Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6TNY	10539	2022-04-06	2019-12-10	3.08	3.41	—	3.1	0.009	1.10	2.0	0.06	17.58	0.01	1.826	7.95	0.83	6.4	93.2	0.3	-3.49	0.83	0.76	2.04	3.1	0.003	0.68	0.0	0.04	18.15	0.00	2.071	8.62	0.24	5.2	94.8	0.0	-0.63	0.76	0.86	0.80	1.85	19726	2399	10	50	3	0	0	logfile
✔	6iXH	9747	2022-04-10	2018-12-10	4.0	4.11	—	4.0	0.010	1.11	0.0	0.06	15.28	0.01	2.228	6.64	0.60	7.6	92.0	0.4	-4.89	0.84	0.87	—	4.0	0.007	0.90	1.0	0.04	16.75	0.00	1.698	17.32	0.40	6.2	93.7	0.1	-2.41	0.63	0.84	0.86	—	52280	6785	25	0	0	0	0	logfile
✔	6XWQ	10635	2022-04-04	2020-01-24	3.41	4.27	—	4.0	0.003	0.61	0.0	0.04	13.42	0.00	2.171	10.53	0.00	3.5	96.2	0.2	-2.80	0.73	0.80	0.22	4.0	0.003	0.77	0.0	0.04	15.44	0.00	2.161	13.51	0.20	3.3	96.7	0.0	1.14	1.17	0.72	0.84	0.62	9572	1281	6	0	0	0	0	logfile
✔	6QXM	4669	2022-04-08	2019-03-07	4.1	2.35	—	3.5	0.008	1.25	0.0	0.06	18.91	0.01	2.333	6.84	8.63	9.3	90.7	0.0	-4.78	0.68	0.67	—	2.5	0.003	0.67	0.0	0.04	15.70	0.00	2.144	9.85	0.12	5.2	94.8	0.0	-1.10	1.63	0.66	0.65	—	37164	4704	12	0	0	0	0	logfile
✔	6SXA	10337	2022-04-04	2019-09-25	3.6	5.82	4.21	4.6	0.010	1.37	5.0	0.09	15.20	0.01	2.245	15.25	3.18	10.9	88.9	0.2	-4.66	0.83	0.67	-0.05	4.6	0.003	0.82	0.0	0.04	15.05	0.00	2.275	11.82	0.14	5.7	94.2	0.1	-0.22	1.72	0.91	0.85	0.41	7014	943	2	0	0	0	0	logfile
✔	6RAY	4787	2022-04-09	2019-04-08	4.28	4.39	4.31	4.4	0.013	1.77	39.0	0.16	18.46	0.02	1.031	19.77	7.45	17.4	81.8	0.8	-5.68	0.58	0.59	—	4.3	0.005	0.85	0.0	0.04	15.24	0.00	2.082	15.65	0.09	11.4	88.5	0.1	-3.33	1.14	0.60	0.57	—	39071	4887	18	13	6	0	0	logfile
✔	6J0B	9760	2022-04-09	2018-12-23	2.9	3.24	—	3.2	0.008	0.96	0.0	0.06	15.44	0.01	2.311	4.63	4.01	3.8	96.0	0.2	-3.73	0.57	0.83	3.57	3.2	0.003	0.65	0.0	0.04	17.20	0.00	2.150	8.26	3.97	3.4	96.6	0.0	-0.54	0.75	0.55	0.84	2.75	46788	6000	24	0	0	0	0	logfile
✔	6iZR	9757	2022-04-08	2018-12-20	4.7	4.86	—	4.7	0.004	0.90	0.0	0.05	11.50	0.01	2.086	6.63	0.26	6.9	93.1	0.0	-4.07	0.68	0.78	—	4.7	0.003	0.82	0.0	0.05	13.46	0.00	1.755	22.90	0.00	7.0	93.0	0.0	-0.28	2.05	0.66	0.71	—	84360	10470	60	0	60	0	0	logfile
✔	6CUE	7621	2022-04-08	2018-03-26	4.0	4.33	—	4.1	0.007	0.95	0.0	0.07	9.98	0.01	2.121	6.19	0.21	7.4	92.6	0.0	-3.55	0.82	0.83	—	4.0	0.003	0.72	0.0	0.04	13.39	0.00	2.134	11.85	0.33	6.7	93.3	0.0	-1.32	0.82	0.82	0.83	—	31692	3849	27	0	114	0	0	logfile
✔	6iP1	9697	2022-04-05	2018-11-01	3.9	4.05	—	4.0	0.006	1.03	0.0	0.05	11.71	0.00	1.321	7.91	0.34	7.5	92.5	0.0	-5.85	0.59	0.72	1.01	4.0	0.004	0.95	0.0	0.04	18.38	0.00	2.200	16.09	1.02	7.3	92.7	0.0	-0.36	1.25	0.60	0.75	-0.05	11245	1420	8	0	0	0	0	logfile
