Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6CJT	7483	2023-08-13	2018-02-26	3.46	3.58	—	3.5	0.015	1.43	0.0	0.07	14.16	0.01	2.280	5.70	0.59	7.4	92.6	0.0	-3.58	0.72	0.84	2.63	3.5	0.003	0.71	0.0	0.04	13.91	0.00	2.206	8.06	0.15	5.6	94.4	0.0	1.53	0.71	0.73	0.87	1.62	13208	1584	8	0	28	0	0	logfile
✔	8DNF	27565	2023-08-12	2022-07-11	3.38	3.71	3.49	3.9	0.005	0.68	0.0	0.04	15.96	0.01	2.266	4.74	0.79	2.8	97.2	0.0	-0.81	0.56	0.81	1.68	3.9	0.005	0.71	0.0	0.05	16.55	0.00	1.847	4.99	0.32	5.6	94.4	0.0	-1.11	1.07	0.66	0.89	1.70	11812	1496	8	0	12	0	0	logfile
✔	7LPB	23475	2023-08-15	2021-02-11	3.54	3.01	3.50	3.6	0.012	1.07	0.0	0.06	18.06	0.01	2.226	10.00	0.00	5.7	94.3	0.0	-1.27	0.61	0.75	2.16	3.6	0.002	0.51	0.0	0.04	16.38	0.00	2.293	5.88	0.25	1.7	98.3	0.0	1.02	1.62	0.60	0.69	1.48	18392	2384	8	0	28	0	0	logfile
✔	7WSo	32762	2023-08-09	2022-01-30	3.03	3.25	—	3.3	0.014	1.29	0.0	0.07	10.67	0.01	2.351	3.25	0.85	8.7	91.3	0.0	-2.93	0.63	0.81	3.97	3.2	0.004	0.65	0.0	0.04	14.22	0.00	2.324	4.31	0.00	3.6	96.4	0.0	-0.35	1.27	0.66	0.84	3.03	6204	780	4	0	0	0	0	logfile
✔	7WHS	32510	2023-08-15	2021-12-31	3.1	3.49	—	3.5	0.005	0.78	1.0	0.06	16.31	0.01	2.197	8.40	0.33	8.2	91.8	0.0	-1.09	0.68	0.79	3.09	3.5	0.003	0.60	0.0	0.05	17.29	0.00	2.092	9.88	0.27	7.2	92.8	0.0	-1.32	1.13	0.69	0.82	2.89	17232	2196	12	0	12	0	0	logfile
✔	7S1Z	24813	2023-08-09	2021-09-02	3.3	3.78	—	3.9	0.003	0.70	0.0	0.04	12.33	0.01	2.245	12.11	0.18	9.4	90.6	0.0	-0.47	0.30	0.50	0.99	3.9	0.004	0.63	0.0	0.04	14.70	0.00	2.159	10.34	0.18	9.3	90.7	0.0	-0.08	0.47	0.47	0.69	1.74	6416	944	2	0	0	0	0	logfile
✔	7KTT	23029	2023-08-10	2020-11-24	4.17	4.46	—	4.2	0.007	1.04	0.0	0.06	13.23	0.01	2.239	12.66	0.25	5.7	94.3	0.0	-5.41	0.81	0.78	—	4.2	0.003	0.73	0.0	0.04	13.82	0.00	2.116	20.56	0.00	3.3	96.7	0.0	0.00	0.67	0.81	0.76	—	7568	994	1	0	0	0	0	logfile
✔	7EVP	31339	2023-08-10	2021-05-21	3.2	3.77	—	3.7	0.008	0.87	0.0	0.06	9.80	0.01	2.328	3.80	0.26	6.2	93.8	0.0	-5.27	0.64	0.77	3.74	3.6	0.003	0.62	0.0	0.05	13.72	0.00	2.294	8.36	0.40	5.6	94.4	0.0	-1.84	0.63	0.69	0.81	2.98	6616	840	4	0	0	0	0	logfile
✔	7LPC	23476	2023-08-14	2021-02-11	3.06	2.87	2.85	3.1	0.013	1.23	0.0	0.21	20.11	0.00	2.188	5.69	0.00	2.0	98.0	0.0	0.83	0.64	0.80	2.87	3.1	0.002	0.44	0.0	0.03	14.73	0.00	2.212	6.03	0.07	2.4	97.6	0.0	2.33	0.57	0.66	0.84	2.71	15256	1816	8	0	40	0	0	logfile
✔	7RHY	24471	2023-08-09	2021-07-19	3.91	4.12	4.00	4.0	0.005	0.80	0.0	0.05	21.78	0.01	2.404	3.31	0.80	2.0	98.0	0.0	-1.06	0.74	0.76	2.28	4.1	0.004	0.64	0.0	0.04	23.26	0.00	2.317	5.99	0.40	4.7	95.3	0.0	1.39	0.90	0.74	0.78	1.86	6350	301	2	49	0	0	2957	logfile
