Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7A5V	11657	2021-09-04	2020-08-22	1.7	1.73	1.69	1.8	0.014	1.65	0.0	0.09	13.53	0.02	0.000	2.30	0.48	2.2	97.8	0.0	-0.05	0.61	0.79	6.90	1.8	0.003	0.64	0.0	0.04	13.96	0.00	0.000	5.21	0.62	0.6	99.4	0.0	1.87	0.92	0.72	0.85	6.35	21155	2275	30	0	85	1015	0	logfile
✔	6PUW	20483	2021-09-03	2019-07-18	2.9	3.21	2.93	3.1	0.013	0.77	0.0	0.04	19.88	0.00	0.000	7.60	0.20	2.1	97.9	0.0	-2.24	0.74	0.90	4.70	3.1	0.003	0.56	0.0	0.04	21.67	0.00	0.000	7.93	0.82	3.5	96.5	0.0	0.67	0.88	0.70	0.90	4.20	11116	1170	28	72	10	312	0	logfile
✔	6PUZ	20485	2021-09-03	2019-07-18	2.8	3.10	2.87	3.1	0.008	0.87	0.0	0.05	19.45	0.01	0.000	5.85	0.19	2.2	97.8	0.0	-2.67	0.74	0.89	4.50	3.0	0.002	0.47	0.0	0.04	21.19	0.00	0.000	7.83	1.06	2.0	98.0	0.0	0.83	0.42	0.72	0.90	4.04	11702	1230	28	72	10	340	0	logfile
✔	6SHT	10205	2021-09-06	2019-08-08	2.73	2.88	2.78	2.8	0.015	1.55	0.0	0.07	17.80	0.01	0.000	10.21	5.56	0.6	98.8	0.6	-2.82	0.81	0.91	3.74	2.8	0.004	0.60	0.0	0.04	19.62	0.00	0.000	4.56	2.03	2.3	97.7	0.0	4.90	1.74	0.72	0.84	2.58	37152	4176	24	0	48	1728	0	logfile
✔	6PUT	20481	2021-09-03	2019-07-18	2.9	3.22	2.96	3.2	0.007	0.83	0.0	0.05	19.07	0.01	0.000	5.03	0.20	2.5	97.5	0.0	-3.43	0.73	0.90	4.56	3.2	0.004	0.56	0.0	0.04	20.55	0.00	0.000	7.33	0.51	1.9	98.1	0.0	0.83	0.88	0.67	0.89	4.25	10976	1170	28	68	8	308	0	logfile
✔	6PUY	20484	2021-09-03	2019-07-18	2.8	3.15	2.88	3.1	0.015	0.90	0.0	0.06	19.62	0.01	0.000	4.31	0.19	3.0	97.0	0.0	-3.07	0.75	0.90	4.33	3.1	0.003	0.57	0.0	0.04	20.99	0.00	0.000	7.95	1.74	2.8	97.2	0.0	0.70	3.18	0.67	0.89	4.11	11784	1232	28	72	10	404	0	logfile
✔	6NJo	9390	2021-09-04	2019-01-03	3.34	3.42	—	3.4	0.010	1.21	1.0	0.07	11.62	0.01	1.361	5.91	0.49	7.1	92.9	0.0	-4.27	0.80	0.83	3.46	3.4	0.006	0.80	0.0	0.05	14.70	0.01	0.060	9.83	0.59	6.5	93.5	0.0	-1.41	0.52	0.84	0.85	2.58	19090	2466	14	0	12	20	0	logfile
✔	5LZC	4123	2021-09-11	2016-09-29	4.8	5.11	5.27	4.8	0.009	1.21	10.0	0.08	12.67	0.02	1.994	5.26	0.11	5.7	92.4	1.8	-1.87	0.82	0.82	—	4.8	0.006	0.92	2.0	0.04	15.89	0.01	0.392	47.00	0.00	8.5	91.1	0.4	-2.08	1.88	0.84	0.85	—	152981	6432	64	4785	5	2	0	logfile
✔	6NJP	9391	2021-09-04	2019-01-03	3.29	3.37	—	3.3	0.009	1.18	0.0	0.07	11.57	0.01	1.276	6.16	0.67	6.4	93.6	0.0	-4.04	0.81	0.83	3.41	3.3	0.003	0.66	0.0	0.04	14.52	0.00	0.731	8.25	0.38	4.3	95.7	0.0	-0.85	1.16	0.84	0.85	2.47	19607	2530	15	0	12	21	0	logfile
✔	7NYX	12657	2021-09-04	2021-03-23	4.6	7.95	4.57	3.3	0.003	0.61	0.0	0.04	17.26	0.00	1.844	10.87	0.00	3.4	96.6	0.0	1.74	0.88	0.79	—	3.3	0.003	0.56	0.0	0.04	17.15	0.00	0.783	16.53	0.00	4.9	95.1	0.0	0.79	1.58	0.90	0.84	—	70784	4186	18	104	6	0	34688	logfile
