Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6K0B	9900	2023-02-25	2019-05-05	4.3	4.49	—	4.2	0.003	0.78	0.0	0.04	14.21	0.01	2.011	5.73	0.66	6.1	93.9	0.0	-3.67	0.84	0.69	—	4.2	0.003	0.67	0.0	0.04	15.27	0.01	2.109	20.53	0.00	6.6	93.4	0.0	-0.69	1.79	0.88	0.79	—	25908	1376	16	682	2	0	0	logfile
✔	7NT6	12584	2023-02-25	2021-03-09	4.3	4.34	3.99	3.3	0.012	2.07	0.0	0.15	8.75	0.01	2.119	1.13	0.00	4.0	95.6	0.3	-2.44	0.72	0.76	—	3.3	0.002	0.62	0.0	0.05	8.09	0.00	2.161	2.67	0.00	4.4	95.6	0.0	1.97	0.64	0.71	0.71	—	24128	5582	17	90	0	0	0	logfile
✔	7NV0	12601	2023-02-19	2021-03-15	3.4	2.96	—	2.9	0.011	1.13	0.0	0.06	19.63	0.01	2.205	8.09	1.30	8.1	91.9	0.0	-4.56	0.60	0.68	2.36	2.9	0.003	0.68	0.0	0.04	20.46	0.00	1.491	12.21	0.54	2.2	97.8	0.0	-0.94	0.71	0.58	0.69	1.64	9928	1180	7	53	1	0	0	logfile
✔	7R19	14235	2023-02-25	2022-02-02	3.3	3.69	3.53	3.6	0.003	0.56	0.0	0.04	11.35	0.01	2.179	4.01	0.18	2.1	97.9	0.0	0.42	0.82	0.83	2.64	3.6	0.003	0.57	0.0	0.04	13.63	0.00	2.240	5.53	0.14	3.3	96.7	0.0	0.04	0.52	0.85	0.86	2.46	25388	3178	10	0	38	0	0	logfile
✔	7E0F	30931	2023-02-16	2021-01-27	3.02	3.18	—	3.5	0.016	0.99	0.0	0.07	15.88	0.00	2.341	9.76	0.00	12.8	87.2	0.0	-5.10	0.39	0.81	5.04	3.4	0.004	0.64	0.0	0.05	16.57	0.00	2.397	4.15	0.49	7.8	92.2	0.0	-3.39	1.23	0.39	0.80	3.92	2022	294	6	0	0	0	0	logfile
✔	7DR6	30824	2023-02-23	2020-12-26	4.1	4.22	—	4.2	0.002	0.55	0.0	0.04	7.81	0.00	2.196	10.04	0.12	4.9	94.9	0.1	-2.74	0.68	0.63	—	4.2	0.004	0.77	0.0	0.05	13.22	0.00	2.079	15.90	0.06	3.7	96.2	0.0	0.18	2.26	0.73	0.72	—	59957	7661	35	0	0	0	0	logfile
✔	7Z2G	14465	2023-02-18	2022-02-26	3.65	3.52	3.63	3.6	0.007	0.73	1.0	0.05	17.04	0.02	2.324	8.01	0.24	3.9	96.1	0.0	-0.62	0.63	0.76	2.35	3.6	0.003	0.69	0.0	0.04	18.39	0.01	2.142	9.04	0.12	3.7	96.3	0.0	-0.35	0.39	0.63	0.76	2.15	8406	943	4	36	1	0	0	logfile
✔	6XFA	22168	2023-02-28	2020-06-15	3.6	3.70	—	3.6	0.006	0.66	0.0	0.05	14.34	0.00	2.205	5.84	0.57	8.0	92.0	0.0	-3.71	0.81	0.85	2.34	3.7	0.004	0.67	0.0	0.04	15.69	0.00	2.248	6.06	0.26	6.3	93.7	0.0	0.03	1.23	0.79	0.86	1.86	31730	4060	20	0	20	0	0	logfile
✔	7TMQ	25999	2023-02-28	2022-01-19	3.3	3.42	—	3.4	0.004	0.57	2.0	0.04	12.67	0.00	2.026	9.95	0.38	2.7	97.3	0.0	1.28	0.77	0.83	3.33	3.4	0.004	0.54	0.0	0.04	13.96	0.00	1.947	9.19	0.38	2.9	97.1	0.0	1.25	0.27	0.79	0.86	2.79	31642	4736	16	0	2	0	0	logfile
✔	6DV3	8914	2023-02-22	2018-06-22	4.1	4.29	—	4.3	0.008	1.19	0.0	0.06	12.83	0.01	1.837	8.62	5.67	5.2	94.8	0.0	-4.68	0.63	0.69	—	4.3	0.003	0.72	0.0	0.05	12.62	0.00	2.023	10.79	0.02	3.7	96.3	0.0	-1.65	0.84	0.63	0.82	—	57975	7500	15	0	0	0	0	logfile
