Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PUW	20483	2023-02-20	2019-07-18	2.9	3.21	2.93	3.1	0.013	0.77	0.0	0.04	19.85	0.00	0.000	7.69	0.20	2.1	97.9	0.0	-2.24	0.74	0.90	4.70	3.1	0.003	0.56	0.0	0.04	21.73	0.00	0.000	9.02	2.15	3.4	96.6	0.0	0.49	0.38	0.69	0.90	4.23	11116	1170	28	72	10	312	0	logfile
✔	6PUT	20481	2023-02-19	2019-07-18	2.9	3.22	2.96	3.2	0.007	0.82	0.0	0.05	19.07	0.01	0.000	5.13	0.20	2.5	97.5	0.0	-3.43	0.73	0.90	4.56	3.2	0.006	0.59	0.0	0.05	20.77	0.00	0.000	8.24	1.11	1.9	98.1	0.0	0.58	0.88	0.63	0.88	4.31	10976	1170	28	68	8	308	0	logfile
✔	6NJo	9390	2023-02-23	2019-01-03	3.34	3.42	—	3.4	0.010	1.20	1.0	0.07	11.62	0.01	1.361	5.89	0.49	7.1	92.9	0.0	-4.27	0.80	0.83	3.46	3.4	0.006	0.80	0.0	0.05	14.93	0.00	0.071	10.22	0.54	6.4	93.6	0.0	-1.44	0.52	0.83	0.85	2.54	19090	2466	14	0	12	20	0	logfile
✔	6M1D	30041	2023-02-24	2020-02-25	4.5	6.53	—	4.6	0.005	1.20	0.0	0.06	18.16	0.01	2.043	20.63	9.51	9.3	89.8	0.9	-5.09	0.69	0.76	—	4.6	0.005	1.04	0.0	0.05	14.90	0.01	0.441	31.91	0.00	11.3	88.3	0.4	-4.03	0.67	0.68	0.70	—	21776	2706	4	0	0	0	0	logfile
✔	6NJP	9391	2023-02-23	2019-01-03	3.29	3.37	—	3.3	0.009	1.17	0.0	0.07	11.57	0.01	1.276	6.11	0.67	6.4	93.6	0.0	-4.04	0.81	0.83	3.41	3.3	0.003	0.67	0.0	0.04	14.63	0.00	0.782	8.81	0.33	4.0	96.0	0.0	-0.93	1.16	0.82	0.85	2.58	19607	2530	15	0	12	21	0	logfile
✔	6ZP5	11336	2023-02-24	2020-07-08	3.1	3.90	3.32	3.6	0.012	0.83	0.0	0.15	13.52	0.01	0.012	14.22	0.52	3.0	97.0	0.0	-0.93	0.67	0.64	2.54	3.6	0.003	0.73	0.0	0.11	15.06	0.00	0.789	9.67	0.28	3.5	96.5	0.0	0.24	0.67	0.82	0.84	2.09	23615	2861	33	0	92	0	0	logfile
✔	6ZP7	11337	2023-02-24	2020-07-08	3.3	4.01	3.43	3.7	0.012	0.83	0.0	0.16	13.52	0.01	0.008	16.12	0.52	3.0	97.0	0.0	-0.92	0.64	0.59	1.49	3.7	0.004	0.76	0.0	0.11	15.26	0.00	0.792	11.28	0.36	4.2	95.8	0.0	0.03	1.34	0.82	0.84	2.13	23615	2861	33	0	92	0	0	logfile
✔	7BSV	30168	2023-02-19	2020-03-31	3.0	3.16	—	3.1	0.005	1.15	0.0	0.05	17.62	0.01	1.809	30.62	6.19	7.6	92.2	0.2	-6.02	0.61	0.86	4.20	3.1	0.003	0.89	0.0	0.04	17.95	0.00	0.841	9.58	3.15	5.9	94.1	0.0	-1.17	1.00	0.63	0.88	3.63	9339	1139	6	0	8	4	0	logfile
✔	7NYX	12657	2023-02-27	2021-03-23	4.6	7.95	4.57	3.3	0.003	0.61	0.0	0.04	17.28	0.00	1.844	11.21	0.00	3.4	96.6	0.0	1.74	0.88	0.79	—	3.2	0.004	0.59	0.0	0.04	17.03	0.00	0.850	17.45	0.00	5.3	94.7	0.0	0.67	0.56	0.90	0.83	—	70784	4186	18	104	6	0	34688	logfile
✔	6AP1	8887	2023-02-22	2017-08-16	3.2	3.26	—	3.3	0.016	1.66	2.0	0.09	14.24	0.01	1.198	24.32	3.62	10.9	87.0	2.1	-4.53	0.62	0.58	1.49	3.2	0.003	0.70	0.0	0.04	16.52	0.00	0.868	9.81	0.10	5.6	94.1	0.3	0.79	2.40	0.67	0.64	1.36	18838	2404	24	0	14	0	0	logfile
