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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8EQU | 28546 | 2023-07-04 | 2022-10-09 | 2.8 | 3.03 | 2.80 | 3.0 | 0.004 | 0.79 | 0.0 | 0.04 | 12.39 | 0.00 | 2.317 | 8.25 | 0.00 | 1.9 | 98.1 | 0.0 | -0.12 | 0.64 | 0.76 | 2.12 | 3.0 | 0.003 | 0.61 | 0.0 | 0.03 | 14.52 | 0.00 | 2.138 | 7.45 | 3.04 | 1.7 | 98.3 | 0.0 | 0.23 | 1.09 | 0.68 | 0.83 | 2.86 | 5764 | 542 | 10 | 0 | 318 | 0 | 0 | logfile |
✔ | 6o0H | 0567 | 2023-07-15 | 2019-02-16 | 3.67 | 3.72 | 3.76 | 3.7 | 0.009 | 1.16 | 0.0 | 0.06 | 10.65 | 0.01 | 2.262 | 7.17 | 0.35 | 4.8 | 95.2 | 0.0 | -4.11 | 0.79 | 0.78 | 2.27 | 3.7 | 0.003 | 0.67 | 0.0 | 0.05 | 14.90 | 0.00 | 2.130 | 10.18 | 0.26 | 3.0 | 97.0 | 0.0 | -0.45 | 0.84 | 0.79 | 0.78 | 1.12 | 32012 | 4092 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 7RZV | 24779 | 2023-07-03 | 2021-08-27 | 2.11 | 2.24 | — | 2.0 | 0.005 | 0.35 | 0.0 | 0.03 | 14.68 | 0.00 | 2.348 | 5.44 | 0.00 | 0.0 | 100.0 | 0.0 | 3.06 | 0.79 | 0.80 | 2.21 | 2.0 | 0.004 | 0.37 | 0.0 | 0.03 | 15.99 | 0.00 | 2.228 | 4.86 | 0.67 | 0.0 | 100.0 | 0.0 | 5.66 | 0.87 | 0.83 | 0.83 | 1.88 | 2562 | 339 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XE9 | 22145 | 2023-07-10 | 2020-06-12 | 4.3 | 5.05 | 4.38 | 4.4 | 0.003 | 0.50 | 0.0 | 0.04 | 14.92 | 0.00 | 2.096 | 21.22 | 0.77 | 5.4 | 94.6 | 0.0 | -1.78 | 0.92 | 0.82 | — | 4.4 | 0.003 | 0.62 | 0.0 | 0.04 | 14.61 | 0.00 | 2.026 | 24.00 | 0.14 | 6.1 | 93.9 | 0.0 | 0.47 | 1.45 | 0.92 | 0.83 | — | 22081 | 2949 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oAY | 20005 | 2023-07-12 | 2019-03-18 | 3.3 | 3.38 | — | 3.3 | 0.012 | 1.19 | 0.0 | 0.07 | 17.27 | 0.01 | 1.815 | 18.01 | 1.36 | 9.9 | 89.6 | 0.5 | -5.50 | 0.72 | 0.77 | 2.04 | 3.3 | 0.002 | 0.69 | 0.0 | 0.04 | 18.05 | 0.00 | 2.124 | 16.15 | 0.66 | 5.9 | 94.0 | 0.1 | -2.13 | 1.25 | 0.73 | 0.79 | 1.44 | 27261 | 3386 | 13 | 0 | 37 | 0 | 0 | logfile |
✔ | 6AVo | 7010 | 2023-07-19 | 2017-09-04 | 3.8 | 3.86 | — | 3.8 | 0.009 | 0.93 | 1.0 | 0.05 | 9.59 | 0.00 | 0.972 | 35.05 | 0.82 | 9.3 | 90.6 | 0.1 | -3.41 | 0.76 | 0.80 | 2.50 | 3.8 | 0.004 | 0.75 | 0.0 | 0.04 | 15.64 | 0.00 | 2.104 | 15.31 | 0.72 | 4.4 | 95.5 | 0.0 | -0.03 | 0.89 | 0.78 | 0.80 | 1.67 | 47715 | 6192 | 30 | 0 | 2 | 0 | 0 | logfile |
