Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RZT	24777	2022-11-29	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.0	0.003	0.32	0.0	0.03	15.54	0.00	2.332	5.44	0.35	0.0	100.0	0.0	6.21	0.24	0.80	0.82	3.03	2451	324	6	0	0	0	0	logfile
✔	7V0M	26944	2022-11-29	2022-05-10	2.7	2.46	2.64	2.5	0.003	0.56	0.0	0.04	18.10	0.00	2.240	4.65	1.29	3.3	96.7	0.0	0.52	0.56	0.89	4.90	2.5	0.002	0.48	0.0	0.04	18.25	0.00	2.193	6.29	2.58	3.3	96.7	0.0	1.93	0.24	0.56	0.88	4.32	3724	483	4	0	0	60	0	logfile
✔	7Y13	33555	2022-11-29	2022-06-06	3.1	3.20	3.10	3.2	0.005	0.68	0.0	0.04	13.19	0.01	2.195	8.46	0.00	6.1	93.9	0.0	1.88	0.59	0.80	3.01	3.2	0.004	0.58	0.0	0.04	15.64	0.01	2.188	8.24	0.86	5.3	94.7	0.0	2.59	0.26	0.58	0.82	2.60	2199	264	1	0	7	2	0	logfile
✔	7VQQ	32092	2022-11-29	2021-10-20	2.9	2.61	—	3.1	0.009	0.85	0.0	0.05	11.51	0.01	2.233	2.50	0.00	12.4	87.6	0.0	-6.09	0.47	0.86	4.62	3.1	0.004	0.72	0.0	0.04	12.71	0.00	2.270	1.38	0.91	4.1	95.9	0.0	-4.95	0.28	0.48	0.87	4.50	1968	273	3	0	0	0	0	logfile
✔	7BC6	12140	2022-11-29	2020-12-18	3.2	3.48	3.20	3.4	0.008	0.90	0.0	0.05	13.65	0.01	2.145	9.76	0.92	7.0	93.0	0.0	-1.77	0.64	0.85	2.92	3.4	0.003	0.63	0.0	0.04	15.29	0.00	2.201	7.85	0.23	4.2	95.8	0.0	0.39	0.28	0.55	0.82	2.09	4178	549	2	0	0	0	0	logfile
✔	7UL5	26592	2022-11-29	2022-04-03	3.1	3.32	3.08	3.3	0.004	0.64	0.0	0.04	11.76	0.01	2.404	3.68	0.00	3.1	96.9	0.0	-1.07	0.64	0.85	3.67	3.3	0.003	0.52	0.0	0.04	13.36	0.00	2.338	1.47	0.37	1.4	98.6	0.0	2.78	0.29	0.66	0.87	3.19	2773	371	2	0	0	0	0	logfile
✔	7RZQ	24774	2022-11-29	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.003	0.30	0.0	0.03	15.08	0.00	2.337	5.30	0.36	0.0	100.0	0.0	5.90	0.30	0.81	0.82	1.87	2421	322	6	0	0	0	0	logfile
✔	7SQS	25392	2022-11-29	2021-11-06	3.1	3.86	2.91	3.6	0.002	0.47	0.0	0.04	13.61	0.00	2.317	3.59	0.22	2.9	97.1	0.0	1.01	0.76	0.84	2.45	3.6	0.003	0.54	0.0	0.04	14.90	0.00	2.263	3.82	0.00	4.2	95.8	0.0	1.04	0.31	0.78	0.86	2.80	4376	560	5	0	0	0	0	logfile
✔	7RZR	24775	2022-11-29	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.003	0.35	0.0	0.03	15.28	0.00	2.325	4.84	0.35	0.0	100.0	0.0	6.56	0.32	0.81	0.82	3.42	2448	324	6	0	0	0	0	logfile
✔	6UWF	20922	2022-11-29	2019-11-05	3.08	3.26	—	3.3	0.008	1.08	0.0	0.05	16.40	0.01	2.294	2.14	0.00	3.1	96.9	0.0	-3.86	0.70	0.85	2.48	3.3	0.003	0.57	0.0	0.04	15.17	0.00	2.243	6.88	0.00	3.4	96.6	0.0	1.17	0.32	0.67	0.85	2.48	3178	417	1	0	2	0	0	logfile
