Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6X0U	21984	2022-11-29	2020-05-17	3.6	3.62	—	3.6	0.004	0.62	0.0	0.04	14.50	0.00	2.277	5.74	0.00	3.7	96.1	0.3	-5.79	0.26	0.78	1.89	3.6	0.002	0.69	0.0	0.03	17.56	0.00	2.197	6.86	0.29	2.9	97.1	0.0	1.58	0.81	0.27	0.78	2.25	3091	398	4	0	0	0	0	logfile
✔	6VW2	21410	2022-11-29	2020-02-18	3.4	3.62	—	3.8	0.006	1.13	0.0	0.06	14.20	0.01	2.292	24.13	0.00	27.3	72.7	0.0	-4.46	0.42	0.71	2.71	3.9	0.005	0.96	0.0	0.05	14.94	0.00	2.171	15.12	0.95	19.5	80.5	0.0	-4.88	0.44	0.40	0.72	1.55	1800	240	10	0	0	0	0	logfile
✔	6WQK	21871	2022-11-29	2020-04-29	3.1	3.26	—	3.3	0.003	0.70	0.0	0.04	14.47	0.00	2.272	4.54	0.00	1.8	98.2	0.0	-5.40	0.48	0.84	4.99	3.3	0.004	0.72	0.0	0.05	13.47	0.00	2.242	4.54	0.00	4.4	95.6	0.0	-4.42	0.47	0.47	0.86	5.39	2070	285	5	0	0	0	0	logfile
✔	6WLV	21843	2022-11-29	2020-04-20	3.45	3.67	—	3.6	0.004	0.56	0.0	0.04	13.21	0.00	2.211	9.21	0.00	4.7	95.3	0.0	-0.61	0.80	0.82	2.72	3.6	0.003	0.58	0.0	0.04	15.51	0.00	2.123	7.63	0.00	3.5	96.5	0.0	2.44	1.26	0.79	0.83	2.43	4111	512	3	0	3	0	0	logfile
✔	6UWF	20922	2022-11-29	2019-11-05	3.08	3.26	—	3.3	0.008	1.08	0.0	0.05	16.40	0.01	2.294	2.14	0.00	3.1	96.9	0.0	-3.86	0.70	0.85	2.48	3.3	0.003	0.57	0.0	0.04	15.17	0.00	2.243	6.88	0.00	3.4	96.6	0.0	1.17	0.32	0.67	0.85	2.48	3178	417	1	0	2	0	0	logfile
✔	6L4S	0833	2022-11-29	2019-10-21	3.37	3.47	—	4.0	0.014	1.36	0.0	0.09	10.28	0.01	2.408	7.28	0.00	5.7	94.3	0.0	-3.73	0.28	0.67	4.12	4.1	0.008	0.87	0.0	0.06	15.50	0.00	2.214	12.64	0.44	14.5	85.5	0.0	-3.63	3.12	0.35	0.75	2.16	2268	330	6	0	0	0	0	logfile
✔	6VPS	21316	2022-11-29	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.90	6.11	2.7	0.004	0.53	0.0	0.03	20.06	0.00	2.403	4.27	0.98	6.9	93.1	0.0	-3.78	1.19	0.48	0.88	6.47	2736	279	9	0	0	0	0	logfile
✔	6XQo	22291	2022-11-29	2020-07-09	3.1	3.54	—	3.5	0.004	0.57	0.0	0.04	15.61	0.00	1.956	9.56	3.52	4.4	95.6	0.0	-2.83	0.76	0.75	2.70	3.5	0.003	0.65	0.0	0.04	16.71	0.00	2.150	11.62	0.00	2.4	97.6	0.0	0.53	1.26	0.78	0.78	1.41	4301	560	4	0	4	0	0	logfile
✔	6LRQ	0958	2022-11-29	2020-01-16	3.49	3.59	—	4.0	0.009	0.85	0.0	0.05	11.88	0.00	2.205	20.30	0.00	14.8	85.2	0.0	-4.51	0.46	0.71	1.87	4.1	0.006	0.85	0.0	0.05	14.46	0.00	2.147	19.93	0.74	12.8	87.2	0.0	-3.04	1.58	0.46	0.71	1.16	2628	378	6	0	0	0	0	logfile
✔	6HRF	0260	2022-11-29	2018-09-26	3.3	3.38	2.95	3.5	0.016	1.25	0.0	0.09	13.68	0.01	2.627	8.66	0.00	13.3	86.7	0.0	-4.08	0.38	0.74	2.93	3.5	0.005	0.84	0.0	0.05	16.58	0.00	2.181	9.08	0.25	6.7	93.3	0.0	-3.41	3.72	0.37	0.78	3.35	3522	462	6	0	0	0	0	logfile