✔ | 7Ao8 | 11837 | 2023-07-05 | 2020-10-14 | 4.5 | 5.23 | 4.51 | 3.6 | 0.011 | 1.51 | 8.0 | 0.26 | 16.21 | 0.01 | 1.219 | 8.80 | 4.18 | 6.9 | 92.5 | 0.6 | -3.46 | 0.62 | 0.31 | — | 3.6 | 0.002 | 0.66 | 0.0 | 0.04 | 14.05 | 0.00 | 1.997 | 16.46 | 0.00 | 3.1 | 96.9 | 0.0 | -0.64 | 2.63 | 0.85 | 0.72 | — | 10905 | 1350 | 9 | 0 | 8 | 0 | 0 | logfile |
✔ | 7V26 | 31637 | 2023-07-16 | 2021-08-07 | 3.85 | 3.78 | — | 3.8 | 0.003 | 0.53 | 0.0 | 0.04 | 10.87 | 0.00 | 2.234 | 7.30 | 0.16 | 5.3 | 94.7 | 0.0 | -3.84 | 0.87 | 0.77 | 1.15 | 3.8 | 0.004 | 0.71 | 0.0 | 0.04 | 13.88 | 0.00 | 2.115 | 14.19 | 0.44 | 10.0 | 90.0 | 0.0 | -2.18 | 1.29 | 0.88 | 0.81 | 1.50 | 35157 | 4506 | 12 | 0 | 45 | 0 | 0 | logfile |
✔ | 7JZ3 | 22529 | 2023-07-04 | 2020-09-01 | 2.56 | 2.99 | — | 3.0 | 0.003 | 0.62 | 0.0 | 0.05 | 13.64 | 0.00 | 2.211 | 10.50 | 1.09 | 5.8 | 94.2 | 0.0 | -2.54 | 0.51 | 0.62 | 2.00 | 3.0 | 0.006 | 0.88 | 0.0 | 0.05 | 16.75 | 0.00 | 2.011 | 16.84 | 5.94 | 8.6 | 91.4 | 0.0 | -2.04 | 1.63 | 0.47 | 0.65 | 1.61 | 8142 | 1038 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EG0 | 28108 | 2023-07-04 | 2022-09-10 | 3.53 | 4.58 | 3.65 | 4.0 | 0.002 | 0.49 | 0.0 | 0.04 | 11.73 | 0.00 | 2.269 | 7.87 | 0.00 | 0.5 | 99.5 | 0.0 | 1.82 | 0.89 | 0.83 | 1.71 | 4.1 | 0.004 | 0.55 | 0.0 | 0.04 | 13.47 | 0.00 | 2.195 | 11.32 | 0.00 | 2.3 | 97.7 | 0.0 | 1.60 | 0.57 | 0.90 | 0.85 | 1.98 | 6031 | 584 | 4 | 65 | 0 | 0 | 0 | logfile |
✔ | 7U6V | 26381 | 2023-07-07 | 2022-03-06 | 4.1 | 3.17 | 4.21 | 6.8 | 0.002 | 0.52 | 0.0 | 0.04 | 13.79 | 0.00 | 1.948 | 13.74 | 1.57 | 4.7 | 95.3 | 0.0 | -0.16 | 0.64 | 0.29 | — | 6.8 | 0.002 | 0.50 | 0.0 | 0.04 | 13.89 | 0.00 | 1.956 | 14.79 | 1.75 | 6.1 | 93.9 | 0.0 | -0.54 | 0.42 | 0.82 | 0.72 | — | 9997 | 637 | 14 | 0 | 0 | 23 | 4901 | logfile |
✔ | 6KLS | 0716 | 2023-07-06 | 2019-07-30 | 3.3 | 3.40 | 3.21 | 3.4 | 0.014 | 1.22 | 2.0 | 0.05 | 18.32 | 0.03 | 1.992 | 14.52 | 0.69 | 10.7 | 89.2 | 0.1 | -3.67 | 0.66 | 0.77 | 2.94 | 3.4 | 0.003 | 0.72 | 0.0 | 0.04 | 17.68 | 0.00 | 2.163 | 10.57 | 0.15 | 10.0 | 89.9 | 0.1 | -0.90 | 0.46 | 0.70 | 0.85 | 2.63 | 13011 | 1530 | 12 | 0 | 17 | 0 | 0 | logfile |
✔ | 6QD7 | 4520 | 2023-07-07 | 2019-01-01 | 3.1 | 3.30 | 3.16 | 3.2 | 0.009 | 1.62 | 12.0 | 0.09 | 14.57 | 0.01 | 2.233 | 4.23 | 4.53 | 4.7 | 95.1 | 0.2 | -0.85 | 0.58 | 0.67 | 2.72 | 3.2 | 0.004 | 0.75 | 0.0 | 0.05 | 15.55 | 0.00 | 2.099 | 8.84 | 0.98 | 5.8 | 94.2 | 0.0 | -0.99 | 1.00 | 0.62 | 0.71 | 2.54 | 14445 | 1815 | 21 | 0 | 45 | 0 | 0 | logfile |
