Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LQF	23484	2021-08-07	2021-02-13	3.8	3.13	—	4.0	0.007	0.93	0.0	0.05	19.18	0.00	1.403	22.67	2.08	0.0	100.0	0.0	-4.77	0.60	0.78	4.63	3.2	0.152	6.81	286.0	0.42	26.23	0.03	1.594	202.58	4.95	66.4	28.9	4.7	-9.57	2.09	0.70	0.86	2.64	5440	512	64	0	0	0	0	logfile
✔	7LQE	23483	2021-08-07	2021-02-13	3.4	3.06	—	3.4	0.008	0.86	0.0	0.05	20.97	0.00	1.410	23.04	14.58	0.0	100.0	0.0	-5.94	0.57	0.80	5.06	3.1	0.149	5.53	286.0	0.38	25.78	0.02	1.599	128.98	3.47	58.0	40.3	1.7	-8.85	1.67	0.66	0.89	2.22	6120	576	72	0	0	0	0	logfile
✔	6BWi	7299	2021-08-09	2017-12-15	3.7	3.76	—	3.7	0.037	2.68	4.0	0.39	15.54	0.01	1.745	22.45	1.36	8.1	91.5	0.4	-5.08	0.67	0.73	2.06	3.7	0.088	4.99	117.0	0.28	22.16	0.03	1.613	114.48	3.18	45.5	47.5	7.0	-8.64	3.46	0.80	0.86	1.62	23491	2484	8	0	813	0	0	logfile
✔	7LQG	23485	2021-08-08	2021-02-13	3.4	3.13	—	3.3	0.008	0.86	0.0	0.05	20.97	0.00	1.410	30.83	14.58	0.0	100.0	0.0	-5.94	0.61	0.81	5.57	3.1	0.108	4.63	287.0	0.29	24.33	0.02	1.745	113.51	4.05	36.5	63.5	0.0	-7.93	1.61	0.67	0.87	3.83	12240	1152	144	0	0	0	0	logfile
✔	7LQi	23487	2021-08-07	2021-02-13	3.5	3.92	—	3.9	0.008	0.80	0.0	0.05	18.09	0.00	1.411	22.72	5.00	0.0	100.0	0.0	-3.42	0.62	0.79	4.80	3.8	0.051	3.56	13.0	0.15	22.93	0.01	1.796	112.61	3.67	51.2	48.0	0.8	-7.92	1.63	0.65	0.84	2.47	8500	800	100	0	0	0	0	logfile
✔	6S8F	10120	2021-08-10	2019-07-09	4.0	4.88	—	3.9	0.007	1.25	0.0	0.06	11.73	0.01	1.859	6.71	0.80	9.6	90.3	0.1	-4.38	0.88	0.77	—	3.8	0.042	2.94	48.0	0.11	18.05	0.02	1.567	176.27	4.03	53.9	43.6	2.5	-7.87	2.41	0.90	0.88	—	33664	3530	4	0	1616	0	0	logfile
✔	7LQH	23486	2021-08-08	2021-02-13	3.4	3.12	—	3.4	0.008	0.86	0.0	0.05	20.97	0.00	1.410	30.96	14.58	0.0	100.0	0.0	-5.94	0.60	0.81	5.83	3.2	0.109	4.56	293.0	0.29	24.86	0.02	1.701	107.76	4.51	39.2	60.6	0.2	-7.86	1.63	0.67	0.87	3.29	12240	1152	144	0	0	0	0	logfile
✔	3J9L	2871	2021-08-09	2015-02-04	4.0	4.10	—	4.0	0.022	1.96	105.0	0.12	19.47	0.01	1.058	80.55	27.30	10.5	88.6	0.9	-4.09	0.66	0.68	—	4.0	0.048	3.14	45.0	0.12	19.52	0.02	1.798	94.55	3.21	39.7	58.2	2.1	-7.71	2.97	0.73	0.81	—	112951	8688	31	0	8320	0	0	logfile
✔	6oDY	20024	2021-08-10	2019-03-27	3.8	3.40	—	3.2	0.010	1.59	18.0	0.11	15.38	0.01	1.264	18.14	3.15	16.6	83.3	0.0	-5.02	0.66	0.62	1.16	3.2	0.030	3.06	5.0	0.14	20.14	0.02	1.750	100.37	2.98	38.1	60.6	1.3	-7.27	1.54	0.68	0.68	1.68	28116	2832	6	0	1326	0	0	logfile
✔	7DA4	30622	2021-08-07	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	77.78	0.00	50.0	50.0	0.0	-8.65	0.39	0.65	—	7.1	0.004	1.01	0.0	0.04	12.09	0.00	2.235	22.22	0.00	30.0	70.0	0.0	-6.55	3.69	0.42	0.65	—	507	66	3	0	0	0	0	logfile
