Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NKJ	12441	2022-04-09	2021-02-18	2.17	2.16	—	2.1	0.005	0.59	0.0	0.05	16.78	0.00	1.958	2.88	1.05	1.8	98.2	0.1	1.04	0.80	0.89	6.04	2.1	0.004	0.55	0.0	0.04	16.76	0.00	1.766	2.90	1.05	1.6	98.3	0.1	1.18	0.12	0.80	0.90	5.92	45605	2945	20	0	11	516	22478	logfile
✔	7K3W	22658	2022-04-09	2020-09-14	1.36	1.48	—	1.5	0.005	0.76	0.0	0.04	14.50	0.00	1.934	3.30	0.00	1.8	98.2	0.0	3.35	0.73	0.80	9.05	1.5	0.003	0.65	0.0	0.04	14.77	0.00	2.038	2.63	0.00	1.8	98.2	0.0	4.21	0.17	0.75	0.82	9.20	39086	4128	72	0	382	2680	0	logfile
✔	7RE2	24431	2022-04-06	2021-07-12	3.17	3.46	—	3.4	0.024	0.68	0.0	0.13	12.76	0.00	1.932	8.83	2.42	5.0	95.0	0.0	-0.57	0.77	0.83	3.11	3.4	0.005	0.66	0.0	0.04	13.29	0.00	1.880	12.25	0.24	4.7	95.3	0.0	-0.51	0.17	0.76	0.84	3.00	17096	1963	9	71	13	0	0	logfile
✔	7MHZ	23837	2022-04-04	2021-04-16	3.2	3.82	—	3.7	0.070	2.83	0.0	0.18	20.07	0.00	2.210	8.27	0.00	3.4	96.6	0.0	1.45	0.61	0.79	2.94	3.7	0.004	1.20	0.0	0.04	22.92	0.00	2.057	36.16	0.00	3.4	96.6	0.0	1.47	0.19	0.61	0.80	2.92	6189	723	6	0	15	0	0	logfile
✔	7NSB	12563	2022-04-05	2021-03-05	3.7	3.60	3.62	3.7	0.004	0.70	0.0	0.05	13.75	0.00	2.214	8.26	0.00	11.5	88.5	0.0	-2.03	0.73	0.82	2.57	3.7	0.011	1.14	1.0	0.04	14.74	0.01	1.921	11.51	0.07	13.6	86.2	0.1	-1.91	0.21	0.74	0.82	2.32	13474	1775	4	0	0	0	0	logfile
✔	6YHS	10809	2022-04-07	2020-03-30	2.7	2.79	2.60	2.8	0.007	0.79	0.0	0.05	15.67	0.01	1.890	3.54	7.08	5.5	94.5	0.0	-2.86	0.79	0.88	3.87	2.8	0.005	0.63	0.0	0.04	15.44	0.00	1.885	3.83	4.76	4.3	95.7	0.0	-0.63	0.21	0.79	0.88	3.62	83514	3069	34	2800	161	0	0	logfile
✔	7MGM	23829	2022-04-07	2021-04-12	3.1	3.35	3.11	3.0	0.004	0.55	0.0	0.04	14.02	0.00	1.874	5.80	0.04	2.4	97.6	0.0	0.78	0.87	0.89	2.62	3.0	0.002	0.43	0.0	0.04	14.90	0.00	1.981	5.68	0.07	1.8	98.2	0.0	1.66	0.21	0.87	0.90	2.25	24079	2964	4	0	6	0	0	logfile
✔	7MKJ	23897	2022-04-08	2021-04-23	2.9	3.41	3.07	3.3	0.018	0.68	0.0	0.06	16.28	0.00	2.195	5.49	3.83	5.4	94.6	0.0	-1.98	0.69	0.80	3.35	3.3	0.009	0.67	0.0	0.05	17.01	0.00	1.956	7.85	2.49	5.3	94.7	0.0	-1.43	0.21	0.71	0.83	3.18	32007	3754	12	118	6	0	0	logfile
✔	7NK7	12432	2022-04-09	2021-02-17	2.11	2.13	—	2.1	0.006	0.63	0.0	0.05	16.46	0.00	2.121	3.56	0.88	1.8	98.1	0.1	1.07	0.80	0.89	5.91	2.1	0.003	0.55	0.0	0.04	16.33	0.00	1.838	3.47	0.84	1.8	98.1	0.1	1.33	0.22	0.81	0.91	5.74	45644	2954	20	0	11	459	22525	logfile
✔	7MKi	23895	2022-04-08	2021-04-23	3.5	3.43	3.54	3.5	0.019	0.77	0.0	0.06	16.91	0.00	2.170	6.42	5.35	7.1	92.8	0.0	-1.84	0.68	0.80	2.21	3.5	0.004	0.66	0.0	0.04	17.13	0.01	1.957	9.23	0.10	6.2	93.8	0.0	-1.40	0.22	0.69	0.79	1.89	30919	3676	10	96	6	0	0	logfile
