 | 18.82 | 0.03 | 1.228 | 59.98 | 7.44 | 8.5 | 91.3 | 0.2 | -3.20 | 0.62 | 0.41 | -0.13 | 5.7 | 0.006 | 1.43 | 18.0 | 0.24 | 16.22 | 0.00 | 1.707 | 35.48 | 6.54 | 9.7 | 90.2 | 0.1 | -2.52 | 1.26 | 0.68 | 0.60 | -0.26 | 50505 | 3293 | 12 | 0 | 43 | 0 | 24171 | logfile |
✔ | 8T23 | 40979 | 2024-03-11 | 2023-06-05 | 3.87 | 4.12 | 4.24 | 7.5 | 0.005 | 1.00 | 0.0 | 0.05 | 19.22 | 0.01 | 2.136 | 16.85 | 0.59 | 11.9 | 88.1 | 0.0 | -3.06 | 0.59 | 0.48 | 0.19 | 7.3 | 0.003 | 0.82 | 0.0 | 0.05 | 18.12 | 0.01 | 2.123 | 17.32 | 3.81 | 11.5 | 88.5 | 0.0 | -2.57 | 1.42 | 0.62 | 0.55 | -0.26 | 6451 | 781 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 5L3P | 4001 | 2024-03-26 | 2016-05-24 | 3.7 | 4.66 | — | 16.0 | 0.006 | 0.60 | 0.0 | 0.19 | 22.20 | 0.02 | 2.115 | 7.18 | 0.00 | 8.2 | 89.4 | 2.4 | -1.95 | 0.44 | 0.11 | 0.16 | 3.9 | 0.005 | 0.99 | 2.0 | 0.04 | 24.17 | 0.01 | 1.748 | 42.81 | 1.76 | 10.4 | 89.0 | 0.6 | -2.39 | 2.18 | 0.66 | 0.42 | -0.25 | 149606 | 6419 | 58 | 4704 | 76 | 0 | 0 | logfile |
✔ | 7LC9 | 23270 | 2024-03-10 | 2021-01-10 | 3.2 | 3.25 | — | 3.1 | 0.004 | 0.72 | 0.0 | 0.05 | 17.46 | 0.00 | 1.884 | 31.60 | 18.58 | 13.4 | 86.6 | 0.0 | -4.15 | 0.71 | 0.77 | -0.84 | 3.1 | 0.004 | 0.68 | 0.0 | 0.05 | 17.25 | 0.00 | 2.139 | 28.50 | 10.32 | 11.2 | 88.8 | 0.0 | -3.62 | 0.66 | 0.69 | 0.79 | -0.22 | 3497 | 525 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UiC | 26543 | 2024-03-17 | 2022-03-29 | 3.7 | 6.93 | 3.66 | 3.1 | 0.002 | 0.51 | 0.0 | 0.04 | 13.62 | 0.00 | 2.212 | 9.81 | 0.00 | 1.0 | 99.0 | 0.0 | 0.41 | 0.74 | 0.59 | 0.28 | 3.0 | 0.002 | 0.67 | 0.0 | 0.04 | 14.92 | 0.00 | 2.124 | 11.92 | 0.96 | 1.9 | 98.0 | 0.0 | 0.89 | 0.61 | 0.81 | 0.71 | -0.21 | 17303 | 2138 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TTS | 26122 | 2024-03-17 | 2022-02-01 | 2.9 | 12.34 | — | — | 0.008 | 0.99 | 1.0 | 0.08 | 12.97 | 0.01 | 1.788 | 5.64 | 0.30 | 3.2 | 96.6 | 0.1 | 1.89 | 0.77 | 0.55 | -0.20 | — | 0.003 | 0.60 | 0.0 | 0.04 | 13.75 | 0.00 | 1.912 | 17.34 | 0.43 | 3.4 | 96.5 | 0.1 | 2.16 | 0.99 | 0.71 | 0.43 | -0.20 | 18793 | 2686 | 12 | 0 | 23 | 0 | 0 | logfile |
✔ | 7o3Y | 12712 | 2024-03-03 | 2021-04-03 | 3.8 | 5.36 | 4.02 | 6.6 | 0.017 | 1.23 | 0.0 | 0.07 | 17.47 | 0.01 | 1.232 | 13.83 | 1.39 | 2.3 | 97.7 | 0.0 | 2.03 | 0.56 | 0.43 | -1.05 | 6.8 | 0.005 | 1.22 | 0.0 | 0.05 | 19.41 | 0.01 | 2.016 | 33.38 | 2.63 | 1.6 | 98.4 | 0.0 | 1.62 | 2.04 | 0.77 | 0.83 | -0.20 | 158288 | 20576 | 112 | 0 | 16 | 0 | 0 | logfile |
