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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6PUY | 20484 | 2022-04-05 | 2019-07-18 | 2.8 | 3.15 | 2.88 | 3.1 | 0.015 | 0.90 | 0.0 | 0.06 | 19.62 | 0.01 | 0.000 | 4.27 | 0.19 | 3.0 | 97.0 | 0.0 | -3.07 | 0.75 | 0.90 | 4.33 | 3.1 | 0.003 | 0.56 | 0.0 | 0.04 | 21.03 | 0.00 | 0.000 | 8.71 | 1.16 | 2.5 | 97.5 | 0.0 | 0.74 | 3.18 | 0.58 | 0.84 | 3.91 | 11784 | 1232 | 28 | 72 | 10 | 404 | 0 | logfile |
✔ | 6PUT | 20481 | 2022-04-05 | 2019-07-18 | 2.9 | 3.22 | 2.96 | 3.2 | 0.007 | 0.82 | 0.0 | 0.05 | 19.07 | 0.01 | 0.000 | 5.03 | 0.20 | 2.5 | 97.5 | 0.0 | -3.43 | 0.73 | 0.90 | 4.56 | 3.2 | 0.005 | 0.58 | 0.0 | 0.04 | 20.73 | 0.00 | 0.000 | 8.39 | 1.21 | 1.7 | 98.3 | 0.0 | 0.61 | 0.88 | 0.65 | 0.89 | 4.26 | 10976 | 1170 | 28 | 68 | 8 | 308 | 0 | logfile |
✔ | 6SHT | 10205 | 2022-04-08 | 2019-08-08 | 2.73 | 2.88 | 2.78 | 2.8 | 0.015 | 1.55 | 0.0 | 0.07 | 17.80 | 0.01 | 0.000 | 10.21 | 5.56 | 0.6 | 98.8 | 0.6 | -2.82 | 0.81 | 0.91 | 3.74 | 2.8 | 0.004 | 0.57 | 0.0 | 0.04 | 19.60 | 0.00 | 0.000 | 5.44 | 2.24 | 1.4 | 98.3 | 0.3 | 5.07 | 1.76 | 0.72 | 0.84 | 2.18 | 37152 | 4176 | 24 | 0 | 48 | 1728 | 0 | logfile |
✔ | 6PUW | 20483 | 2022-04-05 | 2019-07-18 | 2.9 | 3.21 | 2.93 | 3.1 | 0.013 | 0.77 | 0.0 | 0.04 | 19.88 | 0.00 | 0.000 | 7.60 | 0.20 | 2.1 | 97.9 | 0.0 | -2.24 | 0.74 | 0.90 | 4.70 | 3.1 | 0.005 | 0.58 | 0.0 | 0.04 | 21.70 | 0.00 | 0.000 | 8.17 | 1.23 | 3.2 | 96.8 | 0.0 | 0.37 | 0.36 | 0.68 | 0.90 | 4.32 | 11116 | 1170 | 28 | 72 | 10 | 312 | 0 | logfile |
✔ | 6PUZ | 20485 | 2022-04-05 | 2019-07-18 | 2.8 | 3.10 | 2.87 | 3.1 | 0.008 | 0.87 | 0.0 | 0.05 | 19.45 | 0.01 | 0.000 | 5.85 | 0.19 | 2.2 | 97.8 | 0.0 | -2.67 | 0.74 | 0.89 | 4.50 | 3.0 | 0.003 | 0.49 | 0.0 | 0.04 | 21.32 | 0.00 | 0.000 | 7.65 | 0.87 | 2.2 | 97.8 | 0.0 | 0.66 | 0.39 | 0.69 | 0.89 | 4.11 | 11702 | 1230 | 28 | 72 | 10 | 340 | 0 | logfile |
✔ | 5A9Z | 6396 | 2022-04-13 | 2015-07-23 | 4.7 | 4.83 | — | 4.7 | 0.013 | 1.89 | 26.0 | 0.14 | 23.31 | 0.03 | 0.000 | 199.39 | 29.15 | 25.1 | 49.6 | 25.2 | -7.73 | 0.81 | 0.65 | — | 4.7 | 0.007 | 1.03 | 0.0 | 0.05 | 19.42 | 0.01 | 0.000 | 40.39 | 0.19 | 21.0 | 76.7 | 2.4 | -4.44 | 2.93 | 0.87 | 0.82 | — | 150547 | 6671 | 58 | 4527 | 131 | 0 | 0 | logfile |
