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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6PUT | 20481 | 2023-08-12 | 2019-07-18 | 2.9 | 3.22 | 2.96 | 3.2 | 0.007 | 0.82 | 0.0 | 0.05 | 19.07 | 0.01 | 0.000 | 5.13 | 0.20 | 2.5 | 97.5 | 0.0 | -3.43 | 0.73 | 0.90 | 4.56 | 3.2 | 0.006 | 0.59 | 0.0 | 0.05 | 20.77 | 0.00 | 0.000 | 8.24 | 1.11 | 1.9 | 98.1 | 0.0 | 0.58 | 0.88 | 0.63 | 0.88 | 4.31 | 10976 | 1170 | 28 | 68 | 8 | 308 | 0 | logfile |
✔ | 6PUZ | 20485 | 2023-08-12 | 2019-07-18 | 2.8 | 3.10 | 2.87 | 3.1 | 0.008 | 0.86 | 0.0 | 0.05 | 19.70 | 0.01 | 0.000 | 5.85 | 0.19 | 2.2 | 97.8 | 0.0 | -2.67 | 0.74 | 0.89 | 4.50 | 3.0 | 0.003 | 0.50 | 0.0 | 0.04 | 21.39 | 0.00 | 0.000 | 8.06 | 0.68 | 2.1 | 97.9 | 0.0 | 0.67 | 0.40 | 0.70 | 0.90 | 4.06 | 11702 | 1230 | 28 | 72 | 10 | 340 | 0 | logfile |
✔ | 6SHT | 10205 | 2023-08-23 | 2019-08-08 | 2.73 | 2.88 | 2.75 | 2.8 | 0.015 | 1.55 | 0.0 | 0.07 | 19.28 | 0.01 | 0.000 | 7.75 | 5.56 | 0.6 | 98.8 | 0.6 | -2.82 | 0.81 | 0.91 | 3.74 | 2.8 | 0.002 | 0.53 | 0.0 | 0.04 | 19.52 | 0.00 | 0.000 | 5.30 | 1.95 | 1.7 | 97.9 | 0.4 | 5.47 | 1.48 | 0.71 | 0.84 | 1.97 | 37152 | 4176 | 24 | 0 | 48 | 1728 | 0 | logfile |
✔ | 6PUW | 20483 | 2023-08-12 | 2019-07-18 | 2.9 | 3.21 | 2.93 | 3.1 | 0.013 | 0.77 | 0.0 | 0.04 | 19.85 | 0.00 | 0.000 | 7.69 | 0.20 | 2.1 | 97.9 | 0.0 | -2.24 | 0.74 | 0.90 | 4.70 | 3.1 | 0.003 | 0.56 | 0.0 | 0.04 | 21.73 | 0.00 | 0.000 | 9.02 | 2.15 | 3.4 | 96.6 | 0.0 | 0.49 | 0.38 | 0.69 | 0.90 | 4.23 | 11116 | 1170 | 28 | 72 | 10 | 312 | 0 | logfile |
✔ | 6NJo | 9390 | 2023-08-15 | 2019-01-03 | 3.34 | 3.42 | — | 3.4 | 0.010 | 1.20 | 1.0 | 0.07 | 11.62 | 0.01 | 1.361 | 5.89 | 0.49 | 7.1 | 92.9 | 0.0 | -4.27 | 0.80 | 0.83 | 3.46 | 3.4 | 0.006 | 0.80 | 0.0 | 0.05 | 14.93 | 0.00 | 0.071 | 10.22 | 0.54 | 6.4 | 93.6 | 0.0 | -1.44 | 0.52 | 0.83 | 0.85 | 2.54 | 19090 | 2466 | 14 | 0 | 12 | 20 | 0 | logfile |
✔ | 7Y36 | 33590 | 2023-08-11 | 2022-06-10 | 2.8 | 3.76 | 2.72 | 3.7 | 0.007 | 0.73 | 0.0 | 0.05 | 12.89 | 0.00 | 2.152 | 7.06 | 0.00 | 4.2 | 95.8 | 0.0 | -1.26 | 0.57 | 0.54 | 0.34 | 3.6 | 0.003 | 0.75 | 0.0 | 0.04 | 16.83 | 0.00 | 0.249 | 10.79 | 3.23 | 3.9 | 96.1 | 0.0 | 0.37 | 1.49 | 0.63 | 0.77 | 2.04 | 9206 | 1151 | 7 | 0 | 1 | 0 | 0 | logfile |
