Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7R6L	24281	2023-02-18	2021-06-22	2.85	3.04	—	3.0	0.008	0.89	0.0	0.05	16.80	0.01	1.985	4.24	0.00	0.0	0.0	0.0	—	0.67	0.86	—	3.0	0.006	0.73	0.0	0.04	16.40	0.01	1.882	7.54	0.00	0.0	0.0	0.0	—	0.09	0.62	0.86	—	7857	0	3	366	20	0	0	logfile
✔	7PM4	13520	2023-02-21	2021-09-01	2.49	2.26	—	2.5	0.003	0.54	0.0	0.04	16.95	0.00	2.237	4.75	1.06	4.9	95.1	0.0	0.76	0.79	0.88	5.85	2.5	0.002	0.51	0.0	0.04	16.67	0.00	2.255	3.77	1.73	5.4	94.6	0.0	0.92	0.12	0.80	0.90	5.88	14288	1724	12	0	8	60	0	logfile
✔	7T2E	25611	2023-02-16	2021-12-03	2.7	3.14	—	3.0	0.003	0.54	0.0	0.04	16.11	0.00	2.242	1.92	1.18	0.3	99.7	0.0	0.14	0.34	0.84	5.04	3.0	0.002	0.49	0.0	0.04	16.21	0.00	2.222	2.35	1.18	0.3	99.7	0.0	0.45	0.13	0.36	0.86	4.79	2390	312	2	0	0	0	0	logfile
✔	7Y15	33557	2023-02-18	2022-06-06	2.9	3.05	2.85	3.1	0.003	0.56	0.0	0.04	16.24	0.00	2.248	7.87	2.70	2.2	97.8	0.0	1.26	0.67	0.84	3.40	3.1	0.002	0.52	0.0	0.04	16.54	0.00	2.250	8.35	3.26	1.8	98.2	0.0	1.41	0.16	0.67	0.85	3.38	8495	1109	6	0	3	0	0	logfile
✔	7UZE	26886	2023-02-21	2022-05-09	2.4	2.27	2.42	2.3	0.003	0.58	0.0	0.04	15.32	0.00	2.040	3.56	0.68	3.0	96.6	0.4	1.69	0.66	0.88	6.32	2.3	0.002	0.51	0.0	0.04	14.96	0.00	2.086	5.01	0.95	3.2	96.4	0.4	1.42	0.16	0.65	0.87	6.36	14969	988	12	0	4	113	7392	logfile
✔	7UZU	26918	2023-02-18	2022-05-09	2.3	2.23	2.31	2.2	0.003	0.57	0.0	0.04	17.47	0.01	2.124	3.14	0.52	3.1	96.9	0.0	1.73	0.60	0.87	5.53	2.2	0.003	0.52	0.0	0.04	17.57	0.00	2.102	3.83	0.78	4.0	96.0	0.0	2.44	0.18	0.59	0.87	5.51	7399	483	4	0	0	79	3655	logfile
✔	7R6M	24282	2023-02-18	2021-06-22	3.68	3.27	—	3.4	0.006	0.94	0.0	0.04	17.86	0.01	2.005	4.72	0.00	0.0	0.0	0.0	—	0.53	0.72	—	3.4	0.007	0.85	0.0	0.04	18.31	0.01	1.758	16.73	0.00	0.0	0.0	0.0	—	0.19	0.53	0.72	—	7755	0	3	362	13	0	0	logfile
✔	7PX8	13691	2023-02-23	2021-10-08	3.27	3.27	—	3.2	0.002	0.52	0.0	0.04	12.52	0.01	2.236	3.53	0.05	2.2	97.8	0.0	-0.37	0.78	0.86	3.66	3.2	0.002	0.50	0.0	0.04	13.58	0.00	2.215	3.84	0.27	2.6	97.4	0.0	0.04	0.19	0.80	0.88	3.41	21409	2798	4	0	0	0	0	logfile
✔	7T6E	25714	2023-02-17	2021-12-13	3.1	3.11	—	3.1	0.129	5.90	240.0	0.23	23.20	0.02	2.041	30.29	0.00	0.0	0.0	0.0	—	0.60	0.87	—	3.1	0.122	5.61	240.0	0.36	21.80	0.02	2.082	31.46	0.00	0.0	0.0	0.0	—	0.19	0.66	0.90	—	3480	0	60	0	300	0	0	logfile
✔	8EHG	28147	2023-02-19	2022-09-14	2.24	2.24	2.25	2.3	0.003	0.53	0.0	0.04	16.09	0.00	2.291	4.70	1.44	1.5	98.5	0.0	1.13	0.74	0.83	5.20	2.4	0.003	0.55	0.0	0.04	16.76	0.00	2.229	4.04	2.16	1.2	98.8	0.0	1.61	0.20	0.72	0.84	5.39	10472	1372	4	0	0	0	0	logfile
