Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PUY	20484	2022-04-05	2019-07-18	2.8	3.15	2.88	3.1	0.015	0.90	0.0	0.06	19.62	0.01	0.000	4.27	0.19	3.0	97.0	0.0	-3.07	0.75	0.90	4.33	3.1	0.003	0.56	0.0	0.04	21.03	0.00	0.000	8.71	1.16	2.5	97.5	0.0	0.74	3.18	0.58	0.84	3.91	11784	1232	28	72	10	404	0	logfile
✔	6PUT	20481	2022-04-05	2019-07-18	2.9	3.22	2.96	3.2	0.007	0.82	0.0	0.05	19.07	0.01	0.000	5.03	0.20	2.5	97.5	0.0	-3.43	0.73	0.90	4.56	3.2	0.005	0.58	0.0	0.04	20.73	0.00	0.000	8.39	1.21	1.7	98.3	0.0	0.61	0.88	0.65	0.89	4.26	10976	1170	28	68	8	308	0	logfile
✔	6SHT	10205	2022-04-08	2019-08-08	2.73	2.88	2.78	2.8	0.015	1.55	0.0	0.07	17.80	0.01	0.000	10.21	5.56	0.6	98.8	0.6	-2.82	0.81	0.91	3.74	2.8	0.004	0.57	0.0	0.04	19.60	0.00	0.000	5.44	2.24	1.4	98.3	0.3	5.07	1.76	0.72	0.84	2.18	37152	4176	24	0	48	1728	0	logfile
✔	6PUW	20483	2022-04-05	2019-07-18	2.9	3.21	2.93	3.1	0.013	0.77	0.0	0.04	19.88	0.00	0.000	7.60	0.20	2.1	97.9	0.0	-2.24	0.74	0.90	4.70	3.1	0.005	0.58	0.0	0.04	21.70	0.00	0.000	8.17	1.23	3.2	96.8	0.0	0.37	0.36	0.68	0.90	4.32	11116	1170	28	72	10	312	0	logfile
✔	6PUZ	20485	2022-04-05	2019-07-18	2.8	3.10	2.87	3.1	0.008	0.87	0.0	0.05	19.45	0.01	0.000	5.85	0.19	2.2	97.8	0.0	-2.67	0.74	0.89	4.50	3.0	0.003	0.49	0.0	0.04	21.32	0.00	0.000	7.65	0.87	2.2	97.8	0.0	0.66	0.39	0.69	0.89	4.11	11702	1230	28	72	10	340	0	logfile
✔	5A9Z	6396	2022-04-13	2015-07-23	4.7	4.83	—	4.7	0.013	1.89	26.0	0.14	23.31	0.03	0.000	199.39	29.15	25.1	49.6	25.2	-7.73	0.81	0.65	—	4.7	0.007	1.03	0.0	0.05	19.42	0.01	0.000	40.39	0.19	21.0	76.7	2.4	-4.44	2.93	0.87	0.82	—	150547	6671	58	4527	131	0	0	logfile
✔	6NJo	9390	2022-04-06	2019-01-03	3.34	3.42	—	3.4	0.010	1.20	1.0	0.07	11.62	0.01	1.361	5.91	0.49	7.1	92.9	0.0	-4.27	0.80	0.83	3.46	3.4	0.003	0.68	0.0	0.04	14.74	0.00	0.155	8.95	0.29	4.8	95.2	0.0	-0.97	0.53	0.82	0.83	2.25	19090	2466	14	0	12	20	0	logfile
✔	6NJP	9391	2022-04-06	2019-01-03	3.29	3.37	—	3.3	0.009	1.17	0.0	0.07	11.57	0.01	1.276	6.16	0.67	6.4	93.6	0.0	-4.04	0.81	0.83	3.41	3.3	0.003	0.70	0.0	0.05	14.73	0.00	0.613	9.39	0.48	4.8	95.2	0.0	-1.19	1.15	0.83	0.85	2.70	19607	2530	15	0	12	21	0	logfile
✔	7BSV	30168	2022-04-04	2020-03-31	3.0	3.16	—	3.1	0.005	1.15	0.0	0.05	17.62	0.01	1.809	30.62	6.19	7.6	92.2	0.2	-6.02	0.61	0.86	4.20	3.1	0.003	0.89	0.0	0.04	18.05	0.00	0.760	9.90	3.34	5.2	94.8	0.0	-1.17	0.99	0.64	0.88	3.54	9339	1139	6	0	8	4	0	logfile
✔	6AP1	8887	2022-04-06	2017-08-16	3.2	3.26	—	3.3	0.016	1.66	2.0	0.09	14.24	0.01	1.198	24.29	3.62	10.9	87.0	2.1	-4.53	0.62	0.58	1.49	3.2	0.010	1.07	1.0	0.04	16.75	0.01	0.785	12.30	0.15	6.5	93.2	0.3	-0.35	2.36	0.68	0.66	1.23	18838	2404	24	0	14	0	0	logfile
