Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PUT	20481	2023-08-12	2019-07-18	2.9	3.22	2.96	3.2	0.007	0.82	0.0	0.05	19.07	0.01	0.000	5.13	0.20	2.5	97.5	0.0	-3.43	0.73	0.90	4.56	3.2	0.006	0.59	0.0	0.05	20.77	0.00	0.000	8.24	1.11	1.9	98.1	0.0	0.58	0.88	0.63	0.88	4.31	10976	1170	28	68	8	308	0	logfile
✔	6PUZ	20485	2023-08-12	2019-07-18	2.8	3.10	2.87	3.1	0.008	0.86	0.0	0.05	19.70	0.01	0.000	5.85	0.19	2.2	97.8	0.0	-2.67	0.74	0.89	4.50	3.0	0.003	0.50	0.0	0.04	21.39	0.00	0.000	8.06	0.68	2.1	97.9	0.0	0.67	0.40	0.70	0.90	4.06	11702	1230	28	72	10	340	0	logfile
✔	6SHT	10205	2023-08-23	2019-08-08	2.73	2.88	2.75	2.8	0.015	1.55	0.0	0.07	19.28	0.01	0.000	7.75	5.56	0.6	98.8	0.6	-2.82	0.81	0.91	3.74	2.8	0.002	0.53	0.0	0.04	19.52	0.00	0.000	5.30	1.95	1.7	97.9	0.4	5.47	1.48	0.71	0.84	1.97	37152	4176	24	0	48	1728	0	logfile
✔	6PUW	20483	2023-08-12	2019-07-18	2.9	3.21	2.93	3.1	0.013	0.77	0.0	0.04	19.85	0.00	0.000	7.69	0.20	2.1	97.9	0.0	-2.24	0.74	0.90	4.70	3.1	0.003	0.56	0.0	0.04	21.73	0.00	0.000	9.02	2.15	3.4	96.6	0.0	0.49	0.38	0.69	0.90	4.23	11116	1170	28	72	10	312	0	logfile
✔	6NJo	9390	2023-08-15	2019-01-03	3.34	3.42	—	3.4	0.010	1.20	1.0	0.07	11.62	0.01	1.361	5.89	0.49	7.1	92.9	0.0	-4.27	0.80	0.83	3.46	3.4	0.006	0.80	0.0	0.05	14.93	0.00	0.071	10.22	0.54	6.4	93.6	0.0	-1.44	0.52	0.83	0.85	2.54	19090	2466	14	0	12	20	0	logfile
✔	7Y36	33590	2023-08-11	2022-06-10	2.8	3.76	2.72	3.7	0.007	0.73	0.0	0.05	12.89	0.00	2.152	7.06	0.00	4.2	95.8	0.0	-1.26	0.57	0.54	0.34	3.6	0.003	0.75	0.0	0.04	16.83	0.00	0.249	10.79	3.23	3.9	96.1	0.0	0.37	1.49	0.63	0.77	2.04	9206	1151	7	0	1	0	0	logfile
✔	7URT	26718	2023-08-09	2022-04-22	2.39	2.51	2.52	2.5	0.008	0.96	0.0	0.07	14.02	0.01	0.512	6.62	1.60	0.9	99.1	0.0	1.22	0.71	0.82	4.21	2.5	0.036	3.37	11.0	0.30	17.01	0.01	0.291	9.27	1.09	1.7	98.2	0.1	1.92	1.13	0.69	0.81	2.58	107880	13260	60	0	120	0	0	logfile
✔	8EET	28057	2023-08-09	2022-09-07	3.1	3.36	3.21	3.4	0.007	0.92	0.0	0.06	12.28	0.00	0.312	9.93	1.07	0.5	99.5	0.0	1.87	0.72	0.82	3.55	3.4	0.037	2.69	0.0	0.32	14.46	0.00	0.378	13.19	0.11	1.1	98.9	0.0	2.07	1.31	0.68	0.83	2.96	107640	13260	60	0	120	0	0	logfile
✔	6M1D	30041	2023-08-16	2020-02-25	4.5	6.53	—	4.6	0.005	1.20	0.0	0.06	18.16	0.01	2.043	20.67	9.51	9.3	89.8	0.9	-5.09	0.69	0.76	—	4.6	0.005	1.04	0.0	0.05	14.90	0.01	0.441	31.95	0.00	11.3	88.3	0.4	-4.03	0.67	0.68	0.70	—	21776	2706	4	0	0	0	0	logfile
✔	8A1W	15091	2023-08-21	2022-06-02	2.56	2.20	2.53	2.4	0.004	0.56	0.0	0.04	15.09	0.00	2.014	2.96	0.32	1.1	98.9	0.0	1.65	0.60	0.72	3.88	2.4	0.004	0.58	0.0	0.04	16.95	0.00	0.766	8.09	1.86	3.0	97.0	0.0	0.24	1.46	0.63	0.82	3.75	30172	1908	16	0	16	289	14776	logfile