✔	7WRo	32734	2022-11-29	2022-01-27	3.4	3.62	—	3.6	0.008	1.11	0.0	0.07	13.65	0.01	2.309	7.58	0.00	7.6	92.4	0.0	-1.94	0.58	0.76	2.56	3.6	0.003	0.69	0.0	0.05	14.98	0.00	2.260	12.42	0.29	4.7	95.3	0.0	-1.01	0.34	0.59	0.77	2.40	3179	412	3	0	0	0	0	logfile
✔	7V47	31702	2022-11-29	2021-08-12	2.8	2.80	—	3.0	0.007	0.78	0.0	0.06	12.91	0.00	2.567	6.32	0.00	18.6	81.4	0.0	-5.86	0.44	0.80	6.31	3.0	0.004	0.69	0.0	0.06	17.00	0.00	2.426	6.32	3.25	17.5	82.5	0.0	-4.25	0.34	0.43	0.79	5.70	2484	366	6	0	0	0	0	logfile
✔	7WR8	32718	2022-11-29	2022-01-26	3.5	3.74	—	3.8	0.008	1.15	0.0	0.06	13.71	0.01	2.230	6.22	0.00	12.5	87.5	0.0	-3.48	0.51	0.78	3.43	3.8	0.004	0.69	0.0	0.05	15.49	0.00	2.142	12.28	0.00	9.3	90.7	0.0	-2.55	0.34	0.50	0.77	2.84	3286	417	4	0	3	0	0	logfile
✔	7WEF	32449	2022-11-29	2021-12-23	3.8	3.60	—	3.9	0.003	0.62	0.0	0.04	12.72	0.00	2.239	8.92	0.00	7.5	92.5	0.0	-1.27	0.53	0.76	2.61	3.8	0.003	0.64	0.0	0.04	14.76	0.00	2.178	8.92	0.28	7.3	92.7	0.0	-1.35	0.35	0.55	0.77	1.93	3328	432	3	0	0	0	0	logfile
✔	7BC7	12141	2022-11-29	2020-12-18	3.3	3.46	3.24	3.4	0.009	0.98	0.0	0.05	14.71	0.01	2.110	12.54	0.23	9.4	90.5	0.2	-1.48	0.58	0.84	2.41	3.4	0.003	0.68	0.0	0.04	16.13	0.00	2.199	10.06	0.69	4.6	95.4	0.0	0.08	0.36	0.58	0.85	2.30	4209	549	3	0	1	0	0	logfile
✔	7W3T	32293	2022-11-29	2021-11-26	3.59	2.49	3.54	2.2	0.003	0.60	0.0	0.05	13.93	0.01	2.259	8.96	0.00	4.6	95.4	0.0	-2.83	0.76	0.75	4.00	2.2	0.004	0.65	0.0	0.05	16.04	0.01	2.224	13.09	0.62	6.3	93.7	0.0	-3.15	0.36	0.77	0.76	3.69	1455	176	3	0	7	0	0	logfile
✔	7V0Y	26953	2022-11-29	2022-05-11	3.0	2.81	2.91	2.9	0.003	0.63	0.0	0.04	19.40	0.00	2.203	5.27	1.46	1.5	98.5	0.0	0.80	0.62	0.85	3.45	2.9	0.003	0.59	0.0	0.04	19.66	0.00	2.059	10.09	2.70	1.6	98.4	0.0	1.08	0.36	0.63	0.86	3.29	4454	558	3	0	0	1	0	logfile
✔	7LKF	23405	2022-11-29	2021-02-02	2.9	2.97	—	3.0	0.004	0.66	0.0	0.05	12.84	0.01	2.101	5.38	0.00	4.6	95.4	0.0	-0.59	0.70	0.83	4.15	3.0	0.004	0.64	0.0	0.05	16.63	0.00	2.219	5.26	2.64	3.4	96.6	0.0	-0.24	0.38	0.71	0.86	3.94	4139	511	4	0	2	0	0	logfile
✔	7KJR	22898	2022-11-29	2020-10-26	2.08	2.52	2.15	2.4	0.006	0.84	0.0	0.05	16.31	0.00	2.254	8.14	0.25	1.8	98.2	0.0	1.13	0.68	0.87	5.29	2.4	0.003	0.52	0.0	0.04	16.17	0.00	2.108	10.44	0.74	2.3	97.7	0.0	1.38	0.39	0.63	0.85	4.62	3840	448	8	0	2	122	0	logfile
✔	8DT3	27690	2022-11-29	2022-07-25	3.3	3.99	3.55	3.7	0.004	0.64	0.0	0.04	14.39	0.00	2.125	10.81	0.00	8.2	91.8	0.0	-0.65	0.78	0.83	2.90	3.7	0.004	0.64	0.0	0.04	16.10	0.00	2.103	12.68	0.00	8.0	92.0	0.0	-0.55	0.40	0.79	0.85	2.81	3821	485	4	0	3	0	0	logfile

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