✔	3JBS	6478	2022-11-29	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.1	0.003	0.63	0.0	0.04	17.65	0.00	2.262	7.24	1.97	1.7	98.3	0.0	1.01	1.32	0.21	0.81	3.18	1401	175	1	0	0	0	0	logfile
✔	6UWL	20923	2022-11-29	2019-11-05	3.62	3.73	—	3.7	0.008	1.16	0.0	0.06	16.05	0.01	2.303	6.24	0.00	7.6	92.2	0.3	-4.71	0.67	0.82	1.71	3.7	0.004	0.77	0.0	0.04	16.09	0.00	2.200	12.65	0.64	6.3	93.7	0.0	-0.08	0.55	0.66	0.81	1.34	3029	402	1	0	1	0	0	logfile
✔	6F1Y	4171	2022-11-29	2017-11-23	3.4	4.18	—	3.6	0.011	1.94	0.0	0.09	11.72	0.01	2.069	14.38	0.74	17.2	82.6	0.2	-4.92	0.50	0.74	0.93	3.6	0.004	0.88	0.0	0.04	15.64	0.00	2.238	16.71	0.49	9.8	90.2	0.0	-1.19	2.15	0.50	0.76	0.93	4316	472	2	0	111	0	0	logfile
✔	6UKJ	20806	2022-11-29	2019-10-05	3.3	3.53	3.32	3.4	0.007	0.91	0.0	0.05	13.71	0.01	2.114	6.29	0.79	4.5	95.1	0.3	-3.21	0.62	0.81	3.08	3.4	0.003	0.64	0.0	0.04	16.04	0.00	2.145	11.17	0.20	3.8	96.2	0.0	0.14	1.54	0.64	0.83	2.29	4625	582	4	0	1	0	0	logfile
✔	6RiU	4898	2022-11-29	2019-04-25	3.9	6.21	2.04	7.0	0.008	1.19	0.0	0.09	15.19	0.01	2.182	5.20	0.00	8.4	91.6	0.0	-5.77	0.59	0.69	0.56	7.1	0.003	0.67	0.0	0.03	16.53	0.00	2.057	13.17	0.00	5.1	94.9	0.0	-0.39	1.43	0.61	0.75	1.30	2882	182	2	0	0	0	1430	logfile
✔	5MS1	3562	2022-11-29	2016-12-29	4.25	4.22	—	4.2	0.014	1.51	0.0	0.07	9.30	0.01	2.413	2.10	0.00	5.5	93.5	1.1	-0.81	0.37	0.76	—	4.2	0.005	0.73	0.0	0.05	13.10	0.00	2.107	11.88	0.00	4.9	95.1	0.0	-0.60	1.53	0.46	0.85	—	4350	556	2	0	0	0	0	logfile
✔	6FU8	4319	2022-11-29	2018-02-26	3.2	4.43	2.97	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.003	0.82	0.0	0.04	14.91	0.00	2.261	15.40	0.00	10.0	88.8	1.2	-1.84	3.11	0.23	0.62	-0.89	1364	82	1	0	0	0	711	logfile
✔	6CoZ	7545	2022-11-29	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.82	0.0	0.04	4.96	0.00	2.368	4.42	0.00	8.3	91.7	0.0	-1.63	1.58	0.82	0.76	—	1586	320	2	0	0	0	0	logfile
✔	5M6S	3451	2022-11-29	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	24.50	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.3	0.003	0.59	0.0	0.03	18.68	0.00	2.007	8.17	0.00	5.2	94.8	0.0	2.82	2.46	0.03	0.06	—	1593	98	1	0	0	0	793	logfile
✔	6UKN	20807	2022-11-29	2019-10-05	3.65	3.85	—	3.8	0.005	0.78	0.0	0.05	14.79	0.01	2.280	4.10	0.47	7.7	92.3	0.0	-2.59	0.70	0.82	2.20	3.9	0.003	0.75	0.0	0.05	16.57	0.00	2.206	8.57	0.93	7.5	92.5	0.0	0.32	1.29	0.69	0.81	1.16	4109	536	4	0	8	0	0	logfile

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