✔	7F8V	31493	2023-02-17	2021-07-02	3.3	2.62	—	3.3	0.005	0.87	0.0	0.05	14.10	0.01	2.253	7.08	0.00	4.1	95.9	0.0	-1.49	0.53	0.65	1.98	3.3	0.003	0.63	0.0	0.04	16.03	0.00	2.150	13.09	0.28	4.1	95.9	0.0	-0.72	1.12	0.53	0.68	1.26	6601	848	5	0	0	0	0	logfile
✔	7SVV	25454	2023-02-24	2021-11-19	3.54	3.06	3.44	3.5	0.020	1.88	10.0	0.10	14.27	0.01	1.320	4.73	0.00	1.4	98.6	0.0	-0.21	0.56	0.75	2.17	3.4	0.003	0.55	0.0	0.04	18.07	0.00	1.922	5.10	0.21	3.3	96.7	0.0	1.44	1.61	0.61	0.82	1.70	23046	2710	32	38	20	0	0	logfile
✔	7KGi	22871	2023-02-24	2020-10-16	3.34	3.13	—	3.2	0.005	0.81	2.0	0.05	14.36	0.01	2.021	7.63	0.82	1.9	98.1	0.0	1.36	0.64	0.77	2.19	3.1	0.005	0.66	0.0	0.04	16.28	0.00	2.165	9.66	0.47	2.1	97.9	0.0	1.17	0.44	0.67	0.82	2.04	23533	3060	6	0	6	0	0	logfile
✔	7R8C	24315	2023-02-18	2021-06-26	3.7	4.19	—	4.1	0.002	0.49	0.0	0.04	12.82	0.00	2.073	6.73	0.21	4.8	95.2	0.0	-1.63	0.68	0.85	1.76	4.1	0.002	0.66	0.0	0.04	14.79	0.00	2.156	8.76	0.21	5.1	94.9	0.0	1.17	1.05	0.71	0.87	1.83	8538	1090	2	0	0	0	0	logfile
✔	6N38	9341	2023-02-25	2018-11-14	3.7	3.82	—	3.8	0.013	1.29	0.0	0.08	10.00	0.01	2.216	1.17	0.31	2.7	97.2	0.1	0.10	0.78	0.79	2.54	3.7	0.002	0.65	0.0	0.04	14.39	0.00	2.192	6.42	0.16	2.2	97.8	0.0	0.89	0.83	0.81	0.83	2.23	24456	3098	11	0	39	0	0	logfile
✔	7AWA	11928	2023-02-17	2020-11-06	3.5	3.83	—	3.6	0.003	0.64	0.0	0.04	14.22	0.00	2.126	6.77	0.00	5.8	94.2	0.0	-2.52	0.57	0.81	2.14	3.7	0.002	0.52	0.0	0.04	15.06	0.00	2.163	6.96	0.00	3.7	96.3	0.0	-0.59	1.17	0.54	0.80	1.51	5310	328	1	0	0	0	2703	logfile
✔	6ZGF	11204	2023-02-25	2020-06-18	3.1	3.27	3.13	3.2	0.007	0.84	0.0	0.07	13.24	0.02	2.112	5.22	0.76	6.5	93.5	0.0	-2.49	0.80	0.85	3.88	3.2	0.003	0.58	0.0	0.04	14.58	0.00	2.217	4.64	0.18	5.7	94.3	0.0	-1.33	0.37	0.79	0.87	3.41	26163	3180	36	0	93	0	0	logfile
✔	7R17	14233	2023-02-24	2022-02-02	3.7	4.04	3.84	3.9	0.003	0.50	0.0	0.04	12.77	0.01	2.221	5.15	0.50	3.1	96.9	0.0	0.37	0.83	0.83	2.01	3.9	0.002	0.51	0.0	0.04	14.34	0.00	2.136	7.04	0.12	3.1	96.9	0.0	0.63	0.42	0.82	0.82	1.45	23626	2981	7	0	22	0	0	logfile
✔	7oRJ	13039	2023-02-22	2021-06-06	3.9	3.52	—	3.6	0.006	0.80	0.0	0.05	13.37	0.00	2.203	8.52	0.71	3.3	96.7	0.0	0.20	0.77	0.77	1.81	3.6	0.003	0.54	0.0	0.04	14.85	0.00	2.143	10.44	0.05	2.9	97.1	0.0	0.49	1.67	0.78	0.78	1.72	18197	2129	5	35	3	0	0	logfile
✔	6PLZ	20381	2023-02-21	2019-07-01	3.0	3.68	—	3.5	0.006	0.94	0.0	0.06	9.68	0.01	2.338	4.40	0.00	5.3	94.7	0.0	-5.25	0.60	0.85	4.29	3.5	0.003	0.64	0.0	0.05	15.71	0.00	2.123	9.40	2.65	3.0	97.0	0.0	-0.63	1.07	0.54	0.83	3.25	14210	1725	15	0	20	0	0	logfile

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