✔	6XLC	22239	2023-08-11	2020-06-28	3.66	3.01	—	3.7	0.003	0.52	0.0	0.04	12.74	0.00	2.079	6.07	0.00	1.6	98.4	0.0	-2.69	0.66	0.64	1.16	3.6	0.003	0.58	0.0	0.04	15.85	0.00	1.867	12.19	0.18	3.0	97.0	0.0	-0.17	1.81	0.72	0.75	2.03	9858	1212	4	0	4	0	0	logfile
✔	6AGB	9616	2023-08-19	2018-08-10	3.48	3.60	—	3.5	0.003	0.84	0.0	0.04	12.88	0.01	1.877	5.10	0.18	5.9	94.1	0.1	-3.53	0.69	0.68	0.63	3.5	0.003	0.67	0.0	0.04	16.15	0.00	2.078	14.56	0.41	6.7	93.3	0.0	-0.55	2.20	0.77	0.83	1.16	27190	2404	11	369	1	0	0	logfile
✔	7D7M	30608	2023-08-11	2020-10-05	3.3	2.94	3.16	3.3	0.004	0.64	0.0	0.06	14.43	0.00	2.208	10.07	0.00	1.3	98.7	0.0	0.14	0.64	0.75	2.13	3.3	0.003	0.63	0.0	0.04	15.19	0.00	2.189	9.64	0.44	2.1	97.9	0.0	0.75	0.55	0.62	0.77	1.71	7326	1031	6	0	1	0	0	logfile
✔	6oSK	20184	2023-08-29	2019-05-01	3.6	3.41	—	3.3	0.008	0.87	1.0	0.05	14.64	0.02	1.837	5.18	0.51	5.2	94.6	0.1	-4.40	0.78	0.85	2.75	3.3	0.007	0.74	0.0	0.04	15.73	0.01	1.778	14.48	1.09	5.8	94.1	0.0	-1.26	1.74	0.78	0.85	1.70	146659	5969	65	4642	309	0	0	logfile
✔	7EW3	31346	2023-08-11	2021-05-24	3.1	3.34	—	3.4	0.004	0.50	0.0	0.04	14.39	0.00	2.274	4.63	0.00	1.4	98.6	0.0	1.36	0.66	0.77	2.23	3.4	0.003	0.55	0.0	0.04	15.66	0.00	2.069	4.79	0.00	2.7	97.3	0.0	1.13	1.36	0.65	0.79	2.87	9072	1149	6	0	5	0	0	logfile
✔	7KTU	23030	2023-08-10	2020-11-24	4.15	4.49	—	4.2	0.006	1.05	0.0	0.05	12.61	0.01	2.259	12.91	0.37	4.3	95.7	0.0	-5.35	0.81	0.79	—	4.2	0.003	0.79	0.0	0.04	13.23	0.00	2.086	18.78	0.00	3.4	96.6	0.0	-0.16	0.95	0.80	0.76	—	7577	995	1	0	0	0	0	logfile
✔	6BGi	7095	2023-08-10	2017-10-28	3.8	4.07	3.58	4.0	0.008	1.00	0.0	0.05	8.91	0.01	2.002	48.38	0.00	16.1	83.9	0.0	-5.29	0.47	0.64	0.86	4.0	0.004	0.86	0.0	0.04	14.96	0.00	1.980	17.77	0.65	11.9	88.1	0.0	-2.04	1.10	0.48	0.66	1.53	7774	1020	4	0	4	0	0	logfile
✔	7S88	24890	2023-08-17	2021-09-17	2.69	3.00	—	2.9	0.013	1.48	4.0	0.06	19.32	0.01	2.234	6.97	1.31	3.6	96.4	0.0	-4.89	0.64	0.84	5.07	2.9	0.003	0.56	0.0	0.04	17.55	0.00	2.213	8.43	1.41	3.1	96.9	0.0	1.34	0.98	0.62	0.85	3.44	22201	2456	12	0	65	144	0	logfile
✔	7K4C	22664	2023-08-16	2020-09-15	3.78	4.46	—	4.3	0.009	1.09	0.0	0.06	11.45	0.01	2.296	5.28	0.00	11.4	88.5	0.2	-5.34	0.74	0.80	1.36	4.3	0.004	0.87	0.0	0.04	14.91	0.00	2.187	15.39	0.71	9.6	90.4	0.0	-2.22	0.97	0.73	0.78	0.98	19744	2444	8	0	7	0	0	logfile
✔	8C4U	16429	2023-08-12	2023-01-04	3.36	3.57	3.40	3.5	0.005	0.74	1.0	0.05	16.57	0.00	2.058	7.62	0.81	3.7	96.3	0.0	0.43	0.77	0.83	2.59	3.5	0.004	0.55	0.0	0.04	16.87	0.00	2.033	7.67	0.27	3.6	96.4	0.0	1.06	1.14	0.79	0.84	2.51	10952	1260	4	38	1	0	0	logfile

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