✔ | 7E3C | 30979 | 2023-07-03 | 2021-02-08 | 4.2 | 3.87 | — | 3.7 | 0.026 | 1.55 | 0.0 | 0.05 | 13.84 | 0.01 | 2.151 | 21.49 | 0.00 | 17.2 | 82.3 | 0.5 | -3.63 | 0.79 | 0.79 | — | 3.7 | 0.004 | 0.75 | 0.0 | 0.05 | 13.96 | 0.00 | 2.140 | 14.75 | 0.00 | 12.6 | 87.4 | 0.0 | -3.24 | 1.57 | 0.79 | 0.79 | — | 2937 | 405 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7EL9 | 31177 | 2023-07-13 | 2021-04-09 | 3.2 | 3.41 | — | 3.4 | 0.003 | 0.58 | 2.0 | 0.04 | 14.56 | 0.00 | 2.202 | 11.39 | 2.99 | 11.0 | 88.9 | 0.1 | -3.18 | 0.71 | 0.75 | 2.17 | 3.3 | 0.003 | 0.74 | 0.0 | 0.04 | 16.77 | 0.00 | 2.137 | 15.68 | 0.23 | 10.9 | 89.0 | 0.1 | -1.45 | 1.15 | 0.72 | 0.78 | 1.69 | 28128 | 3560 | 10 | 14 | 10 | 0 | 0 | logfile |
✔ | 7Lo6 | 23462 | 2023-07-09 | 2021-02-09 | 3.9 | 4.03 | — | 3.8 | 0.011 | 0.99 | 0.0 | 0.07 | 14.09 | 0.01 | 1.951 | 19.52 | 0.64 | 12.9 | 87.1 | 0.0 | -5.44 | 0.85 | 0.85 | 2.14 | 3.8 | 0.004 | 0.78 | 0.0 | 0.05 | 15.61 | 0.00 | 2.104 | 12.52 | 0.53 | 6.4 | 93.6 | 0.0 | -2.20 | 1.65 | 0.85 | 0.85 | 1.73 | 18006 | 2198 | 27 | 0 | 62 | 0 | 0 | logfile |
✔ | 7BST | 30166 | 2023-07-18 | 2020-03-31 | 4.37 | 4.53 | — | 4.3 | 0.004 | 1.03 | 1.0 | 0.06 | 11.11 | 0.01 | 2.232 | 7.20 | 0.56 | 10.3 | 89.7 | 0.0 | -4.41 | 0.86 | 0.72 | — | 4.3 | 0.003 | 0.70 | 0.0 | 0.04 | 12.35 | 0.00 | 2.142 | 14.79 | 0.03 | 9.2 | 90.8 | 0.0 | -1.53 | 1.60 | 0.88 | 0.76 | — | 28266 | 3508 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7EoT | 31230 | 2023-07-11 | 2021-04-22 | 3.8 | 4.25 | — | 4.1 | 0.003 | 0.52 | 2.0 | 0.04 | 9.23 | 0.00 | 2.074 | 10.52 | 2.22 | 4.2 | 95.8 | 0.0 | 0.02 | 0.82 | 0.71 | 0.77 | 4.1 | 0.003 | 0.67 | 0.0 | 0.04 | 13.90 | 0.00 | 2.155 | 13.79 | 0.53 | 5.5 | 94.4 | 0.0 | -0.76 | 2.56 | 0.86 | 0.78 | 1.21 | 24598 | 3088 | 8 | 0 | 18 | 0 | 0 | logfile |
✔ | 6P7X | 20272 | 2023-07-15 | 2019-06-06 | 4.3 | 5.62 | 4.32 | 4.2 | 0.007 | 1.01 | 2.0 | 0.05 | 15.45 | 0.01 | 1.495 | 10.68 | 1.27 | 10.3 | 89.4 | 0.3 | -3.84 | 0.84 | 0.63 | — | 4.3 | 0.004 | 0.64 | 0.0 | 0.04 | 14.01 | 0.00 | 1.815 | 14.64 | 0.00 | 9.8 | 90.2 | 0.0 | -0.74 | 0.86 | 0.88 | 0.76 | — | 30537 | 1833 | 5 | 0 | 0 | 0 | 15288 | logfile |
✔ | 6PPJ | 20440 | 2023-07-06 | 2019-07-07 | 3.5 | 3.54 | — | 3.5 | 0.009 | 1.15 | 2.0 | 0.06 | 10.69 | 0.01 | 2.202 | 9.16 | 1.82 | 7.3 | 92.7 | 0.0 | -5.82 | 0.81 | 0.86 | 3.88 | 3.5 | 0.004 | 0.70 | 0.0 | 0.04 | 13.79 | 0.00 | 2.193 | 5.96 | 0.61 | 6.5 | 93.5 | 0.1 | -1.54 | 1.38 | 0.82 | 0.86 | 2.76 | 12004 | 1672 | 2 | 0 | 79 | 0 | 0 | logfile |