✔	8D0B	27104	2023-02-27	2022-05-26	3.43	4.09	3.52	2.2	0.002	0.48	0.0	0.04	15.42	0.00	2.167	5.41	0.06	3.1	96.9	0.0	1.19	0.87	0.83	1.67	2.2	0.006	0.58	0.0	0.04	15.99	0.00	2.165	6.56	0.09	4.9	95.1	0.0	1.08	0.20	0.88	0.84	1.81	29367	3630	8	15	0	0	0	logfile
✔	7MGM	23829	2023-02-24	2021-04-12	3.1	3.35	3.11	3.0	0.004	0.55	0.0	0.04	14.02	0.00	1.874	5.80	0.04	2.4	97.6	0.0	0.78	0.87	0.89	2.62	3.0	0.002	0.44	0.0	0.04	14.91	0.00	1.983	5.55	0.07	1.9	98.1	0.0	1.60	0.21	0.87	0.90	2.28	24079	2964	4	0	6	0	0	logfile
✔	7ZGP	14710	2023-02-21	2022-04-04	2.7	2.79	2.57	2.8	0.003	0.58	0.0	0.05	14.54	0.00	2.175	10.35	0.96	6.3	93.5	0.2	-0.84	0.79	0.91	5.10	2.8	0.005	0.60	0.0	0.05	15.58	0.00	2.119	9.81	1.99	7.2	92.8	0.0	-1.11	0.22	0.80	0.91	4.81	14055	1767	6	4	2	0	0	logfile
✔	7UB0	26433	2023-02-25	2022-03-14	3.31	3.57	3.27	3.4	0.003	0.47	0.0	0.04	13.05	0.00	2.205	4.98	0.04	2.0	98.0	0.0	-0.12	0.85	0.86	3.45	3.4	0.004	0.51	0.0	0.04	13.91	0.00	2.161	5.30	0.11	3.0	97.0	0.0	0.32	0.22	0.86	0.88	3.32	24993	3109	16	0	50	0	0	logfile
✔	7UKG	26580	2023-02-18	2022-04-01	2.24	2.56	2.27	2.5	0.006	0.58	0.0	0.04	13.16	0.00	2.208	6.08	0.00	1.8	98.2	0.0	2.95	0.68	0.88	4.70	2.5	0.003	0.48	0.0	0.04	13.81	0.00	2.354	5.86	0.22	1.8	98.2	0.0	3.84	0.22	0.70	0.90	4.29	8652	1128	10	0	4	0	0	logfile
✔	7NS3	12559	2023-02-21	2021-03-05	3.5	3.47	3.37	3.4	0.004	0.58	0.0	0.04	14.32	0.00	2.079	6.57	0.00	6.4	93.6	0.0	0.19	0.83	0.86	2.56	3.4	0.003	0.50	0.0	0.04	15.43	0.00	2.175	4.96	0.00	4.8	95.1	0.1	0.91	0.22	0.83	0.86	2.04	14445	1849	6	0	0	0	0	logfile
✔	7W2U	32266	2023-02-26	2021-11-24	2.6	2.72	—	2.7	0.008	0.81	2.0	0.04	17.93	0.01	2.156	6.51	1.04	3.1	96.8	0.1	1.10	0.79	0.89	3.99	2.7	0.002	0.53	0.0	0.04	17.22	0.00	2.118	6.71	1.39	3.0	96.9	0.1	1.43	0.22	0.77	0.88	3.75	68170	8270	69	0	45	0	0	logfile
✔	7ZD6	14637	2023-02-25	2022-03-29	3.16	3.35	—	3.2	0.006	0.80	0.0	1.03	15.78	0.01	2.184	4.32	0.27	3.1	96.9	0.0	-0.24	0.93	0.91	2.61	3.2	0.008	1.56	0.0	0.31	15.86	0.00	2.070	6.34	0.13	3.1	96.9	0.0	1.17	0.23	0.92	0.90	2.50	66748	8160	63	0	38	0	0	logfile
✔	7ZGY	14715	2023-02-24	2022-04-04	2.54	3.09	5.67	3.1	0.025	0.90	0.0	0.27	14.44	0.01	1.605	24.14	0.00	10.2	89.5	0.2	-1.88	0.69	0.83	4.57	3.1	0.004	0.88	0.0	0.05	15.60	0.00	1.899	12.83	0.60	10.2	89.7	0.2	-1.80	0.23	0.68	0.87	4.49	21861	2847	6	0	21	0	0	logfile
✔	7VY8	32196	2023-02-26	2021-11-13	2.6	2.69	—	2.7	0.008	0.76	0.0	0.05	16.23	0.01	2.057	5.89	0.99	3.7	96.2	0.1	0.22	0.76	0.89	4.13	2.7	0.002	0.51	0.0	0.04	16.54	0.00	2.183	5.45	1.41	3.2	96.7	0.1	0.62	0.23	0.76	0.89	3.94	28527	3543	27	0	18	0	0	logfile

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