Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XD6	33137	2023-08-11	2022-03-26	2.84	3.25	2.83	3.0	0.005	0.74	0.0	0.04	15.28	0.00	1.975	1.30	0.00	0.0	0.0	0.0	—	0.88	0.86	—	3.0	0.005	0.66	0.0	0.04	16.14	0.00	1.883	7.41	0.00	0.0	0.0	0.0	—	1.32	0.88	0.89	—	9843	0	3	459	29	0	0	logfile
✔	7XD5	33136	2023-08-10	2022-03-26	2.84	3.32	2.81	3.1	0.003	0.58	0.0	0.03	13.91	0.00	1.864	0.61	0.00	0.0	0.0	0.0	—	0.88	0.86	—	3.1	0.004	0.64	0.0	0.04	15.36	0.00	1.949	6.26	0.00	0.0	0.0	0.0	—	1.38	0.89	0.90	—	8714	0	3	406	30	0	0	logfile
✔	7PTL	13630	2023-08-17	2021-09-27	4.9	10.06	4.95	—	0.005	1.01	0.0	0.06	16.11	0.01	2.401	0.61	0.00	0.0	0.0	0.0	—	0.88	0.79	—	—	0.007	0.90	0.0	0.04	21.29	0.01	1.737	86.57	0.00	0.0	0.0	0.0	—	3.52	0.91	0.92	—	23080	0	1	720	0	0	7743	logfile
✔	7XSK	33425	2023-08-12	2022-05-14	3.53	4.49	3.42	3.4	0.001	0.44	0.0	0.02	15.94	0.00	1.970	6.98	0.00	0.0	0.0	0.0	—	0.90	0.76	—	3.4	0.007	0.68	0.0	0.04	18.66	0.01	1.750	33.29	0.00	0.0	0.0	0.0	—	1.90	0.91	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	7PTQ	13633	2023-08-15	2021-09-27	4.08	6.47	4.22	4.0	0.005	0.78	0.0	0.04	15.27	0.00	1.983	0.92	0.00	0.0	0.0	0.0	—	0.91	0.80	—	4.0	0.006	0.67	0.0	0.04	19.44	0.00	1.852	43.48	0.00	0.0	0.0	0.0	—	2.75	0.96	0.94	—	17434	0	1	544	0	0	5847	logfile
✔	6ULC	20813	2023-08-16	2019-10-07	4.6	4.75	—	4.5	0.006	0.94	0.0	0.07	14.54	0.00	2.086	5.68	0.29	0.0	100.0	0.0	-4.46	0.79	0.67	—	4.5	0.004	0.91	0.0	0.06	13.81	0.00	2.095	19.78	0.00	11.8	88.1	0.0	-2.81	0.83	0.79	0.70	—	19968	2301	46	0	142	0	0	logfile
✔	7YG9	33812	2023-08-10	2022-07-11	2.68	3.47	2.76	2.8	0.005	0.51	0.0	0.03	15.21	0.00	1.804	13.88	0.00	0.0	0.0	0.0	—	0.86	0.81	—	2.8	0.006	0.61	0.0	0.04	15.60	0.00	1.866	18.12	0.00	0.0	0.0	0.0	—	0.39	0.92	0.92	—	8630	0	3	404	8	0	0	logfile
✔	6YoV	10864	2023-08-12	2020-04-15	3.42	4.61	—	3.9	0.011	1.14	0.0	0.07	25.22	0.01	2.395	0.86	0.00	0.0	100.0	0.0	0.87	0.88	0.82	1.84	3.8	0.004	0.70	0.0	0.04	26.21	0.00	2.079	11.49	0.43	1.3	98.7	0.0	2.30	1.24	0.88	0.84	2.16	12298	898	18	262	8	0	0	logfile
✔	7XSN	33428	2023-08-10	2022-05-14	3.01	4.02	3.04	3.2	0.013	1.06	0.0	0.05	16.67	0.01	2.252	5.79	0.00	0.0	0.0	0.0	—	0.91	0.84	—	3.2	0.006	0.61	0.0	0.03	16.36	0.00	2.111	20.82	0.00	0.0	0.0	0.0	—	0.30	0.92	0.87	—	8279	0	1	387	0	0	0	logfile
✔	7YCi	33740	2023-08-10	2022-07-01	2.98	4.31	3.09	3.2	0.002	0.48	0.0	0.02	14.96	0.00	1.521	15.79	0.00	0.0	0.0	0.0	—	0.93	0.84	—	3.3	0.005	0.61	0.0	0.03	16.13	0.00	1.861	24.75	0.00	0.0	0.0	0.0	—	0.93	0.95	0.89	—	8474	0	2	395	4	0	0	logfile
