Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7A6A	11668	2021-09-05	2020-08-25	1.15	1.13	—	1.2	0.018	1.70	24.0	0.16	14.70	0.01	1.857	3.78	3.03	1.2	98.8	0.0	2.45	0.47	0.61	9.02	1.2	0.002	0.54	0.0	0.04	15.40	0.00	2.271	2.99	1.82	1.8	98.2	0.0	4.91	0.44	0.68	0.80	8.90	41613	4152	72	0	32	4621	0	logfile
✘	7A4M	11638	2021-09-11	2020-08-20	1.22	1.13	1.28	1.2	0.010	1.37	0.0	0.09	13.82	0.01	0.001	2.43	1.18	1.8	98.2	0.0	2.86	0.40	0.57	8.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	76248	4128	24	0	48	2640	36216	logfile
✔	7A6B	11669	2021-09-05	2020-08-25	1.33	1.21	—	1.3	0.015	1.60	24.0	0.12	15.33	0.01	1.893	4.57	4.17	1.2	98.8	0.0	2.52	0.52	0.65	9.13	1.3	0.003	0.71	0.0	0.04	14.93	0.00	2.118	3.76	1.79	1.8	98.2	0.0	4.27	0.42	0.75	0.85	9.05	41494	4152	72	0	32	3854	0	logfile
✔	7K3V	22657	2021-09-06	2020-09-14	1.34	1.44	—	1.4	0.005	0.80	0.0	0.04	14.68	0.00	0.211	2.71	0.00	1.2	98.8	0.0	3.60	0.69	0.78	8.90	1.4	0.005	0.79	0.0	0.04	14.91	0.01	1.992	2.40	0.61	1.2	98.8	0.0	3.81	0.33	0.72	0.82	8.91	38406	4128	72	0	334	2672	0	logfile
✔	7K3W	22658	2021-09-06	2020-09-14	1.36	1.48	—	1.5	0.004	0.77	0.0	0.04	14.50	0.00	1.934	2.97	0.00	1.8	98.2	0.0	3.35	0.73	0.80	9.05	1.5	0.003	0.64	0.0	0.04	14.73	0.00	2.045	2.26	0.00	1.8	98.2	0.0	4.43	0.16	0.73	0.80	9.20	39086	4128	72	0	382	2680	0	logfile
✔	6Z9F	11122	2021-09-05	2020-06-03	1.56	1.61	1.61	1.6	0.015	1.75	48.0	0.10	15.49	0.01	1.782	5.46	3.66	1.7	98.3	0.0	2.70	0.68	0.69	8.63	1.6	0.002	0.60	0.0	0.04	15.15	0.00	2.178	5.28	3.05	1.6	98.4	0.0	5.05	0.98	0.83	0.84	8.67	41020	4152	72	0	32	4172	0	logfile
✔	7KoD	22972	2021-09-04	2020-11-08	1.655	2.30	—	1.9	0.001	0.35	0.0	0.03	8.49	0.00	2.288	0.78	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	1.9	0.004	0.49	0.0	0.03	13.79	0.00	1.882	1.73	0.11	0.9	99.1	0.0	5.23	0.59	0.87	0.93	8.04	68186	4128	48	0	0	1727	32643	logfile
✘	7EFC	31083	2021-09-04	2021-03-21	1.7	1.76	1.83	1.9	0.033	3.25	80.0	0.10	14.95	0.00	0.000	2.92	2.15	2.5	96.6	0.8	-0.84	0.73	0.80	6.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20020	2400	20	0	20	780	0	logfile
✔	7A5V	11657	2021-09-04	2020-08-22	1.7	1.73	1.69	1.8	0.014	1.65	0.0	0.09	13.53	0.02	0.000	2.30	0.48	2.2	97.8	0.0	-0.05	0.61	0.79	6.90	1.8	0.003	0.64	0.0	0.04	13.96	0.00	0.000	5.21	0.62	0.6	99.4	0.0	1.87	0.92	0.72	0.85	6.35	21155	2275	30	0	85	1015	0	logfile
✘	7EFD	31084	2021-09-04	2021-03-21	1.77	1.79	1.83	1.9	0.034	3.25	60.0	0.10	15.30	0.00	0.000	2.62	2.15	1.7	97.5	0.8	-0.54	0.71	0.78	5.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20020	2400	20	0	20	780	0	logfile