✔	6ZP7	11337	2021-09-04	2020-07-08	3.3	4.01	3.43	3.7	0.012	0.83	0.0	0.16	13.52	0.00	0.008	15.90	0.52	3.0	97.0	0.0	-0.93	0.64	0.59	1.49	3.7	0.003	0.70	0.0	0.11	15.19	0.00	0.792	10.87	0.44	3.9	96.1	0.0	-0.01	1.41	0.82	0.84	2.14	23615	2861	33	0	92	0	0	logfile
✔	6ZP5	11336	2021-09-04	2020-07-08	3.1	3.90	3.32	3.6	0.012	0.83	0.0	0.15	13.52	0.00	0.012	14.01	0.52	3.0	97.0	0.0	-0.93	0.67	0.64	2.54	3.6	0.003	0.70	0.0	0.11	14.96	0.00	0.793	9.63	0.28	3.9	96.1	0.0	0.25	1.26	0.82	0.85	2.17	23615	2861	33	0	92	0	0	logfile
✔	5NCo	3617	2021-09-07	2017-03-06	4.8	5.02	—	4.8	0.007	1.08	0.0	0.05	15.62	0.00	1.168	8.50	9.43	3.1	96.8	0.1	-2.95	0.70	0.76	—	4.8	0.004	0.71	0.0	0.04	15.58	0.01	0.807	29.77	0.03	6.3	93.6	0.1	-0.45	1.77	0.71	0.84	—	101694	4738	43	3112	46	0	0	logfile
✔	6AP1	8887	2021-09-04	2017-08-16	3.2	3.26	—	3.3	0.016	1.66	2.0	0.09	14.24	0.01	1.198	23.89	3.62	10.9	87.0	2.1	-4.53	0.62	0.58	1.49	3.2	0.009	1.00	1.0	0.04	16.50	0.01	0.913	12.09	0.10	5.7	94.0	0.3	-0.15	2.37	0.73	0.74	1.09	18838	2404	24	0	14	0	0	logfile
✔	6QC5	4497	2021-09-03	2018-12-26	4.3	4.44	4.37	4.3	0.009	1.29	0.0	1.03	11.74	0.01	2.162	7.99	0.72	12.3	87.5	0.2	-4.12	0.64	0.77	—	4.3	0.010	1.76	0.0	0.31	13.47	0.01	0.922	24.87	0.06	9.7	90.3	0.0	-1.25	1.07	0.64	0.77	—	65691	8136	57	0	16	0	0	logfile
✔	6NDY	0443	2021-09-03	2018-12-14	3.6	3.70	—	3.6	0.004	0.89	0.0	0.05	14.71	0.01	2.037	4.67	0.00	5.9	94.1	0.0	-3.78	0.66	0.54	0.23	3.6	0.003	0.72	0.0	0.04	16.26	0.01	0.940	11.65	0.59	6.1	93.9	0.0	0.08	1.44	0.79	0.80	0.93	12531	1596	11	0	20	0	0	logfile
✔	6GEJ	4395	2021-09-06	2018-04-26	3.6	3.77	—	3.7	0.002	0.61	0.0	0.04	18.57	0.00	1.491	9.03	3.93	4.6	95.4	0.0	-2.70	0.82	0.77	0.98	3.7	0.004	0.69	0.0	0.04	20.48	0.00	0.964	10.02	0.23	4.3	95.7	0.0	0.13	0.87	0.83	0.79	0.93	43702	4683	29	308	151	0	0	logfile
✔	6FKH	4271	2021-09-06	2018-01-24	4.2	4.29	4.16	4.2	0.015	1.45	28.0	0.09	11.91	0.01	0.343	61.30	0.15	3.9	96.0	0.1	-0.16	0.63	0.67	—	4.2	0.007	0.92	0.0	0.05	13.68	0.01	0.983	21.79	0.05	3.8	96.1	0.1	0.20	1.62	0.69	0.79	—	39231	5201	31	0	10	0	0	logfile
✔	6oo2	20142	2021-09-03	2019-04-22	4.4	4.52	—	3.5	0.007	1.14	1.0	0.07	13.96	0.01	2.037	6.87	0.00	7.1	92.3	0.6	-3.55	0.75	0.61	—	2.5	0.003	0.67	0.0	0.04	13.03	0.00	0.991	12.23	0.00	4.1	95.9	0.0	2.10	1.10	0.86	0.80	—	16691	2436	24	0	19	0	0	logfile
✔	7o4L	12722	2021-09-05	2021-04-06	3.4	3.17	3.35	3.1	0.002	0.45	0.0	0.04	14.06	0.00	2.001	4.03	0.00	2.3	97.7	0.0	2.39	0.69	0.73	2.31	3.1	0.006	0.66	0.0	0.04	16.64	0.01	0.992	9.21	0.41	3.0	97.0	0.0	0.89	1.25	0.74	0.82	1.97	35159	4330	25	20	15	0	0	logfile

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