Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LQF	23484	2022-05-12	2021-02-13	3.8	3.13	—	4.0	0.016	1.46	0.0	0.03	18.37	0.00	2.258	22.81	2.08	0.0	100.0	0.0	-4.77	0.59	0.78	4.63	3.2	0.155	6.38	244.0	0.42	26.01	0.03	1.685	217.36	4.43	66.8	30.1	3.1	-9.48	1.76	0.69	0.86	2.76	5376	512	64	0	0	0	0	logfile
✔	6BWi	7299	2022-05-15	2017-12-15	3.7	3.76	—	3.7	0.011	1.39	4.0	0.09	12.08	0.01	1.745	22.63	1.36	8.1	91.5	0.4	-5.08	0.67	0.73	2.06	3.7	0.089	4.99	120.0	0.27	21.86	0.03	1.602	113.20	4.82	45.7	47.7	6.6	-8.68	2.59	0.80	0.86	1.64	23491	2484	8	0	813	0	0	logfile
✔	7LQE	23483	2022-05-12	2021-02-13	3.4	3.06	—	3.4	0.016	1.42	0.0	0.04	20.72	0.00	2.423	23.27	14.58	0.0	100.0	0.0	-5.94	0.57	0.80	5.06	3.1	0.150	5.21	243.0	0.38	25.21	0.02	1.751	134.26	5.09	58.0	40.6	1.4	-8.59	2.02	0.65	0.89	2.15	6048	576	72	0	0	0	0	logfile
✔	7LQH	23486	2022-05-13	2021-02-13	3.4	3.12	—	3.4	0.016	1.42	0.0	0.04	20.72	0.00	2.098	31.15	14.58	0.0	100.0	0.0	-5.94	0.59	0.80	5.83	3.2	0.111	4.26	186.0	0.31	24.05	0.02	1.786	114.19	5.21	39.1	60.6	0.3	-8.00	3.50	0.66	0.87	3.22	12096	1152	144	0	0	0	0	logfile
✔	7LQG	23485	2022-05-13	2021-02-13	3.4	3.13	—	3.3	0.016	1.42	0.0	0.04	20.72	0.00	1.842	31.02	14.58	0.0	100.0	0.0	-5.94	0.61	0.81	5.57	3.1	0.110	4.34	179.0	0.30	23.65	0.02	1.811	119.39	4.40	35.9	64.1	0.0	-7.99	1.64	0.67	0.86	3.88	12096	1152	144	0	0	0	0	logfile
✔	6S8F	10120	2022-05-16	2019-07-09	4.0	4.88	—	3.9	0.007	1.26	0.0	0.06	11.68	0.01	1.859	6.74	0.80	9.6	90.3	0.1	-4.38	0.88	0.77	—	3.9	0.042	2.94	54.0	0.11	17.89	0.02	1.493	187.11	4.56	53.2	44.4	2.4	-7.94	2.39	0.90	0.88	—	33664	3530	4	0	1616	0	0	logfile
✔	3J9L	2871	2022-05-13	2015-02-04	4.0	4.10	—	4.0	0.022	1.96	105.0	0.12	19.47	0.01	1.058	81.48	27.30	10.5	88.6	0.9	-4.09	0.66	0.68	—	4.0	0.046	3.09	53.0	0.12	19.38	0.02	1.821	99.17	4.04	40.2	57.9	1.9	-7.58	2.86	0.70	0.77	—	112951	8688	31	0	8320	0	0	logfile
✔	7K0S	22615	2022-05-14	2020-09-05	4.5	4.73	4.68	4.6	0.003	0.64	2.0	0.04	13.93	0.00	2.069	9.77	0.95	7.8	92.0	0.2	-0.08	0.80	0.73	—	4.6	0.043	3.18	233.0	0.13	17.11	0.02	1.373	136.09	0.04	44.5	52.1	3.4	-7.55	2.27	0.84	0.82	—	116057	12911	8	0	3558	0	0	logfile
✔	7TDK	25832	2022-05-14	2021-12-31	3.8	4.07	3.86	3.8	0.004	0.87	0.0	0.04	15.75	0.01	2.210	5.03	0.46	5.7	94.1	0.1	-0.20	0.85	0.77	1.07	3.8	0.051	3.20	78.0	0.14	20.02	0.02	1.611	99.59	3.30	38.3	59.2	2.5	-7.47	2.34	0.89	0.86	1.19	117136	12936	8	0	3616	0	0	logfile
✔	7K0T	22616	2022-05-14	2020-09-05	4.3	4.52	4.28	4.2	0.003	0.64	1.0	0.04	13.78	0.00	2.133	7.56	0.59	7.4	92.4	0.2	-0.12	0.84	0.76	—	4.2	0.036	2.69	59.0	0.11	15.82	0.02	1.138	110.30	0.01	43.2	55.3	1.5	-7.43	2.67	0.86	0.83	—	115288	12743	8	0	3608	0	0	logfile