✔	6ZP5	11336	2023-08-17	2020-07-08	3.1	3.90	3.32	3.6	0.013	0.92	0.0	0.15	13.62	0.01	0.012	14.22	0.52	3.0	97.0	0.0	-0.93	0.67	0.64	2.54	3.6	0.003	0.81	0.0	0.11	15.16	0.00	0.778	9.09	0.16	3.4	96.6	0.0	0.29	0.66	0.82	0.84	2.09	23615	2861	33	0	92	0	0	logfile
✔	6NJP	9391	2023-08-16	2019-01-03	3.29	3.37	—	3.3	0.009	1.17	0.0	0.07	11.57	0.01	1.276	6.11	0.67	6.4	93.6	0.0	-4.04	0.81	0.83	3.41	3.3	0.003	0.67	0.0	0.04	14.63	0.00	0.782	8.81	0.33	4.0	96.0	0.0	-0.93	1.16	0.82	0.85	2.58	19607	2530	15	0	12	21	0	logfile
✔	7UMZ	26610	2023-08-11	2022-04-08	3.09	3.37	3.21	3.3	0.004	0.87	0.0	0.04	17.35	0.01	2.198	7.00	2.38	6.1	93.3	0.6	-1.01	0.68	0.70	1.58	3.3	0.060	2.98	178.0	0.19	19.49	0.02	0.810	51.66	2.96	27.0	70.3	2.8	-6.90	1.64	0.75	0.86	2.31	111437	12516	12	0	3221	8	0	logfile
✔	8A1X	15092	2023-08-20	2022-06-02	3.2	3.01	3.27	3.3	0.004	0.59	0.0	0.04	15.84	0.00	1.889	5.80	0.06	2.0	98.0	0.0	1.53	0.56	0.70	2.31	3.3	0.003	0.51	0.0	0.04	16.13	0.00	0.839	7.98	0.06	2.6	97.4	0.0	1.08	0.40	0.61	0.80	2.33	29510	1893	11	0	11	0	14655	logfile
✔	7NYX	12657	2023-08-17	2021-03-23	4.6	7.95	4.57	3.3	0.003	0.61	0.0	0.04	17.28	0.00	1.844	11.21	0.00	3.4	96.6	0.0	1.74	0.88	0.79	—	3.2	0.004	0.59	0.0	0.04	17.03	0.00	0.850	17.45	0.00	5.3	94.7	0.0	0.67	0.56	0.90	0.83	—	70784	4186	18	104	6	0	34688	logfile
✔	7BSV	30168	2023-08-11	2020-03-31	3.0	3.16	—	3.1	0.005	1.15	0.0	0.05	17.26	0.01	1.809	30.62	6.19	7.6	92.2	0.2	-6.02	0.61	0.86	4.20	3.1	0.005	0.93	0.0	0.05	18.07	0.00	0.854	9.10	3.44	6.1	93.8	0.1	-1.37	0.99	0.62	0.88	3.82	9339	1139	6	0	8	4	0	logfile
✔	6AP1	8887	2023-08-15	2017-08-16	3.2	3.26	—	3.3	0.016	1.66	2.0	0.09	14.24	0.01	1.198	24.32	3.62	10.9	87.0	2.1	-4.53	0.62	0.58	1.49	3.2	0.003	0.70	0.0	0.04	16.52	0.00	0.868	9.81	0.10	5.6	94.1	0.3	0.79	2.40	0.67	0.64	1.36	18838	2404	24	0	14	0	0	logfile
✔	8A1Y	15093	2023-08-21	2022-06-02	3.3	3.70	3.51	3.7	0.004	0.54	0.0	0.04	15.64	0.00	2.049	3.87	0.06	2.0	98.0	0.0	1.28	0.59	0.75	1.56	3.7	0.003	0.51	0.0	0.04	16.37	0.00	0.872	7.34	0.06	3.1	96.9	0.0	0.58	1.46	0.63	0.80	1.49	30045	1920	11	0	14	0	14864	logfile
✔	6oo2	20142	2023-08-14	2019-04-22	4.4	4.52	—	3.5	0.007	1.14	1.0	0.07	13.96	0.01	2.037	7.03	0.00	7.1	92.3	0.6	-3.55	0.75	0.61	—	2.4	0.003	0.70	0.0	0.04	13.05	0.00	0.883	14.96	0.07	4.7	95.3	0.0	1.49	1.05	0.86	0.80	—	16691	2436	24	0	19	0	0	logfile
✔	7TDH	25829	2023-08-13	2021-12-31	4.0	4.95	4.67	4.5	0.003	0.77	0.0	0.04	13.63	0.00	2.254	4.64	0.00	5.1	94.9	0.0	-1.74	0.84	0.67	—	4.5	0.030	2.65	66.0	0.11	19.67	0.02	0.888	153.73	3.43	43.9	54.5	1.5	-7.26	2.44	0.88	0.83	—	117532	13060	8	0	3616	0	0	logfile

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