Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6YRF	10888	2021-09-04	2020-04-20	3.9	4.58	—	4.2	0.006	0.78	0.0	0.05	14.50	0.00	2.028	27.02	0.21	12.8	87.1	0.1	-3.65	0.91	0.84	1.12	4.2	0.004	0.73	0.0	0.05	15.97	0.00	2.083	17.47	0.25	10.1	89.9	0.0	-0.85	0.63	0.91	0.83	0.85	24828	3108	4	0	0	0	0	logfile
✔	7JU4	22481	2021-09-05	2020-08-19	3.4	3.50	—	3.7	0.004	0.70	3.0	0.05	15.00	0.00	1.923	14.77	0.04	5.8	94.2	0.0	-0.77	0.58	0.71	1.64	3.7	0.006	0.77	2.0	0.04	16.62	0.00	1.923	13.57	0.26	4.4	95.6	0.0	0.08	0.41	0.60	0.77	1.24	133504	16960	90	14	101	0	0	logfile
✔	7L7Q	23216	2021-09-02	2020-12-30	3.7	4.37	—	4.0	0.005	0.91	0.0	0.05	15.54	0.00	1.873	23.50	0.16	10.2	89.5	0.3	-4.40	0.84	0.81	0.86	4.0	0.004	0.97	0.0	0.05	17.52	0.00	2.153	21.47	0.47	8.2	91.8	0.0	-0.15	1.47	0.84	0.79	0.58	5619	687	3	0	0	0	0	logfile
✔	6X17	21991	2021-09-02	2020-05-18	3.66	3.75	—	3.7	0.006	1.05	0.0	0.05	16.31	0.01	2.284	4.19	0.00	3.4	96.6	0.0	-3.74	0.64	0.85	2.25	3.7	0.003	0.67	0.0	0.04	16.14	0.00	2.082	8.58	0.72	3.1	96.9	0.0	2.04	0.53	0.64	0.84	1.73	9390	1245	9	0	3	3	0	logfile
✔	7K2T	22644	2021-09-03	2020-09-09	3.6	3.72	—	3.7	0.005	0.78	0.0	0.04	13.98	0.00	1.955	9.48	0.00	4.4	95.6	0.0	-3.30	0.69	0.84	2.63	3.7	0.004	0.64	0.0	0.04	16.16	0.00	1.975	9.52	0.27	4.0	96.0	0.0	-0.57	0.71	0.69	0.84	1.92	10275	1249	6	0	4	0	0	logfile
✔	7B3Y	11997	2021-09-06	2020-12-01	3.7	4.33	—	4.0	0.014	1.44	60.0	0.11	14.41	0.01	2.031	10.22	4.35	2.0	98.0	0.0	-1.02	0.75	0.67	1.09	4.0	0.003	0.68	0.0	0.05	15.00	0.00	2.212	13.37	0.47	1.3	98.7	0.0	1.62	3.01	0.88	0.84	1.26	90960	12120	60	0	0	0	0	logfile
✔	7LBF	23253	2021-09-03	2021-01-07	2.8	3.23	—	3.1	0.002	0.52	0.0	0.04	12.77	0.00	2.098	3.58	0.00	2.4	97.6	0.0	0.66	0.76	0.82	3.83	3.1	0.003	0.62	0.0	0.04	15.84	0.00	2.040	7.32	2.16	2.8	97.2	0.0	0.51	2.75	0.76	0.84	2.90	15656	1923	15	0	29	0	0	logfile
✔	7LBE	23252	2021-09-03	2021-01-07	2.9	3.31	—	3.2	0.002	0.46	0.0	0.04	12.74	0.00	2.200	3.43	0.00	2.8	97.2	0.0	1.20	0.69	0.82	3.12	3.2	0.004	0.64	0.0	0.04	15.83	0.00	2.123	8.40	2.11	3.6	96.4	0.0	0.66	0.45	0.71	0.85	2.85	13511	1653	13	0	27	0	0	logfile
✔	6UT4	20865	2021-09-04	2019-10-29	3.1	3.25	3.14	3.2	0.004	0.75	1.0	0.05	14.35	0.01	2.109	5.89	0.15	3.8	96.2	0.0	-3.72	0.77	0.84	2.49	3.2	0.002	0.53	0.0	0.04	15.66	0.00	2.005	9.80	0.56	4.0	96.0	0.0	-0.08	1.34	0.79	0.86	2.26	19126	2315	17	0	12	12	0	logfile
✔	6PM1	20383	2021-09-03	2019-07-01	3.0	3.21	—	3.3	0.008	1.00	0.0	0.06	9.57	0.01	2.325	5.62	0.00	4.7	95.3	0.0	-4.95	0.52	0.84	4.33	3.3	0.003	0.67	0.0	0.04	15.40	0.00	2.179	9.05	2.89	3.7	96.3	0.0	-0.44	0.73	0.54	0.85	3.98	14160	1730	15	0	20	0	0	logfile
