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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7LQF | 23484 | 2022-05-12 | 2021-02-13 | 3.8 | 3.13 | — | 4.0 | 0.016 | 1.46 | 0.0 | 0.03 | 18.37 | 0.00 | 2.258 | 22.81 | 2.08 | 0.0 | 100.0 | 0.0 | -4.77 | 0.59 | 0.78 | 4.63 | 3.2 | 0.155 | 6.38 | 244.0 | 0.42 | 26.01 | 0.03 | 1.685 | 217.36 | 4.43 | 66.8 | 30.1 | 3.1 | -9.48 | 1.76 | 0.69 | 0.86 | 2.76 | 5376 | 512 | 64 | 0 | 0 | 0 | 0 | logfile |
✔ | 6BWi | 7299 | 2022-05-15 | 2017-12-15 | 3.7 | 3.76 | — | 3.7 | 0.011 | 1.39 | 4.0 | 0.09 | 12.08 | 0.01 | 1.745 | 22.63 | 1.36 | 8.1 | 91.5 | 0.4 | -5.08 | 0.67 | 0.73 | 2.06 | 3.7 | 0.089 | 4.99 | 120.0 | 0.27 | 21.86 | 0.03 | 1.602 | 113.20 | 4.82 | 45.7 | 47.7 | 6.6 | -8.68 | 2.59 | 0.80 | 0.86 | 1.64 | 23491 | 2484 | 8 | 0 | 813 | 0 | 0 | logfile |
✔ | 7LQE | 23483 | 2022-05-12 | 2021-02-13 | 3.4 | 3.06 | — | 3.4 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 2.423 | 23.27 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.57 | 0.80 | 5.06 | 3.1 | 0.150 | 5.21 | 243.0 | 0.38 | 25.21 | 0.02 | 1.751 | 134.26 | 5.09 | 58.0 | 40.6 | 1.4 | -8.59 | 2.02 | 0.65 | 0.89 | 2.15 | 6048 | 576 | 72 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LQH | 23486 | 2022-05-13 | 2021-02-13 | 3.4 | 3.12 | — | 3.4 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 2.098 | 31.15 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.59 | 0.80 | 5.83 | 3.2 | 0.111 | 4.26 | 186.0 | 0.31 | 24.05 | 0.02 | 1.786 | 114.19 | 5.21 | 39.1 | 60.6 | 0.3 | -8.00 | 3.50 | 0.66 | 0.87 | 3.22 | 12096 | 1152 | 144 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LQG | 23485 | 2022-05-13 | 2021-02-13 | 3.4 | 3.13 | — | 3.3 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 1.842 | 31.02 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.61 | 0.81 | 5.57 | 3.1 | 0.110 | 4.34 | 179.0 | 0.30 | 23.65 | 0.02 | 1.811 | 119.39 | 4.40 | 35.9 | 64.1 | 0.0 | -7.99 | 1.64 | 0.67 | 0.86 | 3.88 | 12096 | 1152 | 144 | 0 | 0 | 0 | 0 | logfile |
✔ | 6S8F | 10120 | 2022-05-16 | 2019-07-09 | 4.0 | 4.88 | — | 3.9 | 0.007 | 1.26 | 0.0 | 0.06 | 11.68 | 0.01 | 1.859 | 6.74 | 0.80 | 9.6 | 90.3 | 0.1 | -4.38 | 0.88 | 0.77 | — | 3.9 | 0.042 | 2.94 | 54.0 | 0.11 | 17.89 | 0.02 | 1.493 | 187.11 | 4.56 | 53.2 | 44.4 | 2.4 | -7.94 | 2.39 | 0.90 | 0.88 | — | 33664 | 3530 | 4 | 0 | 1616 | 0 | 0 | logfile |