✔	6XTB	10618	2021-08-07	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.006	1.33	0.0	0.05	10.83	0.01	2.037	19.23	0.00	34.6	65.4	0.0	-6.29	3.26	0.35	0.66	—	1161	235	1	0	0	0	0	logfile
✔	6ZRQ	11382	2021-08-07	2020-07-14	3.9	4.06	—	4.2	0.014	1.20	0.0	0.05	12.20	0.00	2.597	20.13	0.00	5.0	95.0	0.0	-4.20	0.64	0.62	3.62	4.2	0.003	0.74	0.0	0.04	13.08	0.00	2.142	20.64	2.31	18.3	81.7	0.0	-6.23	2.16	0.70	0.77	2.54	3816	276	12	0	0	0	1776	logfile
✔	6ZYD	11557	2021-08-10	2020-07-31	3.0	3.62	2.76	3.4	0.016	1.10	0.0	0.12	15.96	0.01	2.269	4.82	0.00	5.1	94.9	0.0	-3.12	0.75	0.77	4.36	3.4	0.057	2.38	0.0	0.17	18.71	0.02	1.745	52.32	13.32	21.7	78.2	0.1	-6.11	1.48	0.79	0.85	3.38	31423	1792	14	0	476	0	14490	logfile
✔	6ZRF	11380	2021-08-07	2020-07-13	3.6	3.66	1.96	3.6	0.014	1.03	0.0	0.05	13.43	0.00	1.993	39.08	0.00	4.9	95.1	0.0	-6.22	0.67	0.79	1.84	3.7	0.007	0.86	0.0	0.05	14.96	0.00	2.128	29.34	0.42	15.2	84.8	0.0	-5.99	0.53	0.71	0.82	3.09	2220	300	12	0	0	0	0	logfile
✔	6RiB	4887	2021-08-08	2019-04-23	4.2	3.32	—	4.0	0.008	1.12	0.0	0.06	18.48	0.00	0.563	15.47	9.09	10.1	89.9	0.0	-5.68	0.73	0.66	—	3.9	0.011	1.29	0.0	0.06	14.63	0.01	2.071	31.15	0.00	23.5	76.5	0.0	-5.95	1.65	0.78	0.74	—	16368	2222	22	0	0	0	0	logfile
✔	7JSH	22454	2021-08-07	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.007	1.51	0.0	0.06	14.89	0.01	1.900	42.53	0.00	35.4	64.4	0.2	-5.88	8.07	0.79	0.73	—	7916	1904	8	15	0	0	0	logfile
✔	7BX7	30235	2021-08-07	2020-04-17	2.8	2.94	—	2.9	0.009	0.84	0.0	0.04	12.96	0.00	2.228	15.34	0.00	9.3	90.7	0.0	-5.83	0.40	0.78	6.36	2.9	0.004	0.60	0.0	0.04	13.82	0.00	2.170	11.28	2.30	8.1	91.9	0.0	-5.48	1.13	0.40	0.78	6.34	1896	270	6	0	0	0	0	logfile
✔	5LiJ	4054	2021-08-07	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	22.98	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.004	1.11	0.0	0.04	9.65	0.00	2.219	12.48	0.00	30.7	69.3	0.0	-5.42	1.52	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✔	7KWZ	23059	2021-08-07	2020-12-02	3.2	3.41	—	3.4	0.006	0.80	0.0	0.05	12.48	0.00	2.271	12.59	0.00	7.3	92.7	0.0	-5.51	0.47	0.81	4.47	3.4	0.005	0.88	0.0	0.04	15.06	0.01	2.118	15.76	0.23	10.4	89.6	0.0	-5.39	1.05	0.50	0.84	4.14	4695	695	5	0	0	0	0	logfile
✔	6oSM	20186	2021-08-07	2019-05-01	3.4	3.31	—	3.4	0.012	1.45	0.0	0.09	14.06	0.00	2.183	28.91	14.88	34.5	65.5	0.0	-5.34	0.46	0.74	2.68	3.4	0.007	1.22	0.0	0.07	15.32	0.00	2.228	25.45	1.46	28.3	71.7	0.0	-5.24	3.40	0.45	0.75	2.88	4100	600	10	0	0	0	0	logfile

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