✔	7KDV	22830	2021-09-07	2020-10-09	4.59	8.08	5.28	6.0	0.004	0.84	0.0	0.05	12.35	0.01	2.109	12.66	0.98	5.4	94.2	0.4	-1.39	0.88	0.72	—	6.0	0.003	0.64	0.0	0.04	12.44	0.00	2.089	14.32	0.00	3.1	96.9	0.0	0.31	1.67	0.84	0.64	—	51696	6312	42	0	72	0	0	logfile
✔	7KB5	22787	2021-09-03	2020-10-01	3.8	4.51	3.86	4.0	0.004	0.64	0.0	0.04	13.76	0.00	2.163	7.30	0.00	4.4	95.6	0.0	-1.47	0.65	0.84	1.16	4.0	0.008	0.82	0.0	0.04	15.15	0.00	2.067	13.35	0.10	4.6	95.4	0.0	1.64	1.06	0.66	0.86	1.42	9777	1252	6	0	0	0	0	logfile
✔	6X16	21990	2021-09-02	2020-05-18	3.39	3.34	—	3.4	0.005	0.98	0.0	0.05	15.10	0.01	2.322	3.97	0.31	4.8	95.2	0.0	-3.86	0.40	0.73	1.79	3.4	0.003	0.57	0.0	0.04	15.08	0.00	2.202	7.73	0.00	3.9	96.1	0.0	0.86	0.33	0.48	0.78	1.37	9438	1248	6	0	6	0	0	logfile
✔	7AHD	11783	2021-09-03	2020-09-24	3.4	3.48	3.35	3.4	0.009	1.10	0.0	0.05	13.47	0.00	2.215	8.72	0.79	3.8	96.2	0.0	-0.17	0.74	0.81	3.06	3.4	0.003	0.59	0.0	0.04	15.33	0.00	2.220	8.03	0.26	1.9	98.1	0.0	1.31	1.17	0.78	0.85	2.16	10562	1361	7	0	3	0	0	logfile
✔	7D4F	30572	2021-09-02	2020-09-23	2.57	2.76	—	2.7	0.011	0.99	0.0	0.06	13.80	0.01	1.326	5.89	0.76	2.2	97.8	0.0	-2.50	0.73	0.85	3.63	2.8	0.002	0.52	0.0	0.04	16.00	0.00	2.151	5.73	1.34	1.5	98.5	0.0	0.31	0.47	0.74	0.87	3.55	9534	1181	4	0	4	0	0	logfile
✔	7AHH	11786	2021-09-03	2020-09-24	3.5	3.59	3.55	3.6	0.009	1.07	0.0	0.07	14.19	0.00	2.213	14.02	0.23	7.6	92.4	0.0	-1.56	0.70	0.79	2.43	3.5	0.003	0.66	0.0	0.04	15.59	0.00	2.191	8.71	0.30	4.2	95.8	0.0	1.01	1.22	0.71	0.81	2.09	12125	1562	7	0	4	0	0	logfile
✔	6X15	21989	2021-09-03	2020-05-18	3.05	3.20	—	3.2	0.006	0.96	0.0	0.05	20.24	0.01	2.281	3.63	0.00	3.1	96.9	0.0	-3.80	0.73	0.87	2.90	3.2	0.002	0.52	0.0	0.04	15.72	0.00	2.178	6.17	0.00	2.9	97.1	0.0	1.75	0.46	0.74	0.88	2.49	10026	1260	9	0	51	9	0	logfile
✔	6Z6F	11092	2021-09-04	2020-05-28	3.11	3.88	—	3.5	0.006	1.03	1.0	0.06	16.32	0.01	2.160	3.62	3.55	7.1	92.8	0.0	-2.88	0.87	0.84	2.04	3.5	0.003	0.65	0.0	0.04	16.78	0.00	2.126	7.33	0.28	5.9	94.1	0.0	0.74	0.51	0.88	0.85	1.76	19217	2387	6	0	2	0	0	logfile
✔	7APX	11859	2021-09-04	2020-10-20	3.4	4.19	—	4.0	0.006	0.76	0.0	0.05	16.32	0.00	2.090	9.28	9.74	6.3	93.6	0.1	-2.30	0.83	0.83	1.26	4.0	0.006	0.79	0.0	0.04	15.86	0.00	2.129	8.94	0.11	4.8	95.2	0.0	1.32	0.48	0.81	0.79	1.00	20552	2870	6	0	19	0	0	logfile
✔	6ZHX	11220	2021-09-04	2020-06-24	2.5	3.01	2.42	2.8	0.015	2.04	3.0	0.10	27.67	0.03	2.560	0.14	0.00	1.2	98.8	0.0	-0.83	0.80	0.81	5.74	2.7	0.006	0.62	0.0	0.04	28.61	0.00	2.157	1.81	0.48	1.2	98.8	0.0	2.73	1.06	0.87	0.89	4.62	21561	759	12	290	0	0	9607	logfile

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