✔	7TDG	25828	2022-05-14	2021-12-31	3.8	4.00	3.85	3.8	0.086	0.81	1.0	0.04	13.97	0.00	0.831	7.90	0.28	6.6	93.4	0.1	-0.49	0.83	0.79	0.99	3.8	0.056	3.18	107.0	0.16	19.74	0.02	1.713	89.26	3.10	38.3	59.4	2.2	-7.41	1.18	0.86	0.86	1.27	117345	12936	8	0	3624	0	0	logfile
✔	7TDJ	25831	2022-05-14	2021-12-31	3.7	3.93	3.78	3.8	0.005	0.91	0.0	0.04	15.74	0.01	2.223	5.73	0.37	6.0	93.9	0.2	-0.38	0.85	0.77	1.01	3.7	0.056	3.36	160.0	0.16	19.95	0.02	1.710	95.69	0.36	36.5	60.8	2.7	-7.28	1.29	0.89	0.86	1.40	117112	12932	12	0	3616	8	0	logfile
✔	7TDH	25829	2022-05-14	2021-12-31	4.0	4.95	4.67	4.5	0.003	0.77	0.0	0.04	13.63	0.00	2.254	4.69	0.00	5.1	94.9	0.0	-1.74	0.84	0.67	—	4.5	0.030	2.65	63.0	0.11	19.57	0.02	0.880	152.84	3.28	44.1	54.4	1.6	-7.26	2.44	0.88	0.83	—	117532	13060	8	0	3616	0	0	logfile
✔	6oDY	20024	2022-05-15	2019-03-27	3.8	3.40	—	3.2	0.010	1.59	18.0	0.11	15.38	0.01	1.264	18.40	3.15	16.6	83.3	0.0	-5.02	0.66	0.62	1.16	3.2	0.030	3.05	5.0	0.14	20.16	0.02	1.727	102.93	4.00	38.1	60.5	1.3	-7.21	1.53	0.69	0.69	1.76	28116	2832	6	0	1326	0	0	logfile
✔	7LQi	23487	2022-05-12	2021-02-13	3.5	3.92	—	3.9	0.016	1.40	0.0	0.03	20.42	0.00	2.242	22.86	5.00	0.0	100.0	0.0	-3.42	0.62	0.78	4.80	3.9	0.051	2.84	5.0	0.14	22.95	0.01	1.918	120.83	3.83	46.2	53.8	0.0	-7.03	1.54	0.65	0.83	2.47	8400	800	100	0	0	0	0	logfile
✔	7M65	23689	2022-05-12	2021-03-25	4.1	4.11	—	4.3	0.009	1.40	0.0	0.10	12.05	0.00	2.392	33.63	0.00	17.6	82.4	0.0	-6.09	0.52	0.73	—	4.2	0.005	0.96	0.0	0.05	12.00	0.00	2.126	25.73	0.00	17.3	82.7	0.0	-6.33	4.44	0.52	0.73	—	2025	275	10	0	5	0	0	logfile
✔	6ZYD	11557	2022-05-16	2020-07-31	3.0	3.62	2.76	3.4	0.017	1.20	0.0	0.12	17.41	0.01	2.269	4.88	0.00	5.1	94.9	0.0	-3.12	0.75	0.77	4.36	3.4	0.059	2.56	0.0	0.17	18.86	0.02	1.730	57.41	12.94	21.7	78.3	0.0	-6.10	1.47	0.79	0.85	3.23	31423	1792	14	0	476	0	14490	logfile
✔	7DWV	30887	2022-05-12	2021-01-18	3.07	2.95	—	3.6	0.007	0.80	0.0	0.06	14.69	0.00	2.258	17.63	0.00	26.8	73.2	0.0	-7.45	0.41	0.75	4.09	4.1	0.004	0.73	0.0	0.05	17.17	0.00	2.189	19.08	0.00	23.2	76.8	0.0	-5.96	1.50	0.41	0.75	2.79	2064	258	6	0	0	0	0	logfile
✔	7DA4	30622	2022-05-12	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	79.80	0.00	50.0	50.0	0.0	-8.65	0.39	0.66	—	4.3	0.004	0.95	0.0	0.04	11.56	0.00	2.266	19.19	0.00	18.3	81.7	0.0	-5.96	3.11	0.36	0.58	—	507	66	3	0	0	0	0	logfile
✔	6ZRQ	11382	2022-05-12	2020-07-14	3.9	4.06	—	4.2	0.014	1.20	0.0	0.05	12.20	0.00	2.597	20.13	0.00	5.0	95.0	0.0	-4.20	0.64	0.62	3.62	4.2	0.003	0.70	0.0	0.04	12.79	0.00	2.180	20.13	0.00	15.4	84.6	0.0	-5.93	2.13	0.70	0.77	2.95	3816	276	12	0	0	0	1776	logfile

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