Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6BWi	7299	2023-07-11	2017-12-15	3.7	3.76	—	3.7	0.011	1.39	4.0	0.09	12.09	0.01	1.745	22.56	1.36	8.1	91.5	0.4	-5.08	0.67	0.73	2.06	3.7	0.089	4.99	124.0	0.27	21.79	0.03	1.600	112.56	5.62	43.9	49.5	6.5	-8.57	2.58	0.80	0.86	2.01	23491	2484	8	0	813	0	0	logfile
✔	6S8F	10120	2023-07-15	2019-07-09	4.0	4.88	—	3.9	0.007	1.26	0.0	0.06	11.68	0.01	1.859	6.71	0.80	9.6	90.3	0.1	-4.38	0.88	0.77	—	3.9	0.042	2.95	51.0	0.11	17.89	0.02	1.488	187.53	3.85	53.1	44.5	2.4	-7.96	2.39	0.90	0.88	—	33664	3530	4	0	1616	0	0	logfile
✔	3J9L	2871	2023-07-05	2015-02-04	4.0	4.10	—	4.0	0.022	1.96	105.0	0.12	19.47	0.01	1.058	81.48	27.30	10.5	88.6	0.9	-4.09	0.66	0.68	—	4.0	0.048	3.15	43.0	0.12	19.35	0.02	1.814	99.41	4.32	39.9	58.2	1.9	-7.71	2.86	0.73	0.81	—	112951	8688	31	0	8320	0	0	logfile
✔	7K0S	22615	2023-07-06	2020-09-05	4.5	4.73	4.68	4.6	0.003	0.64	2.0	0.04	13.91	0.00	2.069	9.69	0.95	7.8	92.0	0.2	-0.12	0.80	0.73	—	4.6	0.043	3.18	225.0	0.13	17.01	0.02	1.355	135.88	0.00	44.3	52.4	3.3	-7.51	2.27	0.84	0.82	—	115935	12896	8	0	3557	0	0	logfile
✔	7TDK	25832	2023-07-07	2021-12-31	3.8	4.07	3.85	3.8	0.004	0.87	0.0	0.04	15.75	0.01	2.210	4.97	0.46	5.7	94.1	0.1	-0.20	0.85	0.77	1.07	3.8	0.051	3.21	71.0	0.14	19.99	0.02	1.573	100.23	3.61	38.4	59.1	2.5	-7.48	2.34	0.89	0.86	1.15	117136	12936	8	0	3616	0	0	logfile
✔	7K0T	22616	2023-07-06	2020-09-05	4.3	4.52	4.29	4.2	0.003	0.65	1.0	0.04	13.80	0.00	1.909	7.65	0.63	7.5	92.4	0.2	-0.19	0.84	0.76	—	4.2	0.036	2.69	59.0	0.11	15.80	0.02	1.195	109.81	0.00	43.4	55.0	1.6	-7.43	1.92	0.86	0.83	—	115905	12820	8	0	3608	0	0	logfile
✔	7TDG	25828	2023-07-07	2021-12-31	3.8	4.00	3.85	3.8	0.086	0.81	1.0	0.04	13.97	0.00	0.831	7.84	0.28	6.6	93.4	0.1	-0.49	0.83	0.79	0.99	3.8	0.056	3.18	114.0	0.16	19.71	0.02	1.714	88.48	3.87	38.2	59.5	2.3	-7.40	1.18	0.86	0.86	1.36	117345	12936	8	0	3624	0	0	logfile
✔	7TDJ	25831	2023-07-07	2021-12-31	3.7	3.93	3.79	3.8	0.005	0.91	0.0	0.04	15.74	0.01	2.223	5.62	0.37	6.0	93.9	0.2	-0.38	0.85	0.77	1.01	3.7	0.056	3.34	152.0	0.16	20.01	0.02	1.738	94.23	2.94	37.0	60.2	2.7	-7.31	1.34	0.89	0.86	1.52	117112	12932	12	0	3616	8	0	logfile
✔	6oDY	20024	2023-07-13	2019-03-27	3.8	3.40	—	3.2	0.010	1.59	18.0	0.11	15.38	0.01	1.264	18.28	3.15	16.6	83.3	0.0	-5.02	0.66	0.62	1.16	3.2	0.030	3.05	5.0	0.14	20.12	0.02	1.721	102.91	3.91	37.7	61.0	1.3	-7.26	1.53	0.69	0.69	1.79	28116	2832	6	0	1326	0	0	logfile
✔	7TDH	25829	2023-07-07	2021-12-31	4.0	4.95	4.67	4.5	0.003	0.77	0.0	0.04	13.63	0.00	2.254	4.64	0.00	5.1	94.9	0.0	-1.74	0.84	0.67	—	4.5	0.030	2.65	66.0	0.11	19.67	0.02	0.888	153.73	3.43	43.9	54.5	1.5	-7.26	2.44	0.88	0.83	—	117532	13060	8	0	3616	0	0	logfile
