Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7K3W	22658	2021-08-11	2020-09-14	1.36	1.48	—	1.5	0.004	0.77	0.0	0.04	14.50	0.00	1.934	2.97	0.00	1.8	98.2	0.0	3.35	0.73	0.80	9.05	1.5	0.003	0.65	0.0	0.04	14.89	0.00	2.040	2.19	0.00	1.8	98.2	0.0	4.41	0.13	0.74	0.80	9.20	39086	4128	72	0	382	2680	0	logfile
✔	6YHS	10809	2021-08-11	2020-03-30	2.7	2.79	2.60	2.8	0.007	0.79	0.0	0.05	15.67	0.01	1.890	3.51	7.08	5.5	94.5	0.0	-2.86	0.79	0.88	3.87	2.8	0.004	0.63	0.0	0.04	15.54	0.00	1.923	3.86	4.46	4.5	95.5	0.0	-0.84	0.21	0.80	0.90	3.73	83514	3069	34	2800	161	0	0	logfile
✔	7DD9	30650	2021-08-11	2020-10-28	2.4	2.49	2.37	2.4	0.007	0.71	0.0	0.05	15.88	0.00	1.932	8.58	1.93	7.1	92.9	0.0	-1.19	0.79	0.87	4.70	2.4	0.006	0.71	0.0	0.05	16.32	0.00	1.925	9.29	2.48	6.8	93.2	0.0	-1.16	0.22	0.80	0.88	4.73	37149	4516	12	0	12	949	0	logfile
✔	7A7C	11677	2021-08-07	2020-08-27	3.16	3.66	3.23	3.5	0.003	0.54	0.0	0.04	13.51	0.00	2.199	6.63	0.00	4.5	95.5	0.0	-0.97	0.82	0.87	3.57	3.5	0.003	0.52	0.0	0.04	14.68	0.00	2.063	6.73	0.11	3.7	96.3	0.0	0.07	0.26	0.83	0.88	3.32	9387	1226	2	0	1	0	0	logfile
✔	6YT9	10914	2021-08-10	2020-04-24	2.7	2.80	2.65	2.7	0.010	0.81	0.0	0.05	16.25	0.01	1.825	7.48	8.22	8.1	91.9	0.0	-3.30	0.82	0.86	3.10	2.8	0.006	0.65	0.0	0.04	16.14	0.00	1.874	7.52	4.51	6.3	93.7	0.0	-0.21	0.26	0.84	0.89	2.79	33279	1496	17	1040	56	0	0	logfile
✔	6XL6	22235	2021-08-07	2020-06-28	3.0	3.41	—	3.3	0.033	0.70	0.0	0.10	20.14	0.00	2.257	5.23	0.00	0.0	100.0	0.0	-1.93	0.76	0.83	2.94	3.3	0.006	0.83	0.0	0.07	20.80	0.01	2.003	11.15	0.61	0.0	100.0	0.0	-1.41	0.27	0.75	0.84	3.03	5456	536	6	46	4	0	0	logfile
✔	7RK9	24495	2021-08-25	2021-07-22	2.32	2.78	—	2.8	0.008	0.69	0.0	0.05	15.89	0.01	2.150	7.34	0.69	2.9	97.1	0.0	-0.56	0.69	0.89	5.05	2.8	0.008	0.68	0.0	0.05	16.57	0.01	2.104	7.79	2.06	3.1	96.9	0.0	-0.47	0.27	0.59	0.86	5.03	247500	31380	60	0	0	0	0	logfile
✔	7K5i	22681	2021-08-10	2020-09-16	2.9	3.01	—	3.0	0.004	0.63	0.0	0.04	15.78	0.01	2.031	6.50	0.00	3.7	96.3	0.0	-1.25	0.76	0.82	3.57	3.0	0.006	0.76	0.0	0.05	17.15	0.01	2.039	7.05	2.16	4.3	95.7	0.0	-0.62	0.27	0.79	0.86	3.08	74540	4881	40	1665	4	0	0	logfile
✔	7o6E	12738	2021-08-10	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.49	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.004	0.49	0.0	0.03	18.22	0.01	2.202	3.30	0.69	1.0	99.0	0.0	4.35	0.28	0.88	0.89	5.30	35304	4248	48	0	0	1392	0	logfile
✔	7NSB	12563	2021-08-08	2021-03-05	3.7	3.60	3.62	3.7	0.004	0.70	0.0	0.05	13.75	0.00	2.214	8.18	0.00	11.5	88.5	0.0	-2.03	0.73	0.82	2.57	3.7	0.010	1.08	1.0	0.05	15.16	0.00	2.060	8.72	0.22	11.2	88.7	0.1	-1.22	0.28	0.73	0.82	1.99	13474	1775	4	0	0	0	0	logfile
