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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6BWi | 7299 | 2023-07-11 | 2017-12-15 | 3.7 | 3.76 | — | 3.7 | 0.011 | 1.39 | 4.0 | 0.09 | 12.09 | 0.01 | 1.745 | 22.56 | 1.36 | 8.1 | 91.5 | 0.4 | -5.08 | 0.67 | 0.73 | 2.06 | 3.7 | 0.089 | 4.99 | 124.0 | 0.27 | 21.79 | 0.03 | 1.600 | 112.56 | 5.62 | 43.9 | 49.5 | 6.5 | -8.57 | 2.58 | 0.80 | 0.86 | 2.01 | 23491 | 2484 | 8 | 0 | 813 | 0 | 0 | logfile |
✔ | 6S8F | 10120 | 2023-07-15 | 2019-07-09 | 4.0 | 4.88 | — | 3.9 | 0.007 | 1.26 | 0.0 | 0.06 | 11.68 | 0.01 | 1.859 | 6.71 | 0.80 | 9.6 | 90.3 | 0.1 | -4.38 | 0.88 | 0.77 | — | 3.9 | 0.042 | 2.95 | 51.0 | 0.11 | 17.89 | 0.02 | 1.488 | 187.53 | 3.85 | 53.1 | 44.5 | 2.4 | -7.96 | 2.39 | 0.90 | 0.88 | — | 33664 | 3530 | 4 | 0 | 1616 | 0 | 0 | logfile |
✔ | 3J9L | 2871 | 2023-07-05 | 2015-02-04 | 4.0 | 4.10 | — | 4.0 | 0.022 | 1.96 | 105.0 | 0.12 | 19.47 | 0.01 | 1.058 | 81.48 | 27.30 | 10.5 | 88.6 | 0.9 | -4.09 | 0.66 | 0.68 | — | 4.0 | 0.048 | 3.15 | 43.0 | 0.12 | 19.35 | 0.02 | 1.814 | 99.41 | 4.32 | 39.9 | 58.2 | 1.9 | -7.71 | 2.86 | 0.73 | 0.81 | — | 112951 | 8688 | 31 | 0 | 8320 | 0 | 0 | logfile |
✔ | 7K0S | 22615 | 2023-07-06 | 2020-09-05 | 4.5 | 4.73 | 4.68 | 4.6 | 0.003 | 0.64 | 2.0 | 0.04 | 13.91 | 0.00 | 2.069 | 9.69 | 0.95 | 7.8 | 92.0 | 0.2 | -0.12 | 0.80 | 0.73 | — | 4.6 | 0.043 | 3.18 | 225.0 | 0.13 | 17.01 | 0.02 | 1.355 | 135.88 | 0.00 | 44.3 | 52.4 | 3.3 | -7.51 | 2.27 | 0.84 | 0.82 | — | 115935 | 12896 | 8 | 0 | 3557 | 0 | 0 | logfile |
✔ | 7TDK | 25832 | 2023-07-07 | 2021-12-31 | 3.8 | 4.07 | 3.85 | 3.8 | 0.004 | 0.87 | 0.0 | 0.04 | 15.75 | 0.01 | 2.210 | 4.97 | 0.46 | 5.7 | 94.1 | 0.1 | -0.20 | 0.85 | 0.77 | 1.07 | 3.8 | 0.051 | 3.21 | 71.0 | 0.14 | 19.99 | 0.02 | 1.573 | 100.23 | 3.61 | 38.4 | 59.1 | 2.5 | -7.48 | 2.34 | 0.89 | 0.86 | 1.15 | 117136 | 12936 | 8 | 0 | 3616 | 0 | 0 | logfile |
✔ | 7K0T | 22616 | 2023-07-06 | 2020-09-05 | 4.3 | 4.52 | 4.29 | 4.2 | 0.003 | 0.65 | 1.0 | 0.04 | 13.80 | 0.00 | 1.909 | 7.65 | 0.63 | 7.5 | 92.4 | 0.2 | -0.19 | 0.84 | 0.76 | — | 4.2 | 0.036 | 2.69 | 59.0 | 0.11 | 15.80 | 0.02 | 1.195 | 109.81 | 0.00 | 43.4 | 55.0 | 1.6 | -7.43 | 1.92 | 0.86 | 0.83 | — | 115905 | 12820 | 8 | 0 | 3608 | 0 | 0 | logfile |
