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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6FU8 | 4319 | 2023-02-16 | 2018-02-26 | 3.2 | 4.43 | 2.98 | 3.8 | 0.013 | 2.11 | 2.0 | 0.10 | 20.18 | 0.02 | 2.617 | 1.47 | 2.78 | 11.2 | 86.2 | 2.5 | -3.87 | 0.17 | 0.42 | 2.23 | 4.1 | 0.004 | 0.85 | 0.0 | 0.04 | 15.02 | 0.00 | 2.243 | 16.86 | 0.00 | 11.2 | 87.5 | 1.2 | -1.85 | 3.09 | 0.23 | 0.62 | -0.89 | 1364 | 82 | 1 | 0 | 0 | 0 | 711 | logfile |
✔ | 7ZPK | 14856 | 2023-02-25 | 2022-04-27 | 3.81 | 7.29 | 3.88 | 5.6 | 0.004 | 0.81 | 0.0 | 0.05 | 13.25 | 0.02 | 2.214 | 2.12 | 0.68 | 2.8 | 97.2 | 0.0 | 0.04 | 0.81 | 0.55 | -0.44 | 4.1 | 0.004 | 0.67 | 0.0 | 0.04 | 15.75 | 0.01 | 1.886 | 22.41 | 0.38 | 4.9 | 95.1 | 0.0 | 0.42 | 2.37 | 0.86 | 0.73 | -0.53 | 25935 | 1513 | 3 | 55 | 0 | 0 | 12760 | logfile |
✔ | 7N8N | 24238 | 2023-02-20 | 2021-06-15 | 3.89 | 5.26 | — | 4.4 | 0.006 | 0.85 | 0.0 | 0.04 | 28.11 | 0.01 | 2.035 | 27.61 | 0.00 | 9.6 | 90.4 | 0.0 | -1.71 | 0.87 | 0.78 | -0.56 | 4.4 | 0.005 | 0.74 | 0.0 | 0.04 | 28.70 | 0.01 | 2.032 | 25.58 | 0.31 | 6.5 | 93.3 | 0.3 | -0.47 | 1.28 | 0.87 | 0.80 | -0.27 | 11121 | 798 | 6 | 250 | 0 | 0 | 0 | logfile |
✔ | 7TTS | 26122 | 2023-02-22 | 2022-02-01 | 2.9 | 12.34 | — | — | 0.008 | 0.99 | 1.0 | 0.08 | 12.67 | 0.01 | 1.788 | 5.64 | 0.30 | 3.2 | 96.6 | 0.1 | 1.89 | 0.77 | 0.55 | -0.20 | — | 0.003 | 0.60 | 0.0 | 0.04 | 13.61 | 0.00 | 1.831 | 19.04 | 0.24 | 3.7 | 96.2 | 0.1 | 1.97 | 1.03 | 0.84 | 0.81 | -0.20 | 18793 | 2686 | 12 | 0 | 23 | 0 | 0 | logfile |
✔ | 6QYM | 4679 | 2023-02-25 | 2019-03-09 | 3.6 | 3.25 | — | 4.0 | 0.007 | 0.89 | 0.0 | 0.05 | 9.66 | 0.01 | 2.201 | 8.77 | 0.00 | 6.5 | 93.5 | 0.0 | -4.63 | 0.62 | 0.60 | 0.02 | 3.5 | 0.005 | 0.95 | 0.0 | 0.05 | 17.36 | 0.00 | 2.072 | 29.86 | 1.38 | 5.4 | 94.6 | 0.0 | -0.66 | 2.36 | 0.69 | 0.67 | -0.16 | 26880 | 3360 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8E55 | 27903 | 2023-02-20 | 2022-08-19 | 3.85 | 4.07 | 3.34 | 4.0 | 0.007 | 0.67 | 0.0 | 0.03 | 12.36 | 0.00 | 2.252 | 3.39 | 0.50 | 2.5 | 97.5 | 0.0 | 1.17 | 0.66 | 0.60 | -0.11 | 4.0 | 0.003 | 0.55 | 0.0 | 0.03 | 16.13 | 0.00 | 2.262 | 10.49 | 0.00 | 1.8 | 98.2 | 0.0 | 4.40 | 1.43 | 0.69 | 0.70 | -0.11 | 12176 | 780 | 4 | 0 | 0 | 0 | 6104 | logfile |