✔ | 6NJo | 9390 | 2022-04-06 | 2019-01-03 | 3.34 | 3.42 | — | 3.4 | 0.010 | 1.20 | 1.0 | 0.07 | 11.62 | 0.01 | 1.361 | 5.91 | 0.49 | 7.1 | 92.9 | 0.0 | -4.27 | 0.80 | 0.83 | 3.46 | 3.4 | 0.003 | 0.68 | 0.0 | 0.04 | 14.74 | 0.00 | 0.155 | 8.95 | 0.29 | 4.8 | 95.2 | 0.0 | -0.97 | 0.53 | 0.82 | 0.83 | 2.25 | 19090 | 2466 | 14 | 0 | 12 | 20 | 0 | logfile |
✔ | 6NJP | 9391 | 2022-04-06 | 2019-01-03 | 3.29 | 3.37 | — | 3.3 | 0.009 | 1.17 | 0.0 | 0.07 | 11.57 | 0.01 | 1.276 | 6.16 | 0.67 | 6.4 | 93.6 | 0.0 | -4.04 | 0.81 | 0.83 | 3.41 | 3.3 | 0.003 | 0.70 | 0.0 | 0.05 | 14.73 | 0.00 | 0.613 | 9.39 | 0.48 | 4.8 | 95.2 | 0.0 | -1.19 | 1.15 | 0.83 | 0.85 | 2.70 | 19607 | 2530 | 15 | 0 | 12 | 21 | 0 | logfile |
✔ | 7BSV | 30168 | 2022-04-04 | 2020-03-31 | 3.0 | 3.16 | — | 3.1 | 0.005 | 1.15 | 0.0 | 0.05 | 17.62 | 0.01 | 1.809 | 30.62 | 6.19 | 7.6 | 92.2 | 0.2 | -6.02 | 0.61 | 0.86 | 4.20 | 3.1 | 0.003 | 0.89 | 0.0 | 0.04 | 18.05 | 0.00 | 0.760 | 9.90 | 3.34 | 5.2 | 94.8 | 0.0 | -1.17 | 0.99 | 0.64 | 0.88 | 3.54 | 9339 | 1139 | 6 | 0 | 8 | 4 | 0 | logfile |
✔ | 6AP1 | 8887 | 2022-04-06 | 2017-08-16 | 3.2 | 3.26 | — | 3.3 | 0.016 | 1.66 | 2.0 | 0.09 | 14.24 | 0.01 | 1.198 | 24.29 | 3.62 | 10.9 | 87.0 | 2.1 | -4.53 | 0.62 | 0.58 | 1.49 | 3.2 | 0.010 | 1.07 | 1.0 | 0.04 | 16.75 | 0.01 | 0.785 | 12.30 | 0.15 | 6.5 | 93.2 | 0.3 | -0.35 | 2.36 | 0.68 | 0.66 | 1.23 | 18838 | 2404 | 24 | 0 | 14 | 0 | 0 | logfile |
✔ | 6ZP5 | 11336 | 2022-04-06 | 2020-07-08 | 3.1 | 3.90 | 3.32 | 3.6 | 0.012 | 0.83 | 0.0 | 0.15 | 13.52 | 0.01 | 0.012 | 14.20 | 0.52 | 3.0 | 97.0 | 0.0 | -0.93 | 0.67 | 0.64 | 2.54 | 3.6 | 0.004 | 0.75 | 0.0 | 0.11 | 14.99 | 0.00 | 0.787 | 10.18 | 0.40 | 3.6 | 96.4 | 0.0 | 0.24 | 0.66 | 0.82 | 0.84 | 2.27 | 23615 | 2861 | 33 | 0 | 92 | 0 | 0 | logfile |
✔ | 6ZP7 | 11337 | 2022-04-06 | 2020-07-08 | 3.3 | 4.01 | 3.43 | 3.7 | 0.012 | 0.83 | 0.0 | 0.16 | 13.52 | 0.01 | 0.008 | 16.07 | 0.52 | 3.0 | 97.0 | 0.0 | -0.93 | 0.64 | 0.59 | 1.49 | 3.7 | 0.003 | 0.75 | 0.0 | 0.11 | 15.23 | 0.00 | 0.791 | 10.33 | 0.28 | 3.5 | 96.5 | 0.0 | 0.07 | 1.33 | 0.81 | 0.83 | 2.09 | 23615 | 2861 | 33 | 0 | 92 | 0 | 0 | logfile |
✔ | 7NYX | 12657 | 2022-04-06 | 2021-03-23 | 4.6 | 7.95 | 4.57 | 3.3 | 0.003 | 0.61 | 0.0 | 0.04 | 17.26 | 0.00 | 1.844 | 11.20 | 0.00 | 3.4 | 96.6 | 0.0 | 1.74 | 0.88 | 0.79 | — | 3.2 | 0.005 | 0.61 | 0.0 | 0.04 | 17.07 | 0.00 | 0.802 | 19.68 | 0.00 | 5.8 | 94.2 | 0.0 | 0.46 | 0.56 | 0.90 | 0.83 | — | 70784 | 4186 | 18 | 104 | 6 | 0 | 34688 | logfile |