✔ | 7TDG | 25828 | 2023-07-07 | 2021-12-31 | 3.8 | 4.00 | 3.85 | 3.8 | 0.086 | 0.81 | 1.0 | 0.04 | 13.97 | 0.00 | 0.831 | 7.84 | 0.28 | 6.6 | 93.4 | 0.1 | -0.49 | 0.83 | 0.79 | 0.99 | 3.8 | 0.056 | 3.18 | 114.0 | 0.16 | 19.71 | 0.02 | 1.714 | 88.48 | 3.87 | 38.2 | 59.5 | 2.3 | -7.40 | 1.18 | 0.86 | 0.86 | 1.36 | 117345 | 12936 | 8 | 0 | 3624 | 0 | 0 | logfile |
✔ | 7TDJ | 25831 | 2023-07-07 | 2021-12-31 | 3.7 | 3.93 | 3.79 | 3.8 | 0.005 | 0.91 | 0.0 | 0.04 | 15.74 | 0.01 | 2.223 | 5.62 | 0.37 | 6.0 | 93.9 | 0.2 | -0.38 | 0.85 | 0.77 | 1.01 | 3.7 | 0.056 | 3.34 | 152.0 | 0.16 | 20.01 | 0.02 | 1.738 | 94.23 | 2.94 | 37.0 | 60.2 | 2.7 | -7.31 | 1.34 | 0.89 | 0.86 | 1.52 | 117112 | 12932 | 12 | 0 | 3616 | 8 | 0 | logfile |
✔ | 6oDY | 20024 | 2023-07-13 | 2019-03-27 | 3.8 | 3.40 | — | 3.2 | 0.010 | 1.59 | 18.0 | 0.11 | 15.38 | 0.01 | 1.264 | 18.28 | 3.15 | 16.6 | 83.3 | 0.0 | -5.02 | 0.66 | 0.62 | 1.16 | 3.2 | 0.030 | 3.05 | 5.0 | 0.14 | 20.12 | 0.02 | 1.721 | 102.91 | 3.91 | 37.7 | 61.0 | 1.3 | -7.26 | 1.53 | 0.69 | 0.69 | 1.79 | 28116 | 2832 | 6 | 0 | 1326 | 0 | 0 | logfile |
✔ | 7TDH | 25829 | 2023-07-07 | 2021-12-31 | 4.0 | 4.95 | 4.67 | 4.5 | 0.003 | 0.77 | 0.0 | 0.04 | 13.63 | 0.00 | 2.254 | 4.64 | 0.00 | 5.1 | 94.9 | 0.0 | -1.74 | 0.84 | 0.67 | — | 4.5 | 0.030 | 2.65 | 66.0 | 0.11 | 19.67 | 0.02 | 0.888 | 153.73 | 3.43 | 43.9 | 54.5 | 1.5 | -7.26 | 2.44 | 0.88 | 0.83 | — | 117532 | 13060 | 8 | 0 | 3616 | 0 | 0 | logfile |
✔ | 7TDi | 25830 | 2023-07-07 | 2021-12-31 | 3.3 | 3.81 | 3.62 | 3.6 | 0.005 | 0.81 | 0.0 | 0.04 | 16.22 | 0.01 | 2.159 | 4.24 | 0.85 | 4.4 | 95.5 | 0.1 | -0.18 | 0.82 | 0.72 | 0.41 | 3.6 | 0.060 | 3.45 | 153.0 | 0.17 | 19.75 | 0.02 | 1.655 | 78.91 | 3.69 | 33.8 | 63.9 | 2.3 | -7.06 | 1.45 | 0.89 | 0.87 | 1.83 | 117132 | 12936 | 8 | 0 | 3616 | 0 | 0 | logfile |
✔ | 7UMZ | 26610 | 2023-07-05 | 2022-04-08 | 3.09 | 3.37 | 3.21 | 3.3 | 0.004 | 0.87 | 0.0 | 0.04 | 17.35 | 0.01 | 2.198 | 7.00 | 2.38 | 6.1 | 93.3 | 0.6 | -1.01 | 0.68 | 0.70 | 1.58 | 3.3 | 0.060 | 2.98 | 178.0 | 0.19 | 19.49 | 0.02 | 0.810 | 51.66 | 2.96 | 27.0 | 70.3 | 2.8 | -6.90 | 1.64 | 0.75 | 0.86 | 2.31 | 111437 | 12516 | 12 | 0 | 3221 | 8 | 0 | logfile |
✔ | 6ZYD | 11557 | 2023-07-15 | 2020-07-31 | 3.0 | 3.62 | 2.76 | 3.4 | 0.017 | 1.20 | 0.0 | 0.12 | 17.41 | 0.01 | 2.269 | 4.88 | 0.00 | 5.1 | 94.9 | 0.0 | -3.12 | 0.75 | 0.77 | 4.36 | 3.4 | 0.059 | 2.56 | 0.0 | 0.17 | 18.86 | 0.02 | 1.731 | 57.41 | 12.94 | 21.7 | 78.3 | 0.0 | -6.09 | 1.47 | 0.79 | 0.86 | 3.23 | 31423 | 1792 | 14 | 0 | 476 | 0 | 14490 | logfile |
