Table showing results for October 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7K3W	22658	2021-10-07	2020-09-14	1.36	1.48	—	1.5	0.005	0.76	0.0	0.04	14.50	0.00	1.934	2.97	0.00	1.8	98.2	0.0	3.35	0.73	0.80	9.05	1.5	0.003	0.64	0.0	0.04	14.89	0.00	2.035	2.19	0.00	1.8	98.2	0.0	4.31	0.17	0.74	0.80	9.20	39086	4128	72	0	382	2680	0	logfile
✔	7MHZ	23837	2021-10-03	2021-04-16	3.2	3.82	—	3.7	0.070	2.83	0.0	0.18	20.05	0.00	2.210	8.27	0.00	3.4	96.6	0.0	1.45	0.61	0.79	2.94	3.7	0.004	1.19	0.0	0.04	22.73	0.00	2.094	36.14	0.00	3.5	96.5	0.0	1.40	0.19	0.63	0.83	2.92	6189	723	6	0	15	0	0	logfile
✔	7MKJ	23897	2021-10-06	2021-04-23	2.9	3.41	3.07	3.3	0.018	0.68	0.0	0.06	16.28	0.00	2.195	5.46	3.83	5.4	94.6	0.0	-1.98	0.69	0.80	3.35	3.3	0.010	0.76	0.0	0.05	17.01	0.01	1.945	7.78	2.67	5.9	94.1	0.1	-1.53	0.21	0.71	0.83	3.20	32007	3754	12	118	6	0	0	logfile
✔	7MKi	23895	2021-10-06	2021-04-23	3.5	3.43	3.54	3.5	0.019	0.77	0.0	0.06	16.91	0.00	2.170	6.40	5.35	7.1	92.8	0.0	-1.84	0.68	0.80	2.21	3.5	0.004	0.66	0.0	0.04	17.13	0.00	1.953	9.29	0.03	6.4	93.6	0.0	-1.40	0.22	0.70	0.80	1.92	30919	3676	10	96	6	0	0	logfile
✔	7DD9	30650	2021-10-07	2020-10-28	2.4	2.49	2.37	2.4	0.007	0.71	0.0	0.05	15.88	0.00	1.932	8.58	1.93	7.1	92.9	0.0	-1.19	0.79	0.87	4.70	2.4	0.005	0.67	0.0	0.05	16.26	0.00	1.944	9.03	2.20	6.0	94.0	0.0	-1.04	0.22	0.80	0.88	4.78	37149	4516	12	0	12	949	0	logfile
✔	6YHS	10809	2021-10-06	2020-03-30	2.7	2.79	2.60	2.8	0.007	0.79	0.0	0.05	15.67	0.01	1.890	3.51	7.08	5.5	94.5	0.0	-2.86	0.79	0.88	3.87	2.8	0.003	0.54	0.0	0.03	15.27	0.00	1.965	4.33	4.29	3.3	96.7	0.0	-0.66	0.24	0.80	0.89	3.68	83514	3069	34	2800	161	0	0	logfile
✔	6YT9	10914	2021-10-06	2020-04-24	2.7	2.80	2.65	2.7	0.010	0.81	0.0	0.05	16.25	0.01	1.825	7.48	8.22	8.1	91.9	0.0	-3.30	0.82	0.86	3.10	2.8	0.006	0.65	0.0	0.04	16.14	0.00	1.874	7.52	4.51	6.3	93.7	0.0	-0.21	0.26	0.84	0.89	2.79	33279	1496	17	1040	56	0	0	logfile
✔	7NL0	12453	2021-10-03	2021-02-19	3.5	3.08	—	3.0	0.006	0.71	0.0	0.04	29.75	0.00	2.147	12.12	0.00	4.1	95.9	0.0	0.67	0.78	0.81	3.10	3.1	0.003	0.59	0.0	0.03	29.94	0.00	2.226	10.91	0.48	2.7	97.3	0.0	2.49	0.26	0.77	0.81	2.82	11363	755	10	262	0	0	0	logfile
✔	7MHY	23836	2021-10-03	2021-04-16	2.7	2.86	—	2.8	0.115	2.81	1.0	0.18	22.85	0.01	2.160	8.09	0.54	3.3	96.7	0.0	1.01	0.65	0.88	3.72	2.8	0.004	1.18	0.0	0.04	22.74	0.00	2.016	41.50	1.89	3.4	96.6	0.0	1.10	0.26	0.63	0.89	3.46	7904	912	6	0	18	15	0	logfile
✔	7NSB	12563	2021-10-04	2021-03-05	3.7	3.60	3.62	3.7	0.004	0.70	0.0	0.05	13.75	0.00	2.214	8.18	0.00	11.5	88.5	0.0	-2.03	0.73	0.82	2.57	3.7	0.011	1.12	1.0	0.04	15.22	0.01	1.851	10.06	0.22	13.1	86.9	0.0	-1.49	0.26	0.73	0.82	2.02	13474	1775	4	0	0	0	0	logfile