✔ | 7URT | 26718 | 2023-08-09 | 2022-04-22 | 2.39 | 2.51 | 2.52 | 2.5 | 0.008 | 0.96 | 0.0 | 0.07 | 14.02 | 0.01 | 0.512 | 6.62 | 1.60 | 0.9 | 99.1 | 0.0 | 1.22 | 0.71 | 0.82 | 4.21 | 2.5 | 0.036 | 3.37 | 11.0 | 0.30 | 17.01 | 0.01 | 0.291 | 9.27 | 1.09 | 1.7 | 98.2 | 0.1 | 1.92 | 1.13 | 0.69 | 0.81 | 2.58 | 107880 | 13260 | 60 | 0 | 120 | 0 | 0 | logfile |
✔ | 8EET | 28057 | 2023-08-09 | 2022-09-07 | 3.1 | 3.36 | 3.21 | 3.4 | 0.007 | 0.92 | 0.0 | 0.06 | 12.28 | 0.00 | 0.312 | 9.93 | 1.07 | 0.5 | 99.5 | 0.0 | 1.87 | 0.72 | 0.82 | 3.55 | 3.4 | 0.037 | 2.69 | 0.0 | 0.32 | 14.46 | 0.00 | 0.378 | 13.19 | 0.11 | 1.1 | 98.9 | 0.0 | 2.07 | 1.31 | 0.68 | 0.83 | 2.96 | 107640 | 13260 | 60 | 0 | 120 | 0 | 0 | logfile |
✔ | 6M1D | 30041 | 2023-08-16 | 2020-02-25 | 4.5 | 6.53 | — | 4.6 | 0.005 | 1.20 | 0.0 | 0.06 | 18.16 | 0.01 | 2.043 | 20.67 | 9.51 | 9.3 | 89.8 | 0.9 | -5.09 | 0.69 | 0.76 | — | 4.6 | 0.005 | 1.04 | 0.0 | 0.05 | 14.90 | 0.01 | 0.441 | 31.95 | 0.00 | 11.3 | 88.3 | 0.4 | -4.03 | 0.67 | 0.68 | 0.70 | — | 21776 | 2706 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8A1W | 15091 | 2023-08-21 | 2022-06-02 | 2.56 | 2.20 | 2.53 | 2.4 | 0.004 | 0.56 | 0.0 | 0.04 | 15.09 | 0.00 | 2.014 | 2.96 | 0.32 | 1.1 | 98.9 | 0.0 | 1.65 | 0.60 | 0.72 | 3.88 | 2.4 | 0.004 | 0.58 | 0.0 | 0.04 | 16.95 | 0.00 | 0.766 | 8.09 | 1.86 | 3.0 | 97.0 | 0.0 | 0.24 | 1.46 | 0.63 | 0.82 | 3.75 | 30172 | 1908 | 16 | 0 | 16 | 289 | 14776 | logfile |
✔ | 6ZP5 | 11336 | 2023-08-17 | 2020-07-08 | 3.1 | 3.90 | 3.32 | 3.6 | 0.013 | 0.92 | 0.0 | 0.15 | 13.62 | 0.01 | 0.012 | 14.22 | 0.52 | 3.0 | 97.0 | 0.0 | -0.93 | 0.67 | 0.64 | 2.54 | 3.6 | 0.003 | 0.81 | 0.0 | 0.11 | 15.16 | 0.00 | 0.778 | 9.09 | 0.16 | 3.4 | 96.6 | 0.0 | 0.29 | 0.66 | 0.82 | 0.84 | 2.09 | 23615 | 2861 | 33 | 0 | 92 | 0 | 0 | logfile |
✔ | 6NJP | 9391 | 2023-08-16 | 2019-01-03 | 3.29 | 3.37 | — | 3.3 | 0.009 | 1.17 | 0.0 | 0.07 | 11.57 | 0.01 | 1.276 | 6.11 | 0.67 | 6.4 | 93.6 | 0.0 | -4.04 | 0.81 | 0.83 | 3.41 | 3.3 | 0.003 | 0.67 | 0.0 | 0.04 | 14.63 | 0.00 | 0.782 | 8.81 | 0.33 | 4.0 | 96.0 | 0.0 | -0.93 | 1.16 | 0.82 | 0.85 | 2.58 | 19607 | 2530 | 15 | 0 | 12 | 21 | 0 | logfile |
✔ | 7UMZ | 26610 | 2023-08-11 | 2022-04-08 | 3.09 | 3.37 | 3.21 | 3.3 | 0.004 | 0.87 | 0.0 | 0.04 | 17.35 | 0.01 | 2.198 | 7.00 | 2.38 | 6.1 | 93.3 | 0.6 | -1.01 | 0.68 | 0.70 | 1.58 | 3.3 | 0.060 | 2.98 | 178.0 | 0.19 | 19.49 | 0.02 | 0.810 | 51.66 | 2.96 | 27.0 | 70.3 | 2.8 | -6.90 | 1.64 | 0.75 | 0.86 | 2.31 | 111437 | 12516 | 12 | 0 | 3221 | 8 | 0 | logfile |