✔	7TDi	25830	2023-07-07	2021-12-31	3.3	3.81	3.62	3.6	0.005	0.81	0.0	0.04	16.22	0.01	2.159	4.24	0.85	4.4	95.5	0.1	-0.18	0.82	0.72	0.41	3.6	0.060	3.45	153.0	0.17	19.75	0.02	1.655	78.91	3.69	33.8	63.9	2.3	-7.06	1.45	0.89	0.87	1.83	117132	12936	8	0	3616	0	0	logfile
✔	7UMZ	26610	2023-07-05	2022-04-08	3.09	3.37	3.21	3.3	0.004	0.87	0.0	0.04	17.35	0.01	2.198	7.00	2.38	6.1	93.3	0.6	-1.01	0.68	0.70	1.58	3.3	0.060	2.98	178.0	0.19	19.49	0.02	0.810	51.66	2.96	27.0	70.3	2.8	-6.90	1.64	0.75	0.86	2.31	111437	12516	12	0	3221	8	0	logfile
✔	6ZYD	11557	2023-07-15	2020-07-31	3.0	3.62	2.76	3.4	0.017	1.20	0.0	0.12	17.41	0.01	2.269	4.88	0.00	5.1	94.9	0.0	-3.12	0.75	0.77	4.36	3.4	0.059	2.56	0.0	0.17	18.86	0.02	1.731	57.41	12.94	21.7	78.3	0.0	-6.09	1.47	0.79	0.86	3.23	31423	1792	14	0	476	0	14490	logfile
✔	6XTB	10618	2023-07-03	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.005	1.12	0.0	0.05	9.13	0.00	2.119	10.22	0.00	25.1	74.9	0.0	-5.72	2.48	0.34	0.65	—	1161	235	1	0	0	0	0	logfile
✔	5LiJ	4054	2023-07-03	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.64	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.005	1.18	0.0	0.04	10.31	0.00	2.148	15.12	0.00	32.0	68.0	0.0	-5.66	1.48	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✔	7JSH	22454	2023-07-04	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.005	1.30	0.0	0.05	13.69	0.01	1.942	27.17	0.00	31.8	67.9	0.3	-5.48	6.11	0.73	0.61	—	7916	1904	8	15	0	0	0	logfile
✔	3JAC	6343	2023-07-08	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	57.64	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.69	0.0	0.06	13.69	0.01	1.923	77.11	0.00	27.1	71.7	1.2	-5.31	3.69	0.54	0.61	—	15741	1716	3	0	1038	0	0	logfile
✔	6SHS	10204	2023-07-04	2019-08-08	4.4	4.36	—	4.3	0.009	1.02	0.0	0.06	12.04	0.00	2.341	25.68	0.00	21.1	78.9	0.0	-5.87	0.69	0.62	—	4.4	0.002	0.64	0.0	0.05	12.90	0.00	2.248	6.00	0.00	16.4	83.6	0.0	-5.26	1.68	0.73	0.71	—	7068	480	12	0	0	0	3408	logfile
✔	7YR6	34047	2023-07-03	2022-08-09	4.8	5.13	4.65	4.7	0.004	0.88	0.0	0.05	20.67	0.00	2.291	7.11	3.30	15.1	84.9	0.0	-5.39	0.81	0.74	—	4.7	0.006	0.85	0.0	0.05	21.69	0.01	2.063	46.62	0.00	26.4	73.6	0.0	-5.22	0.82	0.83	0.81	—	4248	220	5	118	0	0	0	logfile
✔	5G2X	3331	2023-07-09	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.005	0.87	0.0	0.04	19.17	0.01	1.949	36.81	0.45	21.6	77.1	1.3	-5.19	1.94	0.80	0.66	0.50	19072	487	3	704	0	0	0	logfile

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