✔	5K12	8194	2021-09-03	2016-05-17	1.8	2.39	—	2.8	0.008	0.98	0.0	0.06	10.27	0.01	2.051	19.79	0.82	3.8	96.2	0.0	-2.53	0.66	0.74	5.80	2.8	0.012	1.26	0.0	0.04	15.52	0.01	1.696	14.60	1.23	2.6	97.4	0.0	1.66	1.08	0.70	0.89	3.75	14856	1764	12	0	0	1086	0	logfile
✔	6S61	10101	2021-09-04	2019-07-02	1.84	1.89	1.85	1.9	0.011	1.36	0.0	0.06	12.21	0.01	0.312	2.30	1.29	1.8	98.2	0.0	3.69	0.77	0.86	8.46	1.9	0.004	0.63	0.0	0.04	14.73	0.00	1.766	5.08	0.65	1.2	98.8	0.0	4.22	0.74	0.78	0.88	8.81	71060	4128	72	0	30	3854	32904	logfile
✔	6ZGL	11210	2021-09-03	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	8.33	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.003	0.55	0.0	0.04	15.71	0.00	2.114	4.82	1.06	0.7	99.3	0.0	3.63	0.75	0.75	0.82	7.01	15760	1848	24	0	0	964	0	logfile
✘	6SAE	10129	2021-09-02	2019-07-16	1.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	164640	18360	480	360	600	11040	0	logfile
✔	6CVM	7770	2021-09-06	2018-03-28	1.9	2.49	1.94	2.3	0.012	0.93	0.0	0.07	10.17	0.01	2.053	3.57	0.00	2.7	97.3	0.0	-1.16	0.81	0.91	7.66	2.3	0.004	0.60	0.0	0.04	13.80	0.00	2.031	5.92	0.83	2.5	97.5	0.0	0.71	0.37	0.85	0.93	6.83	37062	4084	12	0	20	4194	0	logfile
✔	7JJP	22358	2021-09-06	2020-07-27	1.94	2.15	2.08	2.1	0.012	1.21	0.0	0.07	14.61	0.01	2.228	2.51	0.56	1.6	98.4	0.0	0.39	0.71	0.85	5.30	2.1	0.004	0.61	0.0	0.04	15.31	0.00	2.076	7.32	0.79	1.8	98.2	0.0	3.42	0.94	0.72	0.87	4.96	40920	2352	36	0	180	396	19104	logfile
✔	7MBX	23749	2021-09-02	2021-04-01	1.95	2.56	1.94	2.4	0.014	1.16	1.0	0.22	12.85	0.01	2.287	2.16	0.45	1.5	98.5	0.0	-0.11	0.72	0.86	4.55	2.3	0.003	0.73	0.0	0.07	15.37	0.00	2.186	6.91	1.00	1.0	99.0	0.0	1.65	0.54	0.73	0.88	4.34	8433	1065	11	0	2	61	0	logfile
✘	7D1T	30547	2021-09-02	2020-09-15	1.95	1.88	1.89	1.9	0.019	1.80	31.0	0.10	18.25	0.02	1.200	3.31	2.40	1.9	97.9	0.2	-0.93	0.77	0.85	6.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52994	5312	108	0	196	2432	0	logfile
✘	6YBQ	10771	2021-09-05	2020-03-17	1.96	2.06	—	2.0	0.039	1.60	0.0	0.05	15.08	0.01	1.550	4.52	0.00	2.7	97.3	0.0	-1.94	0.82	0.87	6.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	34092	4289	36	0	12	871	0	logfile
✔	6YL3	10835	2021-09-11	2020-04-06	1.98	2.04	1.99	2.0	0.067	3.60	246.0	0.36	16.35	0.02	1.877	4.38	2.74	5.3	94.4	0.4	-2.46	0.78	0.83	6.40	2.0	0.003	0.71	0.0	0.05	16.22	0.00	1.819	5.07	1.52	3.6	96.2	0.1	0.08	0.82	0.81	0.86	6.95	150156	9552	84	0	24	3672	73044	logfile

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