✔	7ZJ5	14741	2023-08-12	2022-04-08	4.55	5.91	5.09	4.4	0.002	0.65	0.0	0.04	14.68	0.00	2.256	0.50	0.00	0.0	0.0	0.0	—	0.92	0.85	—	4.5	0.008	0.89	0.0	0.04	18.29	0.01	1.666	78.91	0.00	0.0	0.0	0.0	—	3.95	0.94	0.90	—	12014	0	1	374	1	0	4030	logfile
✔	7XSL	33426	2023-08-12	2022-05-14	3.84	4.65	3.83	3.7	0.002	0.47	0.0	0.02	16.20	0.00	1.935	8.02	0.00	0.0	0.0	0.0	—	0.91	0.77	—	3.8	0.006	0.70	0.0	0.04	18.31	0.01	1.810	33.53	0.00	0.0	0.0	0.0	—	1.02	0.92	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	8HD6	34670	2023-08-11	2022-11-03	3.73	4.52	3.73	3.2	0.002	0.54	0.0	0.02	14.51	0.00	1.969	2.97	0.00	0.0	0.0	0.0	—	0.90	0.78	—	3.3	0.008	0.86	0.0	0.05	19.11	0.01	1.720	28.98	0.00	0.0	0.0	0.0	—	2.31	0.91	0.82	—	8980	0	1	419	25	0	0	logfile
✔	7YCH	33739	2023-08-10	2022-07-01	3.09	4.46	3.30	3.5	0.002	0.48	0.0	0.02	14.59	0.00	1.420	15.91	0.00	0.0	0.0	0.0	—	0.92	0.84	—	3.6	0.007	0.67	0.0	0.04	15.78	0.00	1.792	32.28	0.00	0.0	0.0	0.0	—	1.47	0.94	0.88	—	8661	0	2	404	4	0	0	logfile
✔	6UET	20756	2023-08-09	2019-09-23	4.1	4.91	—	5.1	0.010	1.61	0.0	0.07	15.67	0.02	1.977	4.88	0.00	0.0	0.0	0.0	—	0.62	0.73	—	5.0	0.007	0.95	0.0	0.05	22.46	0.01	1.737	49.85	0.00	0.0	0.0	0.0	—	0.79	0.66	0.81	—	3869	0	1	119	1	0	1291	logfile
✔	7PBW	13307	2023-08-11	2021-08-02	2.1	1.98	—	2.1	0.009	0.99	0.0	0.05	12.27	0.01	2.243	2.93	0.00	0.0	100.0	0.0	3.14	0.78	0.90	7.90	2.1	0.004	0.76	0.0	0.04	14.47	0.01	2.150	7.99	0.00	0.0	100.0	0.0	4.46	0.28	0.77	0.90	7.32	9500	873	54	0	81	230	0	logfile
✔	8i7N	35223	2023-08-11	2023-02-01	2.98	3.12	2.92	3.0	0.007	0.66	0.0	0.04	14.75	0.00	1.982	2.00	0.00	0.0	0.0	0.0	—	0.82	0.83	—	3.0	0.008	0.74	0.0	0.04	15.18	0.01	1.932	5.19	0.00	0.0	0.0	0.0	—	0.94	0.87	0.91	—	8979	0	1	418	29	0	0	logfile
✔	7XSM	33427	2023-08-12	2022-05-14	4.01	4.70	4.03	4.0	0.002	0.47	0.0	0.03	15.76	0.00	1.969	7.06	0.00	0.0	0.0	0.0	—	0.90	0.75	—	4.0	0.007	0.76	0.0	0.04	19.93	0.01	1.773	49.65	0.00	0.0	0.0	0.0	—	1.70	0.92	0.82	—	12464	0	1	388	0	0	4165	logfile
✔	7UVT	26816	2023-08-12	2022-05-02	3.9	4.17	4.00	4.1	0.001	0.41	0.0	0.02	16.13	0.00	1.897	6.61	0.00	0.0	0.0	0.0	—	0.76	0.74	—	4.1	0.006	0.70	0.0	0.04	17.94	0.01	1.892	21.35	0.00	0.0	0.0	0.0	—	0.48	0.77	0.76	—	12409	0	1	386	0	0	4149	logfile
✔	6XL6	22235	2023-08-09	2020-06-28	3.0	3.41	—	3.3	0.005	0.68	0.0	0.05	20.19	0.00	2.257	5.23	0.00	0.0	100.0	0.0	-1.93	0.76	0.83	2.94	3.3	0.003	0.53	0.0	0.04	21.18	0.00	2.275	6.47	2.65	1.3	98.7	0.0	0.64	1.38	0.74	0.83	2.39	5456	536	6	46	4	0	0	logfile

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