✔	6NSK	0499	2022-04-04	2019-01-24	2.7	2.82	2.55	3.1	0.008	1.11	0.0	0.06	14.47	0.01	2.213	4.78	0.00	3.6	96.4	0.0	-3.23	0.62	0.77	5.14	3.1	0.002	0.56	0.0	0.04	14.80	0.00	2.256	5.65	1.96	2.9	97.1	0.0	2.76	0.42	0.62	0.80	3.31	9096	1092	12	0	18	0	0	logfile
✔	3J9C	6224	2022-04-06	2014-12-25	2.9	3.02	—	3.1	0.005	1.11	0.0	0.05	14.41	0.00	2.277	7.02	6.13	4.8	95.2	0.0	-0.81	0.74	0.87	2.67	3.0	0.003	0.59	0.0	0.04	16.40	0.00	2.184	7.85	3.09	2.6	97.4	0.0	0.29	1.52	0.76	0.86	3.08	23296	2961	7	0	14	0	0	logfile
✔	5L4G	4002	2022-04-08	2016-05-25	3.9	4.09	—	4.0	0.007	0.96	2.0	0.05	15.50	0.01	1.788	6.11	3.00	9.6	88.5	1.9	-5.01	0.65	0.86	2.39	4.0	0.005	0.73	0.0	0.04	16.92	0.00	1.708	12.89	0.83	6.6	93.3	0.2	-0.63	2.91	0.63	0.81	1.85	135488	8637	40	0	11	0	67796	logfile
✔	5Z3U	6882	2022-04-05	2018-01-08	4.31	4.01	—	3.9	0.011	0.98	0.0	0.05	24.03	0.01	2.030	18.94	0.09	9.0	91.0	0.0	-5.01	0.77	0.81	—	3.9	0.003	0.63	0.0	0.04	24.49	0.00	2.052	11.46	0.00	5.5	94.5	0.0	0.31	0.80	0.75	0.76	—	16766	1341	12	292	3	0	0	logfile
✔	5Z3V	6883	2022-04-05	2018-01-08	4.22	3.73	—	3.7	0.004	0.63	0.0	0.04	23.01	0.00	2.160	12.97	0.00	7.8	92.2	0.0	-2.72	0.69	0.74	—	3.7	0.003	0.62	0.0	0.04	24.39	0.00	2.204	10.28	0.09	3.6	96.3	0.1	0.97	0.84	0.69	0.71	—	16758	1339	12	292	3	0	0	logfile
✔	5H1Q	9570	2022-04-06	2016-10-11	3.3	3.90	—	4.0	0.008	1.04	0.0	0.06	11.65	0.00	1.998	16.22	0.31	12.6	86.8	0.6	-5.07	0.44	0.69	3.01	3.9	0.004	0.80	0.0	0.04	16.47	0.00	2.137	8.99	0.93	9.3	90.1	0.6	-0.11	0.82	0.56	0.80	1.75	23784	2888	8	0	0	0	0	logfile
✔	5T6R	8368	2022-04-07	2016-09-01	4.2	4.31	4.24	4.2	0.007	1.05	1.0	0.09	16.99	0.00	1.229	1.49	5.55	7.5	90.6	1.9	-3.58	0.82	0.80	—	4.2	0.003	0.65	0.0	0.04	16.15	0.00	1.878	11.94	0.06	7.0	92.5	0.6	-1.60	0.95	0.83	0.81	—	126616	6441	51	3483	299	12	0	logfile
✔	6RQL	4984	2022-04-09	2019-05-16	2.9	2.93	—	3.0	0.009	1.09	1.0	0.06	12.93	0.01	1.977	6.62	0.74	8.3	91.7	0.0	-4.74	0.60	0.67	2.47	2.9	0.004	0.69	0.0	0.04	17.16	0.00	2.124	10.50	3.45	6.3	93.7	0.0	-0.91	1.92	0.69	0.73	2.10	51626	6246	20	84	0	0	0	logfile
✔	6GMH	0031	2022-04-09	2018-05-26	3.1	3.78	3.06	3.2	0.006	0.97	0.0	0.06	12.77	0.01	1.921	5.43	0.53	4.8	95.1	0.1	-2.86	0.83	0.81	2.87	3.3	0.013	0.93	2.0	0.05	14.86	0.00	2.002	12.62	0.29	5.1	94.9	0.0	-0.15	0.69	0.84	0.84	2.27	50239	6397	30	106	525	0	0	logfile
✔	6N9X	0382	2022-04-06	2018-12-04	4.1	4.18	—	4.1	0.006	0.84	0.0	0.05	13.69	0.02	2.131	3.65	0.60	3.9	96.1	0.0	-4.04	0.74	0.78	—	4.1	0.006	0.84	0.0	0.04	14.97	0.00	1.589	11.84	0.05	4.1	95.9	0.0	-1.18	1.28	0.77	0.81	—	19658	2419	14	31	12	0	0	logfile

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