✔ | 8A1X | 15092 | 2023-08-20 | 2022-06-02 | 3.2 | 3.01 | 3.27 | 3.3 | 0.004 | 0.59 | 0.0 | 0.04 | 15.84 | 0.00 | 1.889 | 5.80 | 0.06 | 2.0 | 98.0 | 0.0 | 1.53 | 0.56 | 0.70 | 2.31 | 3.3 | 0.003 | 0.51 | 0.0 | 0.04 | 16.13 | 0.00 | 0.839 | 7.98 | 0.06 | 2.6 | 97.4 | 0.0 | 1.08 | 0.40 | 0.61 | 0.80 | 2.33 | 29510 | 1893 | 11 | 0 | 11 | 0 | 14655 | logfile |
✔ | 7NYX | 12657 | 2023-08-17 | 2021-03-23 | 4.6 | 7.95 | 4.57 | 3.3 | 0.003 | 0.61 | 0.0 | 0.04 | 17.28 | 0.00 | 1.844 | 11.21 | 0.00 | 3.4 | 96.6 | 0.0 | 1.74 | 0.88 | 0.79 | — | 3.2 | 0.004 | 0.59 | 0.0 | 0.04 | 17.03 | 0.00 | 0.850 | 17.45 | 0.00 | 5.3 | 94.7 | 0.0 | 0.67 | 0.56 | 0.90 | 0.83 | — | 70784 | 4186 | 18 | 104 | 6 | 0 | 34688 | logfile |
✔ | 7BSV | 30168 | 2023-08-11 | 2020-03-31 | 3.0 | 3.16 | — | 3.1 | 0.005 | 1.15 | 0.0 | 0.05 | 17.26 | 0.01 | 1.809 | 30.62 | 6.19 | 7.6 | 92.2 | 0.2 | -6.02 | 0.61 | 0.86 | 4.20 | 3.1 | 0.005 | 0.93 | 0.0 | 0.05 | 18.07 | 0.00 | 0.854 | 9.10 | 3.44 | 6.1 | 93.8 | 0.1 | -1.37 | 0.99 | 0.62 | 0.88 | 3.82 | 9339 | 1139 | 6 | 0 | 8 | 4 | 0 | logfile |
✔ | 6AP1 | 8887 | 2023-08-15 | 2017-08-16 | 3.2 | 3.26 | — | 3.3 | 0.016 | 1.66 | 2.0 | 0.09 | 14.24 | 0.01 | 1.198 | 24.32 | 3.62 | 10.9 | 87.0 | 2.1 | -4.53 | 0.62 | 0.58 | 1.49 | 3.2 | 0.003 | 0.70 | 0.0 | 0.04 | 16.52 | 0.00 | 0.868 | 9.81 | 0.10 | 5.6 | 94.1 | 0.3 | 0.79 | 2.40 | 0.67 | 0.64 | 1.36 | 18838 | 2404 | 24 | 0 | 14 | 0 | 0 | logfile |
✔ | 8A1Y | 15093 | 2023-08-21 | 2022-06-02 | 3.3 | 3.70 | 3.51 | 3.7 | 0.004 | 0.54 | 0.0 | 0.04 | 15.64 | 0.00 | 2.049 | 3.87 | 0.06 | 2.0 | 98.0 | 0.0 | 1.28 | 0.59 | 0.75 | 1.56 | 3.7 | 0.003 | 0.51 | 0.0 | 0.04 | 16.37 | 0.00 | 0.872 | 7.34 | 0.06 | 3.1 | 96.9 | 0.0 | 0.58 | 1.46 | 0.63 | 0.80 | 1.49 | 30045 | 1920 | 11 | 0 | 14 | 0 | 14864 | logfile |
✔ | 6oo2 | 20142 | 2023-08-14 | 2019-04-22 | 4.4 | 4.52 | — | 3.5 | 0.007 | 1.14 | 1.0 | 0.07 | 13.96 | 0.01 | 2.037 | 7.03 | 0.00 | 7.1 | 92.3 | 0.6 | -3.55 | 0.75 | 0.61 | — | 2.4 | 0.003 | 0.70 | 0.0 | 0.04 | 13.05 | 0.00 | 0.883 | 14.96 | 0.07 | 4.7 | 95.3 | 0.0 | 1.49 | 1.05 | 0.86 | 0.80 | — | 16691 | 2436 | 24 | 0 | 19 | 0 | 0 | logfile |
✔ | 7TDH | 25829 | 2023-08-13 | 2021-12-31 | 4.0 | 4.95 | 4.67 | 4.5 | 0.003 | 0.77 | 0.0 | 0.04 | 13.63 | 0.00 | 2.254 | 4.64 | 0.00 | 5.1 | 94.9 | 0.0 | -1.74 | 0.84 | 0.67 | — | 4.5 | 0.030 | 2.65 | 66.0 | 0.11 | 19.67 | 0.02 | 0.888 | 153.73 | 3.43 | 43.9 | 54.5 | 1.5 | -7.26 | 2.44 | 0.88 | 0.83 | — | 117532 | 13060 | 8 | 0 | 3616 | 0 | 0 | logfile |