✔ | 6QC7 | 4499 | 2022-04-05 | 2018-12-27 | 4.4 | 4.45 | 4.37 | 4.4 | 0.007 | 1.20 | 0.0 | 1.03 | 11.56 | 0.01 | 2.126 | 7.13 | 0.47 | 12.3 | 87.6 | 0.1 | -4.14 | 0.62 | 0.75 | — | 4.4 | 0.015 | 1.82 | 2.0 | 0.31 | 13.76 | 0.01 | 0.831 | 22.88 | 0.04 | 11.0 | 89.0 | 0.0 | -1.52 | 1.75 | 0.63 | 0.77 | — | 65353 | 8086 | 57 | 0 | 18 | 0 | 0 | logfile |
✔ | 6J51 | 0676 | 2022-04-09 | 2019-01-10 | 4.2 | 4.46 | — | 3.0 | 0.009 | 1.21 | 3.0 | 0.07 | 18.81 | 0.01 | 1.661 | 7.35 | 0.74 | 4.3 | 95.0 | 0.7 | -1.68 | 0.74 | 0.62 | — | 3.0 | 0.005 | 0.75 | 0.0 | 0.04 | 19.15 | 0.00 | 0.867 | 14.76 | 0.00 | 3.8 | 96.1 | 0.1 | 0.65 | 1.73 | 0.82 | 0.77 | — | 47661 | 5122 | 36 | 337 | 11 | 0 | 0 | logfile |
✔ | 7o1C | 12695 | 2022-04-12 | 2021-03-29 | 2.6 | 3.02 | 2.70 | 2.4 | 0.018 | 1.91 | 0.0 | 0.06 | 14.39 | 0.02 | 0.055 | 6.78 | 0.04 | 5.1 | 94.8 | 0.1 | -1.96 | 0.80 | 0.83 | 3.37 | 2.3 | 0.005 | 0.71 | 0.0 | 0.04 | 14.72 | 0.01 | 0.867 | 8.21 | 2.44 | 4.4 | 95.5 | 0.1 | -0.43 | 1.00 | 0.81 | 0.84 | 2.98 | 148175 | 6042 | 76 | 4638 | 489 | 800 | 0 | logfile |
✔ | 6oo2 | 20142 | 2022-04-05 | 2019-04-22 | 4.4 | 4.52 | — | 3.5 | 0.007 | 1.14 | 1.0 | 0.07 | 13.96 | 0.01 | 2.037 | 7.03 | 0.00 | 7.1 | 92.3 | 0.6 | -3.55 | 0.75 | 0.61 | — | 2.5 | 0.004 | 0.74 | 0.0 | 0.04 | 12.97 | 0.00 | 0.867 | 17.91 | 0.00 | 5.8 | 94.2 | 0.0 | 1.38 | 1.01 | 0.86 | 0.80 | — | 16691 | 2436 | 24 | 0 | 19 | 0 | 0 | logfile |
✔ | 6NDY | 0443 | 2022-04-05 | 2018-12-14 | 3.6 | 3.70 | — | 3.6 | 0.005 | 0.89 | 0.0 | 0.05 | 14.71 | 0.01 | 2.037 | 4.67 | 0.00 | 5.9 | 94.1 | 0.0 | -3.78 | 0.66 | 0.54 | 0.23 | 3.6 | 0.004 | 0.76 | 0.0 | 0.04 | 16.50 | 0.01 | 0.877 | 12.21 | 0.30 | 6.1 | 93.9 | 0.0 | -0.02 | 1.29 | 0.79 | 0.80 | 0.66 | 12531 | 1596 | 11 | 0 | 20 | 0 | 0 | logfile |
✔ | 7NVX | 12616 | 2022-04-06 | 2021-03-16 | 3.9 | 3.92 | 3.77 | 3.8 | 0.003 | 0.49 | 0.0 | 0.04 | 15.65 | 0.00 | 1.971 | 6.61 | 0.00 | 4.5 | 95.5 | 0.0 | 0.85 | 0.70 | 0.64 | 1.31 | 3.8 | 0.009 | 0.99 | 2.0 | 0.04 | 18.09 | 0.01 | 0.878 | 20.53 | 0.32 | 4.5 | 95.4 | 0.0 | -0.54 | 0.89 | 0.71 | 0.66 | 1.15 | 23663 | 2796 | 18 | 50 | 35 | 0 | 0 | logfile |
✔ | 7TDH | 25829 | 2022-04-05 | 2021-12-31 | 4.0 | 4.95 | 4.67 | 4.5 | 0.003 | 0.77 | 0.0 | 0.04 | 13.63 | 0.00 | 2.254 | 4.60 | 0.00 | 5.1 | 94.9 | 0.0 | -1.74 | 0.84 | 0.67 | — | 4.5 | 0.030 | 2.65 | 63.0 | 0.11 | 19.57 | 0.02 | 0.880 | 152.33 | 3.28 | 44.1 | 54.4 | 1.6 | -7.26 | 2.44 | 0.88 | 0.83 | — | 117532 | 13060 | 8 | 0 | 3616 | 0 | 0 | logfile |