✔ | 6A7F | 6993 | 2023-02-19 | 2018-07-03 | 3.4 | 3.51 | — | 3.4 | 0.014 | 1.17 | 0.0 | 0.06 | 11.20 | 0.01 | 2.271 | 4.26 | 0.00 | 0.0 | 100.0 | 0.0 | -2.13 | 0.55 | 0.84 | 0.56 | 3.4 | 0.004 | 0.71 | 0.0 | 0.04 | 17.78 | 0.00 | 2.148 | 14.92 | 0.41 | 0.7 | 99.3 | 0.0 | 1.97 | 2.06 | 0.60 | 0.86 | -0.08 | 10830 | 1410 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RTV | 24690 | 2023-02-17 | 2021-08-15 | 3.96 | 4.06 | — | 4.1 | 0.003 | 0.68 | 0.0 | 0.04 | 16.49 | 0.00 | 2.207 | 14.04 | 0.32 | 2.8 | 97.2 | 0.0 | 3.61 | 0.41 | 0.63 | 0.10 | 4.1 | 0.004 | 0.88 | 0.0 | 0.04 | 18.40 | 0.00 | 2.174 | 15.94 | 0.97 | 3.0 | 97.0 | 0.0 | 2.97 | 1.77 | 0.41 | 0.64 | -0.08 | 2881 | 366 | 3 | 0 | 6 | 0 | 0 | logfile |
✔ | 7PQG | 13593 | 2023-02-17 | 2021-09-21 | 3.7 | 4.20 | — | 4.0 | 0.004 | 0.88 | 0.0 | 0.05 | 12.56 | 0.01 | 2.204 | 28.21 | 0.28 | 7.4 | 92.6 | 0.0 | -0.87 | 0.56 | 0.76 | 0.82 | 4.1 | 0.004 | 1.16 | 0.0 | 0.06 | 15.40 | 0.01 | 2.147 | 34.40 | 1.12 | 7.9 | 92.1 | 0.0 | -1.28 | 0.74 | 0.56 | 0.77 | -0.07 | 3251 | 423 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CXC | 7774 | 2023-02-21 | 2018-04-02 | 3.9 | 4.14 | — | 4.0 | 0.006 | 1.02 | 0.0 | 0.06 | 10.95 | 0.01 | 2.198 | 9.05 | 0.29 | 6.2 | 93.8 | 0.0 | -4.06 | 0.71 | 0.71 | 0.12 | 4.0 | 0.003 | 0.80 | 0.0 | 0.05 | 16.00 | 0.00 | 2.124 | 20.73 | 0.34 | 5.3 | 94.7 | 0.0 | -2.08 | 2.14 | 0.73 | 0.76 | -0.05 | 15196 | 1945 | 18 | 0 | 6 | 0 | 0 | logfile |
✔ | 6M71 | 11007 | 2023-02-18 | 2020-03-16 | 2.9 | 3.22 | 3.22 | 51.0 | 0.003 | 0.59 | 0.0 | 0.04 | 13.42 | 0.00 | 1.966 | 8.99 | 0.00 | 4.2 | 95.8 | 0.0 | -3.06 | 0.04 | 0.02 | 0.33 | 3.1 | 0.004 | 0.73 | 0.0 | 0.04 | 15.84 | 0.00 | 2.163 | 13.70 | 3.17 | 5.0 | 95.0 | 0.0 | -0.20 | 1.62 | 0.06 | 0.05 | -0.05 | 8614 | 1085 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UZZ | 33318 | 2023-02-21 | 2019-11-16 | 3.1 | 3.28 | 3.51 | 36.0 | 0.009 | 0.92 | 0.0 | 0.06 | 10.61 | 0.01 | 2.325 | 2.53 | 0.24 | 1.8 | 98.0 | 0.2 | -4.22 | 0.02 | 0.00 | 0.27 | 3.1 | 0.003 | 0.66 | 0.0 | 0.04 | 14.00 | 0.00 | 2.048 | 10.48 | 0.12 | 3.1 | 96.9 | 0.0 | 1.34 | 2.50 | 0.07 | 0.13 | -0.03 | 15832 | 1984 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 7VZF | 32227 | 2023-02-16 | 2021-11-16 | 2.95 | 2.71 | — | 3.0 | 0.009 | 1.06 | 0.0 | 0.06 | 16.23 | 0.01 | 1.971 | 38.45 | 0.00 | 26.5 | 73.5 | 0.0 | -5.56 | 0.30 | 0.43 | -0.13 | 2.8 | 0.005 | 0.93 | 0.0 | 0.05 | 18.70 | 0.00 | 2.192 | 14.23 | 5.32 | 20.2 | 79.8 | 0.0 | -4.30 | 1.92 | 0.37 | 0.63 | -0.01 | 2628 | 363 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YG1 | 33804 | 2023-02-17 | 2022-07-09 | 3.77 | 4.01 | 3.78 | 3.9 | 0.005 | 1.15 | 1.0 | 0.06 | 14.00 | 0.01 | 2.230 | 42.79 | 1.33 | 14.0 | 86.0 | 0.0 | -3.77 | 0.65 | 0.65 | 0.57 | 3.9 | 0.004 | 0.93 | 0.0 | 0.05 | 16.74 | 0.00 | 2.054 | 28.13 | 0.74 | 9.6 | 90.3 | 0.1 | -2.02 | 1.47 | 0.68 | 0.69 | 0.01 | 6208 | 770 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CAJ | 23209 | 2023-02-25 | 2018-01-31 | 2.8 | 3.42 | — | 70.0 | 0.008 | 0.88 | 0.0 | 0.17 | 9.84 | 0.01 | 1.467 | 5.88 | 0.24 | 4.5 | 95.5 | 0.0 | -3.63 | 0.12 | 0.02 | -0.04 | 2.9 | 0.003 | 0.73 | 0.0 | 0.04 | 14.60 | 0.01 | 2.063 | 15.80 | 3.90 | 5.9 | 94.1 | 0.0 | -1.06 | 1.40 | 0.15 | 0.14 | 0.02 | 24295 | 3210 | 11 | 0 | 1 | 0 | 0 | logfile |
✔ | 6PMJ | 20395 | 2023-02-22 | 2019-07-02 | 3.91 | 5.34 | — | 4.4 | 0.011 | 1.21 | 0.0 | 0.06 | 15.82 | 0.01 | 2.011 | 11.04 | 0.31 | 10.4 | 89.3 | 0.3 | -4.41 | 0.67 | 0.43 | 0.20 | 4.4 | 0.003 | 0.71 | 0.0 | 0.04 | 17.51 | 0.00 | 1.817 | 21.36 | 0.34 | 8.4 | 91.4 | 0.1 | -2.26 | 1.66 | 0.89 | 0.77 | 0.03 | 57984 | 3453 | 10 | 110 | 4 | 0 | 28609 | logfile |
✔ | 5VA2 | 8651 | 2023-02-22 | 2017-03-24 | 3.8 | 5.28 | — | 4.3 | 0.008 | 1.08 | 0.0 | 0.06 | 12.47 | 0.00 | 1.607 | 11.18 | 1.08 | 7.7 | 90.7 | 1.6 | -3.86 | 0.64 | 0.74 | -0.32 | 4.3 | 0.004 | 0.98 | 0.0 | 0.05 | 16.04 | 0.00 | 2.082 | 26.45 | 0.70 | 5.3 | 94.3 | 0.4 | -1.34 | 2.67 | 0.67 | 0.83 | 0.03 | 17576 | 2232 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SC1 | 26879 | 2023-02-27 | 2021-09-26 | 3.2 | 3.82 | 3.39 | 20.0 | 0.006 | 0.60 | 0.0 | 0.05 | 14.85 | 0.00 | 2.169 | 10.07 | 0.06 | 4.0 | 96.0 | 0.0 | -0.55 | 0.14 | 0.01 | -0.05 | 3.3 | 0.003 | 0.66 | 0.0 | 0.05 | 16.70 | 0.00 | 2.082 | 13.14 | 0.37 | 3.8 | 96.2 | 0.0 | -0.67 | 0.87 | 0.20 | 0.14 | 0.03 | 29415 | 3705 | 12 | 0 | 45 | 0 | 0 | logfile |
✔ | 7oCK | 12809 | 2023-02-26 | 2021-04-27 | 3.6 | 5.02 | — | 8.3 | 0.008 | 0.86 | 0.0 | 0.05 | 14.98 | 0.01 | 1.988 | 36.10 | 0.20 | 7.7 | 92.1 | 0.2 | -2.93 | 0.80 | 0.41 | -0.16 | 5.6 | 0.005 | 0.92 | 0.0 | 0.05 | 16.96 | 0.01 | 2.008 | 39.34 | 0.37 | 7.5 | 92.4 | 0.1 | -1.36 | 1.42 | 0.87 | 0.65 | 0.03 | 28276 | 3666 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MF3 | 23810 | 2023-02-24 | 2021-04-08 | 3.4 | 4.14 | — | 3.2 | 0.003 | 0.68 | 0.0 | 0.04 | 15.41 | 0.00 | 1.985 | 17.34 | 0.04 | 6.5 | 93.5 | 0.0 | -0.34 | 0.90 | 0.73 | 0.19 | 3.1 | 0.003 | 0.72 | 0.0 | 0.04 | 17.39 | 0.00 | 1.957 | 17.25 | 0.24 | 7.0 | 93.0 | 0.0 | -0.87 | 1.45 | 0.91 | 0.74 | 0.04 | 22938 | 2822 | 12 | 0 | 8 | 0 | 0 | logfile |