Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RZQ	24774	2023-02-16	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.003	0.31	0.0	0.03	15.07	0.00	2.343	5.71	0.00	0.0	100.0	0.0	5.84	0.30	0.82	0.82	2.01	2421	322	6	0	0	0	0	logfile
✔	7RX4	24724	2023-02-20	2021-08-21	3.8	3.99	—	4.0	0.003	0.49	0.0	0.04	13.38	0.00	1.928	12.86	0.00	0.0	100.0	0.0	6.26	0.60	0.78	1.41	3.9	0.003	0.51	0.0	0.04	16.36	0.00	2.337	5.07	1.27	0.0	100.0	0.0	6.07	0.49	0.62	0.80	0.89	13560	1740	60	0	0	0	0	logfile
✔	7RZU	24778	2023-02-16	2021-08-27	2.3	2.32	—	2.0	0.006	0.50	0.0	0.04	13.61	0.01	2.212	7.50	0.00	2.9	97.1	0.0	1.69	0.77	0.78	1.84	2.0	0.002	0.48	0.0	0.03	15.88	0.00	2.308	6.69	1.40	0.0	100.0	0.0	5.49	0.47	0.80	0.81	1.54	2439	324	6	0	0	0	0	logfile
✔	7RZS	24776	2023-02-16	2021-08-27	2.52	2.32	—	2.1	0.005	0.46	0.0	0.03	14.73	0.00	2.273	3.04	0.00	1.0	99.0	0.0	1.98	0.77	0.79	1.82	2.0	0.003	0.42	0.0	0.04	16.16	0.00	2.327	4.66	0.35	0.0	100.0	0.0	5.95	1.19	0.79	0.82	1.19	2445	324	6	0	0	0	0	logfile
✔	6PoM	20416	2023-02-17	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	17.29	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	5.0	0.010	1.28	0.0	0.06	21.46	0.01	1.930	61.80	0.00	0.0	0.0	0.0	—	1.76	0.75	0.80	—	4937	0	2	230	0	0	0	logfile
✔	7R6L	24281	2023-02-18	2021-06-22	2.85	3.04	—	3.0	0.008	0.89	0.0	0.05	16.80	0.01	1.985	4.24	0.00	0.0	0.0	0.0	—	0.67	0.86	—	3.0	0.006	0.73	0.0	0.04	16.40	0.01	1.882	7.54	0.00	0.0	0.0	0.0	—	0.09	0.62	0.86	—	7857	0	3	366	20	0	0	logfile
✔	8CZi	27098	2023-02-16	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.004	0.39	0.0	0.03	15.18	0.00	2.140	5.65	0.34	0.0	100.0	0.0	5.55	0.85	0.83	0.84	1.84	2550	339	6	0	0	0	0	logfile
✔	6LHV	0900	2023-02-21	2019-12-10	4.59	4.86	—	4.4	0.010	1.38	0.0	0.05	5.37	0.00	1.654	9.63	0.00	0.0	0.0	0.0	—	0.70	0.59	—	4.4	0.010	1.38	0.0	0.05	6.64	0.00	2.051	53.25	0.00	0.0	0.0	0.0	—	3.58	0.84	0.81	—	8456	0	3	0	1707	0	0	logfile
✔	7RZV	24779	2023-02-16	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.37	0.0	0.03	15.99	0.00	2.228	4.86	0.67	0.0	100.0	0.0	5.66	0.87	0.83	0.83	1.88	2562	339	6	0	0	0	0	logfile
✔	6X64	22069	2023-02-21	2020-05-27	3.7	4.01	—	3.7	0.008	1.34	0.0	0.05	9.32	0.01	2.584	0.78	0.00	0.0	0.0	0.0	—	0.68	0.84	—	3.7	0.009	1.23	0.0	0.05	5.42	0.00	2.111	10.35	0.00	0.0	0.0	0.0	—	2.35	0.69	0.86	—	15840	0	36	0	3168	0	0	logfile
✔	7R6M	24282	2023-02-18	2021-06-22	3.68	3.27	—	3.4	0.006	0.94	0.0	0.04	17.86	0.01	2.005	4.72	0.00	0.0	0.0	0.0	—	0.53	0.72	—	3.4	0.007	0.85	0.0	0.04	18.31	0.01	1.758	16.73	0.00	0.0	0.0	0.0	—	0.19	0.53	0.72	—	7755	0	3	362	13	0	0	logfile
✔	6oDJ	20021	2023-02-25	2019-03-26	3.5	3.75	—	3.7	0.009	1.50	0.0	0.07	11.32	0.01	2.438	2.03	0.00	0.0	0.0	0.0	—	0.81	0.81	—	3.7	0.012	1.73	0.0	0.06	7.96	0.00	2.090	10.56	0.00	0.0	0.0	0.0	—	0.60	0.82	0.83	—	25415	0	17	0	5083	0	0	logfile
✔	6X5i	22051	2023-02-18	2020-05-26	4.3	4.27	—	4.0	0.060	2.79	210.0	0.16	29.93	0.00	2.206	29.57	0.00	0.0	0.0	0.0	—	0.70	0.70	—	4.0	0.011	1.53	210.0	0.13	24.62	0.00	1.571	57.36	0.00	0.0	0.0	0.0	—	3.30	0.69	0.74	—	4480	70	70	0	280	0	0	logfile
✔	7RZT	24777	2023-02-16	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.0	0.003	0.32	0.0	0.03	15.52	0.00	2.337	5.44	0.35	0.0	100.0	0.0	6.26	0.24	0.80	0.83	2.93	2451	324	6	0	0	0	0	logfile
✔	7RZR	24775	2023-02-16	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.002	0.36	0.0	0.03	15.29	0.00	2.294	4.44	0.71	0.0	100.0	0.0	6.53	0.31	0.81	0.83	3.42	2448	324	6	0	0	0	0	logfile
✔	6LHW	0901	2023-02-21	2019-12-10	4.84	5.29	—	4.6	0.008	1.37	1.0	0.05	5.28	0.00	1.530	14.43	0.00	0.0	0.0	0.0	—	0.64	0.56	—	4.6	0.008	1.29	0.0	0.04	6.56	0.00	2.027	44.00	0.00	0.0	0.0	0.0	—	3.20	0.83	0.64	—	7644	0	3	0	1541	0	0	logfile
✔	5G2Y	3332	2023-02-20	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	11.90	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.02	0.0	0.05	23.60	0.01	1.933	73.59	0.00	0.0	0.0	0.0	—	2.96	0.89	0.78	—	13494	0	1	630	0	0	0	logfile
✔	7SAM	24952	2023-02-17	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	13.28	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.007	0.88	0.0	0.04	22.84	0.01	1.820	82.61	0.00	0.0	0.0	0.0	—	5.78	0.96	0.87	—	5399	0	1	169	0	0	1802	logfile
✔	6UES	20755	2023-02-17	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.87	0.0	0.04	21.14	0.01	1.785	36.43	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	7RX5	24725	2023-02-19	2021-08-21	3.4	3.65	—	3.6	0.002	0.25	0.0	0.03	11.98	0.00	2.288	5.05	0.00	0.0	100.0	0.0	4.54	0.70	0.85	3.58	3.6	0.003	0.35	0.0	0.03	13.46	0.00	2.257	6.36	0.00	0.0	100.0	0.0	5.01	0.27	0.71	0.88	2.75	9120	1160	40	0	0	0	0	logfile

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