✔ | 6XTB | 10618 | 2023-07-03 | 2020-01-15 | 4.3 | 4.32 | — | 3.9 | 0.006 | 1.17 | 0.0 | 0.07 | 8.68 | 0.00 | 2.369 | 3.00 | 0.00 | 15.6 | 84.4 | 0.0 | -4.66 | 0.32 | 0.43 | — | 4.1 | 0.005 | 1.12 | 0.0 | 0.05 | 9.13 | 0.00 | 2.119 | 10.22 | 0.00 | 25.1 | 74.9 | 0.0 | -5.72 | 2.48 | 0.34 | 0.65 | — | 1161 | 235 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LiJ | 4054 | 2023-07-03 | 2016-07-14 | 4.2 | 3.63 | — | 4.2 | 0.009 | 2.92 | 4.0 | 0.17 | 15.82 | 0.01 | 2.249 | 25.64 | 0.00 | 10.7 | 89.3 | 0.0 | -6.36 | 0.85 | 0.76 | — | 3.8 | 0.005 | 1.18 | 0.0 | 0.04 | 10.31 | 0.00 | 2.148 | 15.12 | 0.00 | 32.0 | 68.0 | 0.0 | -5.66 | 1.48 | 0.86 | 0.78 | — | 761 | 152 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JSH | 22454 | 2023-07-04 | 2020-08-14 | 4.4 | 7.07 | — | 17.0 | 0.001 | 0.20 | 0.0 | 0.02 | 8.81 | 0.00 | 2.581 | 0.00 | 0.00 | 13.1 | 83.7 | 3.2 | -3.27 | 0.49 | 0.25 | — | 5.3 | 0.005 | 1.30 | 0.0 | 0.05 | 13.69 | 0.01 | 1.942 | 27.17 | 0.00 | 31.8 | 67.9 | 0.3 | -5.48 | 6.11 | 0.73 | 0.61 | — | 7916 | 1904 | 8 | 15 | 0 | 0 | 0 | logfile |
✔ | 3JAC | 6343 | 2023-07-08 | 2015-06-05 | 4.8 | 6.42 | — | 9.4 | 0.007 | 1.81 | 3.0 | 0.07 | 10.64 | 0.03 | 1.020 | 57.64 | 4.17 | 5.0 | 90.3 | 4.8 | 1.36 | 0.42 | 0.40 | — | 9.1 | 0.012 | 1.69 | 0.0 | 0.06 | 13.69 | 0.01 | 1.923 | 77.11 | 0.00 | 27.1 | 71.7 | 1.2 | -5.31 | 3.69 | 0.54 | 0.61 | — | 15741 | 1716 | 3 | 0 | 1038 | 0 | 0 | logfile |
✔ | 6SHS | 10204 | 2023-07-04 | 2019-08-08 | 4.4 | 4.36 | — | 4.3 | 0.009 | 1.02 | 0.0 | 0.06 | 12.04 | 0.00 | 2.341 | 25.68 | 0.00 | 21.1 | 78.9 | 0.0 | -5.87 | 0.69 | 0.62 | — | 4.4 | 0.002 | 0.64 | 0.0 | 0.05 | 12.90 | 0.00 | 2.248 | 6.00 | 0.00 | 16.4 | 83.6 | 0.0 | -5.26 | 1.68 | 0.73 | 0.71 | — | 7068 | 480 | 12 | 0 | 0 | 0 | 3408 | logfile |
✔ | 7YR6 | 34047 | 2023-07-03 | 2022-08-09 | 4.8 | 5.13 | 4.65 | 4.7 | 0.004 | 0.88 | 0.0 | 0.05 | 20.67 | 0.00 | 2.291 | 7.11 | 3.30 | 15.1 | 84.9 | 0.0 | -5.39 | 0.81 | 0.74 | — | 4.7 | 0.006 | 0.85 | 0.0 | 0.05 | 21.69 | 0.01 | 2.063 | 46.62 | 0.00 | 26.4 | 73.6 | 0.0 | -5.22 | 0.82 | 0.83 | 0.81 | — | 4248 | 220 | 5 | 118 | 0 | 0 | 0 | logfile |
✔ | 5G2X | 3331 | 2023-07-09 | 2016-04-16 | 3.8 | 3.49 | — | 3.4 | 0.001 | 0.32 | 0.0 | 0.02 | 11.56 | 0.00 | 2.219 | 4.36 | 0.45 | 19.7 | 74.4 | 5.9 | -5.72 | 0.51 | 0.30 | -0.09 | 3.3 | 0.005 | 0.87 | 0.0 | 0.04 | 19.17 | 0.01 | 1.949 | 36.81 | 0.45 | 21.6 | 77.1 | 1.3 | -5.19 | 1.94 | 0.80 | 0.66 | 0.50 | 19072 | 487 | 3 | 704 | 0 | 0 | 0 | logfile |