✔	6oo2	20142	2023-02-22	2019-04-22	4.4	4.52	—	3.5	0.007	1.14	1.0	0.07	13.96	0.01	2.037	7.03	0.00	7.1	92.3	0.6	-3.55	0.75	0.61	—	2.4	0.003	0.70	0.0	0.04	13.05	0.00	0.883	14.96	0.07	4.7	95.3	0.0	1.49	1.05	0.86	0.80	—	16691	2436	24	0	19	0	0	logfile
✔	6NDY	0443	2023-02-20	2018-12-14	3.6	3.70	—	3.6	0.005	0.89	0.0	0.05	14.71	0.01	2.037	4.67	0.00	5.9	94.1	0.0	-3.78	0.66	0.54	0.23	3.6	0.003	0.72	0.0	0.04	16.31	0.00	0.894	11.65	0.52	5.9	94.1	0.0	-0.22	1.30	0.79	0.80	0.84	12531	1596	11	0	20	0	0	logfile
✔	7NVX	12616	2023-02-24	2021-03-16	3.9	3.92	3.77	3.8	0.003	0.49	0.0	0.04	15.65	0.00	1.971	6.61	0.00	4.5	95.5	0.0	0.85	0.70	0.64	1.31	3.8	0.004	0.72	0.0	0.04	18.10	0.00	0.904	15.82	0.32	5.1	94.8	0.0	-0.66	0.93	0.72	0.67	1.17	23663	2796	18	50	35	0	0	logfile
✔	7PT7	13620	2023-02-26	2021-09-26	3.8	3.34	—	3.4	0.007	0.74	4.0	0.05	14.97	0.00	1.865	11.56	0.64	3.3	96.7	0.0	0.56	0.76	0.80	1.56	3.4	0.003	0.57	0.0	0.04	15.85	0.00	0.924	10.95	0.25	3.0	97.0	0.0	0.73	0.31	0.77	0.82	1.43	67420	8451	29	0	50	0	0	logfile
✔	7T76	25735	2023-02-22	2021-12-14	4.43	4.68	4.39	4.5	0.021	1.95	2.0	0.14	10.42	0.02	0.530	1.29	0.77	3.4	96.4	0.3	0.31	0.81	0.80	—	4.5	0.003	0.68	0.0	0.05	12.25	0.00	0.951	12.48	0.00	5.0	94.9	0.1	-0.57	1.89	0.81	0.81	—	16587	1934	42	0	104	0	0	logfile
✔	7Qo1	14080	2023-02-21	2021-12-23	4.4	3.65	4.44	3.5	0.012	1.85	2.0	0.09	18.30	0.02	2.337	2.24	1.51	5.3	94.6	0.2	-1.82	0.79	0.60	—	3.5	0.003	0.75	0.0	0.04	17.66	0.00	0.966	16.68	0.00	5.3	94.7	0.0	-1.30	0.73	0.80	0.60	—	14179	1694	9	62	1	0	0	logfile
✔	5LMo	4074	2023-02-21	2016-08-01	4.3	4.71	4.30	4.3	0.009	1.47	50.0	0.12	20.86	0.01	0.865	18.49	20.40	10.6	85.8	3.6	-2.76	0.80	0.69	—	4.3	0.005	0.76	0.0	0.04	16.78	0.01	0.968	35.61	0.00	9.3	90.2	0.5	-1.75	2.17	0.87	0.84	—	54110	2622	29	1533	110	0	0	logfile
✔	8H77	34519	2023-02-21	2022-10-19	3.2	2.74	3.17	3.1	0.005	0.84	0.0	0.05	15.36	0.00	1.365	13.57	0.12	5.1	94.9	0.0	-1.57	0.59	0.67	2.51	3.1	0.004	0.66	0.0	0.04	17.53	0.00	0.978	10.13	0.29	4.2	95.8	0.0	-0.93	0.69	0.69	0.77	2.13	15726	1930	8	0	4	0	0	logfile
✔	7UiM	26549	2023-02-21	2022-03-29	3.1	4.12	3.81	3.6	0.005	0.87	0.0	0.04	18.46	0.01	1.903	9.02	0.00	3.7	96.3	0.0	-1.28	0.67	0.47	0.98	3.6	0.006	0.82	0.0	0.04	19.55	0.01	0.997	36.04	1.47	6.3	93.4	0.3	-0.97	2.81	0.79	0.76	0.73	14772	387	3	541	15	0	0	logfile
✔	6TZ1	20586	2023-02-21	2019-08-09	3.4	3.44	—	3.4	0.008	0.92	0.0	0.05	10.16	0.01	2.207	4.35	0.47	5.1	94.9	0.0	-3.92	0.54	0.85	3.95	3.4	0.003	0.59	0.0	0.04	14.53	0.00	1.013	6.52	0.47	3.8	96.2	0.0	-0.27	1.25	0.53	0.87	3.17	14212	1709	5	23	1	0	0	logfile

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