✔	7DD9	30650	2022-04-08	2020-10-28	2.4	2.49	2.37	2.4	0.007	0.71	0.0	0.05	15.88	0.00	1.932	8.69	1.93	7.1	92.9	0.0	-1.19	0.79	0.87	4.70	2.4	0.004	0.64	0.0	0.05	16.22	0.00	1.945	9.39	2.10	6.2	93.8	0.0	-0.98	0.22	0.80	0.88	4.84	37149	4516	12	0	12	949	0	logfile
✔	7LGU	23329	2022-04-05	2021-01-21	2.3	2.77	—	2.7	0.003	0.93	0.0	0.04	14.18	0.00	2.197	8.08	1.15	1.6	98.4	0.0	1.41	0.64	0.84	5.76	2.7	0.002	0.45	0.0	0.04	14.54	0.00	2.136	5.06	0.71	1.8	98.2	0.0	1.55	0.22	0.64	0.85	5.47	11597	1360	6	0	110	111	0	logfile
✔	7TAo	25779	2022-04-06	2021-12-21	3.2	3.44	—	3.5	0.057	3.16	0.0	0.07	15.77	0.00	2.109	9.87	0.00	1.7	98.3	0.0	1.97	0.67	0.81	2.29	3.5	0.007	1.71	0.0	0.06	16.90	0.01	1.900	15.94	0.13	1.8	98.2	0.0	0.89	0.22	0.69	0.83	2.30	22497	2915	23	0	9	0	0	logfile
✔	7RDX	24426	2022-04-09	2021-07-12	3.1	3.69	—	3.6	0.021	0.67	0.0	0.07	13.60	0.00	1.919	7.40	0.00	6.3	93.7	0.0	-1.43	0.77	0.81	2.79	3.6	0.003	0.59	0.0	0.04	13.94	0.00	1.871	8.96	0.09	6.3	93.7	0.0	-1.33	0.23	0.76	0.81	2.74	42324	2553	11	80	19	0	20496	logfile
✔	7NKH	12439	2022-04-09	2021-02-18	2.78	2.86	—	2.8	0.002	0.50	0.0	0.04	14.54	0.00	2.013	3.97	0.00	2.1	97.8	0.1	1.32	0.84	0.88	4.82	2.8	0.004	0.51	0.0	0.04	15.32	0.00	1.731	4.04	0.21	2.1	97.9	0.1	1.28	0.23	0.84	0.89	4.67	45277	2959	18	0	11	16	22565	logfile
✔	7VD8	31910	2022-04-08	2021-09-06	1.96	1.42	2.01	1.7	0.002	0.54	0.0	0.04	16.17	0.00	2.013	2.67	0.03	2.2	97.8	0.0	5.39	0.75	0.80	7.92	1.7	0.002	0.55	0.0	0.04	16.50	0.00	2.001	2.31	0.05	1.5	98.5	0.0	5.41	0.23	0.72	0.78	8.03	38201	4128	72	0	329	2472	0	logfile
✔	7NL0	12453	2022-04-05	2021-02-19	3.5	3.08	—	3.0	0.006	0.71	0.0	0.04	29.75	0.00	2.147	12.17	0.00	4.1	95.9	0.0	0.67	0.78	0.81	3.10	3.1	0.003	0.60	0.0	0.04	30.05	0.00	2.226	11.10	0.16	2.7	97.3	0.0	2.26	0.24	0.78	0.81	2.84	11363	755	10	262	0	0	0	logfile
✔	7A7C	11677	2022-04-04	2020-08-27	3.16	3.66	3.23	3.5	0.003	0.54	0.0	0.04	13.51	0.00	2.199	6.63	0.00	4.5	95.5	0.0	-0.97	0.82	0.87	3.57	3.5	0.005	0.55	0.0	0.04	14.63	0.00	2.108	6.73	0.11	5.1	94.9	0.0	-0.29	0.24	0.83	0.89	3.27	9387	1226	2	0	1	0	0	logfile
✔	7NJS	12417	2022-04-07	2021-02-17	2.46	2.50	—	2.2	0.002	0.50	0.0	0.04	16.68	0.00	1.978	4.14	1.22	1.7	98.3	0.0	2.22	0.85	0.88	4.05	2.2	0.005	0.54	0.0	0.04	16.79	0.00	1.664	4.75	1.59	2.5	97.5	0.0	1.80	0.24	0.86	0.90	4.20	74642	4932	31	0	11	16	37346	logfile
✔	7MDZ	23785	2022-04-18	2021-04-06	3.2	3.28	3.23	3.2	0.004	0.56	0.0	0.04	16.15	0.01	1.763	8.18	0.05	5.6	94.4	0.0	-0.92	0.75	0.80	2.72	3.2	0.010	0.82	1.0	0.05	16.57	0.01	1.729	10.10	0.16	4.8	95.2	0.0	-0.70	0.24	0.76	0.82	2.27	211192	11315	99	5594	286	0	0	logfile

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