✔ | 6C9K | 7437 | 2024-03-23 | 2018-01-26 | 3.49 | 5.32 | — | 5.0 | 0.016 | 1.08 | 0.0 | 0.07 | 11.33 | 0.01 | 2.388 | 0.77 | 0.00 | 0.6 | 99.4 | 0.0 | 1.74 | 0.55 | 0.28 | 0.81 | 5.0 | 0.002 | 0.57 | 0.0 | 0.04 | 14.77 | 0.00 | 2.147 | 14.48 | 1.69 | 1.3 | 98.7 | 0.0 | 3.59 | 0.88 | 0.81 | 0.65 | -0.19 | 37632 | 4923 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 8B3Q | 15833 | 2024-03-19 | 2022-09-16 | 2.58 | 3.69 | 2.62 | 3.2 | 0.011 | 1.55 | 0.0 | 0.09 | 14.85 | 0.01 | 2.348 | 13.83 | 0.20 | 0.0 | 100.0 | 0.0 | -1.09 | 0.83 | 0.94 | 3.67 | 3.3 | 0.003 | 0.55 | 0.0 | 0.03 | 17.44 | 0.00 | 2.219 | 4.82 | 2.59 | 0.2 | 99.8 | 0.0 | 6.35 | 2.57 | 0.77 | 0.88 | -0.19 | 25095 | 3395 | 75 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YPi | 34001 | 2024-03-23 | 2022-08-03 | 3.8 | 4.97 | 3.95 | 3.9 | 0.007 | 1.26 | 2.0 | 0.07 | 13.34 | 0.01 | 1.737 | 14.24 | 0.13 | 6.9 | 93.1 | 0.0 | -2.94 | 0.80 | 0.59 | -0.05 | 3.9 | 0.005 | 0.85 | 1.0 | 0.05 | 15.19 | 0.01 | 1.539 | 33.67 | 2.59 | 8.1 | 91.9 | 0.0 | -1.63 | 1.31 | 0.82 | 0.64 | -0.17 | 36476 | 4638 | 8 | 0 | 2 | 0 | 0 | logfile |
✔ | 7VZF | 32227 | 2024-03-10 | 2021-11-16 | 2.95 | 2.71 | — | 3.0 | 0.009 | 1.06 | 0.0 | 0.06 | 16.23 | 0.01 | 1.971 | 38.45 | 0.00 | 26.5 | 73.5 | 0.0 | -5.56 | 0.30 | 0.43 | -0.13 | 2.8 | 0.004 | 0.92 | 0.0 | 0.05 | 18.65 | 0.00 | 2.097 | 12.69 | 6.03 | 18.5 | 81.5 | 0.0 | -4.26 | 1.85 | 0.37 | 0.63 | -0.15 | 2628 | 363 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8W4P | 37268 | 2024-03-10 | 2023-08-24 | 3.48 | 4.23 | 3.79 | 3.6 | 0.017 | 2.89 | 0.0 | 0.17 | 23.39 | 0.01 | 2.306 | 9.89 | 0.00 | 15.3 | 83.9 | 0.8 | -3.29 | 0.42 | 0.75 | 1.40 | 3.6 | 0.006 | 1.16 | 0.0 | 0.09 | 18.42 | 0.00 | 2.192 | 10.82 | 4.80 | 13.7 | 86.1 | 0.3 | -0.47 | 1.23 | 0.43 | 0.79 | -0.13 | 4531 | 377 | 6 | 0 | 191 | 0 | 0 | logfile |
✔ | 6CXC | 7774 | 2024-03-16 | 2018-04-02 | 3.9 | 4.14 | — | 4.0 | 0.006 | 1.03 | 0.0 | 0.06 | 11.60 | 0.01 | 2.198 | 9.05 | 0.29 | 6.2 | 93.8 | 0.0 | -4.06 | 0.71 | 0.71 | 0.12 | 4.0 | 0.004 | 0.81 | 0.0 | 0.05 | 15.93 | 0.00 | 2.076 | 23.13 | 3.74 | 7.2 | 92.8 | 0.0 | -2.20 | 2.13 | 0.72 | 0.75 | -0.11 | 15196 | 1945 | 18 | 0 | 6 | 0 | 0 | logfile |
✔ | 8E55 | 27903 | 2024-03-15 | 2022-08-19 | 3.85 | 4.07 | 3.34 | 4.0 | 0.007 | 0.67 | 0.0 | 0.03 | 12.36 | 0.00 | 2.252 | 3.39 | 0.50 | 2.5 | 97.5 | 0.0 | 1.17 | 0.66 | 0.60 | -0.11 | 4.0 | 0.003 | 0.57 | 0.0 | 0.03 | 16.27 | 0.00 | 2.251 | 11.21 | 1.85 | 1.6 | 98.4 | 0.0 | 4.07 | 1.44 | 0.69 | 0.71 | -0.11 | 12176 | 780 | 4 | 0 | 0 | 0 | 6104 | logfile |