✔ | 3J9L | 2871 | 2022-05-13 | 2015-02-04 | 4.0 | 4.10 | — | 4.0 | 0.022 | 1.96 | 105.0 | 0.12 | 19.47 | 0.01 | 1.058 | 81.48 | 27.30 | 10.5 | 88.6 | 0.9 | -4.09 | 0.66 | 0.68 | — | 4.0 | 0.046 | 3.09 | 53.0 | 0.12 | 19.38 | 0.02 | 1.821 | 99.17 | 4.04 | 40.2 | 57.9 | 1.9 | -7.58 | 2.86 | 0.70 | 0.77 | — | 112951 | 8688 | 31 | 0 | 8320 | 0 | 0 | logfile |
✔ | 7K0S | 22615 | 2022-05-14 | 2020-09-05 | 4.5 | 4.73 | 4.68 | 4.6 | 0.003 | 0.64 | 2.0 | 0.04 | 13.93 | 0.00 | 2.069 | 9.77 | 0.95 | 7.8 | 92.0 | 0.2 | -0.08 | 0.80 | 0.73 | — | 4.6 | 0.043 | 3.18 | 233.0 | 0.13 | 17.11 | 0.02 | 1.373 | 136.09 | 0.04 | 44.5 | 52.1 | 3.4 | -7.55 | 2.27 | 0.84 | 0.82 | — | 116057 | 12911 | 8 | 0 | 3558 | 0 | 0 | logfile |
✔ | 7TDK | 25832 | 2022-05-14 | 2021-12-31 | 3.8 | 4.07 | 3.86 | 3.8 | 0.004 | 0.87 | 0.0 | 0.04 | 15.75 | 0.01 | 2.210 | 5.03 | 0.46 | 5.7 | 94.1 | 0.1 | -0.20 | 0.85 | 0.77 | 1.07 | 3.8 | 0.051 | 3.20 | 78.0 | 0.14 | 20.02 | 0.02 | 1.611 | 99.59 | 3.30 | 38.3 | 59.2 | 2.5 | -7.47 | 2.34 | 0.89 | 0.86 | 1.19 | 117136 | 12936 | 8 | 0 | 3616 | 0 | 0 | logfile |
✔ | 7K0T | 22616 | 2022-05-14 | 2020-09-05 | 4.3 | 4.52 | 4.28 | 4.2 | 0.003 | 0.64 | 1.0 | 0.04 | 13.78 | 0.00 | 2.133 | 7.56 | 0.59 | 7.4 | 92.4 | 0.2 | -0.12 | 0.84 | 0.76 | — | 4.2 | 0.036 | 2.69 | 59.0 | 0.11 | 15.82 | 0.02 | 1.138 | 110.30 | 0.01 | 43.2 | 55.3 | 1.5 | -7.43 | 2.67 | 0.86 | 0.83 | — | 115288 | 12743 | 8 | 0 | 3608 | 0 | 0 | logfile |
✔ | 7TDG | 25828 | 2022-05-14 | 2021-12-31 | 3.8 | 4.00 | 3.85 | 3.8 | 0.086 | 0.81 | 1.0 | 0.04 | 13.97 | 0.00 | 0.831 | 7.90 | 0.28 | 6.6 | 93.4 | 0.1 | -0.49 | 0.83 | 0.79 | 0.99 | 3.8 | 0.056 | 3.18 | 107.0 | 0.16 | 19.74 | 0.02 | 1.713 | 89.26 | 3.10 | 38.3 | 59.4 | 2.2 | -7.41 | 1.18 | 0.86 | 0.86 | 1.27 | 117345 | 12936 | 8 | 0 | 3624 | 0 | 0 | logfile |
✔ | 7TDJ | 25831 | 2022-05-14 | 2021-12-31 | 3.7 | 3.93 | 3.78 | 3.8 | 0.005 | 0.91 | 0.0 | 0.04 | 15.74 | 0.01 | 2.223 | 5.73 | 0.37 | 6.0 | 93.9 | 0.2 | -0.38 | 0.85 | 0.77 | 1.01 | 3.7 | 0.056 | 3.36 | 160.0 | 0.16 | 19.95 | 0.02 | 1.710 | 95.69 | 0.36 | 36.5 | 60.8 | 2.7 | -7.28 | 1.29 | 0.89 | 0.86 | 1.40 | 117112 | 12932 | 12 | 0 | 3616 | 8 | 0 | logfile |
✔ | 7TDH | 25829 | 2022-05-14 | 2021-12-31 | 4.0 | 4.95 | 4.67 | 4.5 | 0.003 | 0.77 | 0.0 | 0.04 | 13.63 | 0.00 | 2.254 | 4.69 | 0.00 | 5.1 | 94.9 | 0.0 | -1.74 | 0.84 | 0.67 | — | 4.5 | 0.030 | 2.65 | 63.0 | 0.11 | 19.57 | 0.02 | 0.880 | 152.84 | 3.28 | 44.1 | 54.4 | 1.6 | -7.26 | 2.44 | 0.88 | 0.83 | — | 117532 | 13060 | 8 | 0 | 3616 | 0 | 0 | logfile |