✔	6ZP5	11336	2022-04-06	2020-07-08	3.1	3.90	3.32	3.6	0.012	0.83	0.0	0.15	13.52	0.01	0.012	14.20	0.52	3.0	97.0	0.0	-0.93	0.67	0.64	2.54	3.6	0.004	0.75	0.0	0.11	14.99	0.00	0.787	10.18	0.40	3.6	96.4	0.0	0.24	0.66	0.82	0.84	2.27	23615	2861	33	0	92	0	0	logfile
✔	6ZP7	11337	2022-04-06	2020-07-08	3.3	4.01	3.43	3.7	0.012	0.83	0.0	0.16	13.52	0.01	0.008	16.07	0.52	3.0	97.0	0.0	-0.93	0.64	0.59	1.49	3.7	0.003	0.75	0.0	0.11	15.23	0.00	0.791	10.33	0.28	3.5	96.5	0.0	0.07	1.33	0.81	0.83	2.09	23615	2861	33	0	92	0	0	logfile
✔	7NYX	12657	2022-04-06	2021-03-23	4.6	7.95	4.57	3.3	0.003	0.61	0.0	0.04	17.26	0.00	1.844	11.20	0.00	3.4	96.6	0.0	1.74	0.88	0.79	—	3.2	0.005	0.61	0.0	0.04	17.07	0.00	0.802	19.68	0.00	5.8	94.2	0.0	0.46	0.56	0.90	0.83	—	70784	4186	18	104	6	0	34688	logfile
✔	6QC7	4499	2022-04-05	2018-12-27	4.4	4.45	4.37	4.4	0.007	1.20	0.0	1.03	11.56	0.01	2.126	7.13	0.47	12.3	87.6	0.1	-4.14	0.62	0.75	—	4.4	0.015	1.82	2.0	0.31	13.76	0.01	0.831	22.88	0.04	11.0	89.0	0.0	-1.52	1.75	0.63	0.77	—	65353	8086	57	0	18	0	0	logfile
✔	6J51	0676	2022-04-09	2019-01-10	4.2	4.46	—	3.0	0.009	1.21	3.0	0.07	18.81	0.01	1.661	7.35	0.74	4.3	95.0	0.7	-1.68	0.74	0.62	—	3.0	0.005	0.75	0.0	0.04	19.15	0.00	0.867	14.76	0.00	3.8	96.1	0.1	0.65	1.73	0.82	0.77	—	47661	5122	36	337	11	0	0	logfile
✔	7o1C	12695	2022-04-12	2021-03-29	2.6	3.02	2.70	2.4	0.018	1.91	0.0	0.06	14.39	0.02	0.055	6.78	0.04	5.1	94.8	0.1	-1.96	0.80	0.83	3.37	2.3	0.005	0.71	0.0	0.04	14.72	0.01	0.867	8.21	2.44	4.4	95.5	0.1	-0.43	1.00	0.81	0.84	2.98	148175	6042	76	4638	489	800	0	logfile
✔	6oo2	20142	2022-04-05	2019-04-22	4.4	4.52	—	3.5	0.007	1.14	1.0	0.07	13.96	0.01	2.037	7.03	0.00	7.1	92.3	0.6	-3.55	0.75	0.61	—	2.5	0.004	0.74	0.0	0.04	12.97	0.00	0.867	17.91	0.00	5.8	94.2	0.0	1.38	1.01	0.86	0.80	—	16691	2436	24	0	19	0	0	logfile
✔	6NDY	0443	2022-04-05	2018-12-14	3.6	3.70	—	3.6	0.005	0.89	0.0	0.05	14.71	0.01	2.037	4.67	0.00	5.9	94.1	0.0	-3.78	0.66	0.54	0.23	3.6	0.004	0.76	0.0	0.04	16.50	0.01	0.877	12.21	0.30	6.1	93.9	0.0	-0.02	1.29	0.79	0.80	0.66	12531	1596	11	0	20	0	0	logfile
✔	7NVX	12616	2022-04-06	2021-03-16	3.9	3.92	3.77	3.8	0.003	0.49	0.0	0.04	15.65	0.00	1.971	6.61	0.00	4.5	95.5	0.0	0.85	0.70	0.64	1.31	3.8	0.009	0.99	2.0	0.04	18.09	0.01	0.878	20.53	0.32	4.5	95.4	0.0	-0.54	0.89	0.71	0.66	1.15	23663	2796	18	50	35	0	0	logfile
✔	7TDH	25829	2022-04-05	2021-12-31	4.0	4.95	4.67	4.5	0.003	0.77	0.0	0.04	13.63	0.00	2.254	4.60	0.00	5.1	94.9	0.0	-1.74	0.84	0.67	—	4.5	0.030	2.65	63.0	0.11	19.57	0.02	0.880	152.33	3.28	44.1	54.4	1.6	-7.26	2.44	0.88	0.83	—	117532	13060	8	0	3616	0	0	logfile

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