✔	7P0M	13148	2021-10-05	2021-06-30	2.75	3.51	2.75	2.7	0.002	0.44	0.0	0.04	16.31	0.00	1.800	7.40	1.88	1.7	98.3	0.0	1.65	0.95	0.88	2.52	2.8	0.003	0.51	0.0	0.04	16.47	0.00	2.016	9.38	2.29	1.8	98.2	0.0	1.61	0.26	0.96	0.89	2.23	25185	3185	19	0	45	0	0	logfile
✔	7NTC	12587	2021-10-06	2021-03-09	3.6	4.35	3.76	4.1	0.015	1.07	0.0	0.05	14.43	0.00	2.165	7.48	0.00	6.7	93.2	0.1	-0.97	0.84	0.83	1.67	4.1	0.008	0.88	1.0	0.04	15.36	0.00	2.157	10.12	0.06	6.8	93.1	0.1	-0.87	0.27	0.84	0.84	1.61	30005	3698	33	0	81	0	0	logfile
✔	7MDZ	23785	2021-10-10	2021-04-06	3.2	3.28	3.23	3.2	0.004	0.56	0.0	0.04	16.15	0.01	1.763	8.11	0.05	5.6	94.4	0.0	-0.92	0.75	0.80	2.72	3.2	0.008	0.75	0.0	0.04	16.81	0.01	1.713	11.33	0.13	5.1	94.9	0.0	-0.84	0.27	0.77	0.84	2.33	211192	11315	99	5594	286	0	0	logfile
✔	6XL6	22235	2021-10-03	2020-06-28	3.0	3.41	—	3.3	0.033	0.70	0.0	0.10	20.14	0.00	2.257	5.23	0.00	0.0	100.0	0.0	-1.93	0.76	0.83	2.94	3.3	0.006	0.85	0.0	0.07	20.80	0.01	2.003	11.15	0.61	0.0	100.0	0.0	-1.45	0.27	0.75	0.84	3.03	5456	536	6	46	4	0	0	logfile
✔	7NS3	12559	2021-10-04	2021-03-05	3.5	3.47	3.37	3.4	0.003	0.57	0.0	0.04	14.36	0.00	2.130	6.40	0.07	5.6	94.4	0.0	0.27	0.83	0.86	2.46	3.4	0.003	0.51	0.0	0.04	15.60	0.00	2.210	5.27	0.33	5.1	94.9	0.0	1.08	0.28	0.83	0.85	1.89	14448	1849	6	0	0	0	0	logfile
✔	7o6E	12738	2021-10-06	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.49	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.004	0.49	0.0	0.03	18.22	0.01	2.202	3.30	0.69	1.0	99.0	0.0	4.35	0.28	0.88	0.89	5.30	35304	4248	48	0	0	1392	0	logfile
✔	7MTS	23996	2021-10-04	2021-05-13	3.2	3.09	—	3.0	0.008	0.81	0.0	0.05	13.26	0.01	2.213	4.32	0.13	3.1	96.9	0.0	0.41	0.83	0.84	2.92	3.0	0.003	0.54	0.0	0.04	14.45	0.00	2.179	3.97	0.19	3.1	96.9	0.0	0.39	0.28	0.83	0.85	2.64	16068	2150	7	0	3	0	0	logfile
✔	7A7C	11677	2021-10-03	2020-08-27	3.16	3.66	3.23	3.5	0.003	0.54	0.0	0.04	13.51	0.00	2.199	6.63	0.00	4.5	95.5	0.0	-0.97	0.82	0.87	3.57	3.5	0.003	0.52	0.0	0.04	14.71	0.00	2.095	6.30	0.11	3.7	96.3	0.0	0.14	0.28	0.83	0.88	3.05	9387	1226	2	0	1	0	0	logfile
✔	7EDJ	31073	2021-10-07	2021-03-16	3.3	3.90	—	3.8	0.005	0.66	0.0	0.05	14.54	0.00	2.085	8.48	0.09	7.9	91.9	0.2	-1.64	0.75	0.72	1.98	3.8	0.008	0.87	2.0	0.05	15.48	0.00	1.553	10.17	0.07	7.4	92.4	0.2	-1.24	0.29	0.81	0.82	1.65	39565	4836	40	0	84	0	0	logfile
✔	7K5i	22681	2021-10-05	2020-09-16	2.9	3.01	—	3.0	0.004	0.63	0.0	0.04	15.78	0.01	2.031	6.50	0.00	3.7	96.3	0.0	-1.25	0.76	0.82	3.57	3.0	0.007	0.77	0.0	0.05	17.23	0.01	2.031	7.27	2.50	4.6	95.3	0.0	-0.62	0.29	0.79	0.86	3.00	74540	4881	40	1665	4	0	0	logfile

• Page 1 of 296
• next →