✔ | 6oDY | 20024 | 2022-05-15 | 2019-03-27 | 3.8 | 3.40 | — | 3.2 | 0.010 | 1.59 | 18.0 | 0.11 | 15.38 | 0.01 | 1.264 | 18.40 | 3.15 | 16.6 | 83.3 | 0.0 | -5.02 | 0.66 | 0.62 | 1.16 | 3.2 | 0.030 | 3.05 | 5.0 | 0.14 | 20.16 | 0.02 | 1.727 | 102.93 | 4.00 | 38.1 | 60.5 | 1.3 | -7.21 | 1.53 | 0.69 | 0.69 | 1.76 | 28116 | 2832 | 6 | 0 | 1326 | 0 | 0 | logfile |
✔ | 7LQi | 23487 | 2022-05-12 | 2021-02-13 | 3.5 | 3.92 | — | 3.9 | 0.016 | 1.40 | 0.0 | 0.03 | 20.42 | 0.00 | 2.242 | 22.86 | 5.00 | 0.0 | 100.0 | 0.0 | -3.42 | 0.62 | 0.78 | 4.80 | 3.9 | 0.051 | 2.84 | 5.0 | 0.14 | 22.95 | 0.01 | 1.918 | 120.83 | 3.83 | 46.2 | 53.8 | 0.0 | -7.03 | 1.54 | 0.65 | 0.83 | 2.47 | 8400 | 800 | 100 | 0 | 0 | 0 | 0 | logfile |
✔ | 7M65 | 23689 | 2022-05-12 | 2021-03-25 | 4.1 | 4.11 | — | 4.3 | 0.009 | 1.40 | 0.0 | 0.10 | 12.05 | 0.00 | 2.392 | 33.63 | 0.00 | 17.6 | 82.4 | 0.0 | -6.09 | 0.52 | 0.73 | — | 4.2 | 0.005 | 0.96 | 0.0 | 0.05 | 12.00 | 0.00 | 2.126 | 25.73 | 0.00 | 17.3 | 82.7 | 0.0 | -6.33 | 4.44 | 0.52 | 0.73 | — | 2025 | 275 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 6ZYD | 11557 | 2022-05-16 | 2020-07-31 | 3.0 | 3.62 | 2.76 | 3.4 | 0.017 | 1.20 | 0.0 | 0.12 | 17.41 | 0.01 | 2.269 | 4.88 | 0.00 | 5.1 | 94.9 | 0.0 | -3.12 | 0.75 | 0.77 | 4.36 | 3.4 | 0.059 | 2.56 | 0.0 | 0.17 | 18.86 | 0.02 | 1.730 | 57.41 | 12.94 | 21.7 | 78.3 | 0.0 | -6.10 | 1.47 | 0.79 | 0.85 | 3.23 | 31423 | 1792 | 14 | 0 | 476 | 0 | 14490 | logfile |
✔ | 7DWV | 30887 | 2022-05-12 | 2021-01-18 | 3.07 | 2.95 | — | 3.6 | 0.007 | 0.80 | 0.0 | 0.06 | 14.69 | 0.00 | 2.258 | 17.63 | 0.00 | 26.8 | 73.2 | 0.0 | -7.45 | 0.41 | 0.75 | 4.09 | 4.1 | 0.004 | 0.73 | 0.0 | 0.05 | 17.17 | 0.00 | 2.189 | 19.08 | 0.00 | 23.2 | 76.8 | 0.0 | -5.96 | 1.50 | 0.41 | 0.75 | 2.79 | 2064 | 258 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DA4 | 30622 | 2022-05-12 | 2020-10-14 | 4.24 | 3.75 | — | 4.2 | 0.010 | 1.54 | 0.0 | 0.08 | 17.16 | 0.01 | 2.245 | 79.80 | 0.00 | 50.0 | 50.0 | 0.0 | -8.65 | 0.39 | 0.66 | — | 4.3 | 0.004 | 0.95 | 0.0 | 0.04 | 11.56 | 0.00 | 2.266 | 19.19 | 0.00 | 18.3 | 81.7 | 0.0 | -5.96 | 3.11 | 0.36 | 0.58 | — | 507 | 66 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZRQ | 11382 | 2022-05-12 | 2020-07-14 | 3.9 | 4.06 | — | 4.2 | 0.014 | 1.20 | 0.0 | 0.05 | 12.20 | 0.00 | 2.597 | 20.13 | 0.00 | 5.0 | 95.0 | 0.0 | -4.20 | 0.64 | 0.62 | 3.62 | 4.2 | 0.003 | 0.70 | 0.0 | 0.04 | 12.79 | 0.00 | 2.180 | 20.13 | 0.00 | 15.4 | 84.6 | 0.0 | -5.93 | 2.13 | 0.70 | 0.77 | 2.95 | 3816 | 276 | 12 | 0 | 0 | 0 | 1776 | logfile |