✔	7NS3	12559	2021-08-08	2021-03-05	3.5	3.47	3.37	3.4	0.003	0.57	0.0	0.04	14.36	0.00	2.130	6.40	0.07	5.6	94.4	0.0	0.27	0.83	0.86	2.46	3.4	0.004	0.54	0.0	0.04	15.54	0.00	2.217	5.38	0.20	5.5	94.5	0.0	1.12	0.29	0.83	0.86	1.91	14448	1849	6	0	0	0	0	logfile
✔	6YN5	10849	2021-08-08	2020-04-10	2.7	2.87	2.79	2.8	0.007	0.83	0.0	0.05	11.66	0.01	2.247	3.73	0.03	1.9	98.1	0.0	-0.33	0.84	0.88	4.96	2.8	0.004	0.56	0.0	0.04	13.67	0.00	2.171	6.20	0.95	1.4	98.6	0.0	0.82	0.29	0.85	0.89	4.23	56994	7110	10	0	0	0	0	logfile
✔	6YPU	10869	2021-08-10	2020-04-16	2.9	2.97	2.78	2.9	0.012	0.99	0.0	0.06	16.54	0.01	1.849	5.98	11.02	9.3	90.5	0.2	-3.96	0.78	0.85	2.54	2.9	0.003	0.56	0.0	0.04	15.79	0.00	1.915	5.08	6.91	5.7	94.3	0.0	-0.70	0.29	0.79	0.87	2.27	33322	1496	17	1040	60	0	0	logfile
✔	7MTS	23996	2021-08-08	2021-05-13	3.2	3.09	—	3.0	0.008	0.81	0.0	0.05	13.26	0.01	2.213	4.32	0.13	3.1	96.9	0.0	0.41	0.83	0.84	2.92	3.0	0.002	0.51	0.0	0.04	14.44	0.00	2.195	3.81	0.13	2.6	97.4	0.0	0.59	0.30	0.83	0.85	2.37	16068	2150	7	0	3	0	0	logfile
✔	7LYC	23592	2021-08-09	2021-03-06	2.94	3.08	2.92	3.1	0.006	0.65	0.0	0.04	25.88	0.00	1.314	6.92	0.10	2.2	97.8	0.0	-0.02	0.73	0.82	3.48	3.1	0.003	0.56	0.0	0.04	26.50	0.00	2.192	7.93	0.98	2.6	97.4	0.0	1.72	0.30	0.76	0.87	3.11	15475	1188	12	293	0	0	0	logfile
✔	7ENN	31217	2021-08-08	2021-04-18	2.8	3.21	—	3.1	0.005	0.66	0.0	0.04	25.33	0.00	2.127	7.99	0.00	4.5	95.4	0.1	-0.16	0.84	0.87	4.06	3.1	0.004	0.60	0.0	0.04	26.26	0.00	2.132	6.66	1.01	4.5	95.5	0.0	0.92	0.30	0.85	0.89	3.47	16319	1300	12	292	2	0	0	logfile
✔	6M54	30084	2021-08-10	2020-03-09	2.4	2.57	—	2.5	0.012	1.16	0.0	0.07	14.96	0.01	2.591	0.71	0.00	4.1	95.9	0.0	-0.37	0.69	0.85	5.34	2.5	0.004	0.67	0.0	0.04	16.63	0.00	2.383	0.46	0.54	4.1	95.9	0.0	3.38	0.30	0.81	0.91	3.69	33382	4104	38	0	6	8	0	logfile
✔	7MR2	23954	2021-08-08	2021-05-07	4.3	4.72	—	4.5	0.003	0.75	0.0	0.05	14.96	0.01	2.257	5.71	0.00	5.1	94.9	0.0	-1.32	0.90	0.84	—	4.5	0.002	0.54	0.0	0.04	14.85	0.00	2.157	9.37	0.00	4.7	95.3	0.0	0.31	0.30	0.90	0.84	—	16671	2075	3	0	0	0	0	logfile
✔	7K0i	22598	2021-08-08	2020-09-04	3.3	3.75	—	3.7	0.006	0.63	0.0	0.05	13.19	0.00	2.222	6.19	0.25	4.0	96.0	0.0	0.10	0.72	0.81	2.93	3.7	0.004	0.56	0.0	0.04	14.26	0.00	2.229	5.80	0.19	4.2	95.8	0.0	0.43	0.31	0.76	0.83	2.42	15366	1954	10	0	6	0	0	logfile
✔	7BC6	12140	2021-08-07	2020-12-18	3.2	3.48	3.20	3.4	0.008	0.90	0.0	0.05	13.65	0.01	2.145	9.52	0.92	7.0	93.0	0.0	-1.77	0.64	0.85	2.92	3.4	0.003	0.65	0.0	0.04	15.22	0.00	2.193	8.21	0.23	4.4	95.6	0.0	0.46	0.31	0.60	0.84	1.94	4178	549	2	0	0	0	0	logfile

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