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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3J2P | 5499 | 2023-07-05 | 2012-11-30 | 3.6 | 3.28 | — | 3.4 | 0.010 | 1.92 | 0.0 | 0.12 | 17.56 | 0.02 | 2.155 | 110.32 | 20.13 | 29.7 | 46.3 | 24.1 | -7.75 | 0.42 | 0.79 | 1.08 | 3.3 | 0.003 | 0.89 | 0.0 | 0.04 | 17.84 | 0.00 | 1.911 | 69.53 | 1.47 | 18.7 | 77.9 | 3.4 | -4.26 | 0.93 | 0.38 | 0.72 | 0.85 | 9890 | 1134 | 8 | 0 | 6 | 0 | 1086 | logfile |
✔ | 7CYE | 30498 | 2023-07-04 | 2020-09-03 | 3.54 | 3.31 | — | 3.7 | 0.010 | 1.42 | 0.0 | 0.07 | 12.31 | 0.01 | 2.232 | 4.09 | 1.30 | 12.4 | 87.0 | 0.6 | -7.38 | 0.56 | 0.76 | 2.20 | 3.7 | 0.003 | 0.89 | 0.0 | 0.04 | 14.85 | 0.01 | 2.091 | 7.04 | 0.26 | 10.5 | 89.5 | 0.0 | -2.91 | 0.86 | 0.60 | 0.81 | 2.82 | 7263 | 978 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7BSP | 30163 | 2023-07-06 | 2020-03-31 | 4.0 | 4.12 | — | 4.0 | 0.005 | 0.66 | 0.0 | 0.04 | 13.90 | 0.01 | 1.928 | 53.93 | 0.00 | 14.6 | 85.4 | 0.0 | -7.27 | 0.68 | 0.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11010 | 1352 | 5 | 0 | 5 | 0 | 0 | logfile |
✔ | 8GQY | 34203 | 2023-07-05 | 2022-08-31 | 3.4 | 2.82 | 3.40 | 3.6 | 0.005 | 0.66 | 0.0 | 0.04 | 12.58 | 0.00 | 2.117 | 7.22 | 5.67 | 3.6 | 96.4 | 0.0 | -7.14 | 0.69 | 0.86 | 3.37 | 3.6 | 0.003 | 0.65 | 0.0 | 0.04 | 15.11 | 0.00 | 2.171 | 7.06 | 0.70 | 1.8 | 98.2 | 0.0 | -0.57 | 1.39 | 0.66 | 0.86 | 2.19 | 9515 | 1265 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 7D61 | 30587 | 2023-07-12 | 2020-09-28 | 2.8 | 2.98 | — | 3.0 | 0.003 | 0.77 | 0.0 | 0.04 | 16.22 | 0.01 | 2.340 | 1.83 | 0.00 | 2.4 | 97.6 | 0.0 | -7.13 | 0.69 | 0.82 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26664 | 3168 | 22 | 0 | 55 | 0 | 0 | logfile |
✔ | 6RJU | 4906 | 2023-07-03 | 2019-04-29 | 3.2 | 4.49 | 2.14 | 10.0 | 0.007 | 0.93 | 0.0 | 0.05 | 15.36 | 0.00 | 2.423 | 4.52 | 0.00 | 11.6 | 88.4 | 0.0 | -7.10 | 0.22 | -0.01 | -0.80 | 9.8 | 0.003 | 0.63 | 0.0 | 0.03 | 15.97 | 0.00 | 2.424 | 6.03 | 0.00 | 6.2 | 93.8 | 0.0 | -0.13 | 1.31 | 0.27 | 0.05 | 0.48 | 1992 | 131 | 1 | 0 | 0 | 0 | 997 | logfile |
✔ | 7D65 | 30589 | 2023-07-12 | 2020-09-29 | 2.94 | 3.09 | — | 3.2 | 0.008 | 0.94 | 0.0 | 0.05 | 16.53 | 0.01 | 2.328 | 1.94 | 0.14 | 4.3 | 95.7 | 0.0 | -7.00 | 0.66 | 0.81 | 2.37 | 3.2 | 0.003 | 0.65 | 0.0 | 0.04 | 17.17 | 0.00 | 2.195 | 4.80 | 1.93 | 1.9 | 98.1 | 0.0 | -0.47 | 1.22 | 0.67 | 0.82 | 1.57 | 26664 | 3168 | 22 | 0 | 55 | 0 | 0 | logfile |
✔ | 7XQ2 | 33389 | 2023-07-03 | 2022-05-06 | 3.3 | 3.45 | 3.15 | 3.5 | 0.007 | 0.79 | 1.0 | 0.05 | 15.54 | 0.01 | 2.244 | 6.48 | 0.85 | 3.7 | 96.3 | 0.0 | -6.96 | 0.56 | 0.83 | 4.29 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 16.35 | 0.00 | 2.217 | 8.10 | 0.00 | 3.0 | 97.0 | 0.0 | 0.34 | 2.06 | 0.44 | 0.78 | 3.44 | 3377 | 409 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6RoW | 4975 | 2023-07-18 | 2019-05-13 | 4.5 | 4.52 | 4.16 | 4.2 | 0.016 | 1.50 | 0.0 | 0.07 | 14.46 | 0.01 | 1.848 | 49.61 | 0.00 | 30.3 | 68.7 | 1.0 | -6.95 | 0.81 | 0.74 | — | 4.2 | 0.005 | 0.73 | 0.0 | 0.04 | 13.68 | 0.01 | 1.902 | 16.83 | 0.00 | 16.7 | 83.1 | 0.2 | -3.08 | 1.48 | 0.82 | 0.74 | — | 43049 | 3129 | 7 | 0 | 0 | 0 | 20156 | logfile |
✔ | 7D60 | 30586 | 2023-07-12 | 2020-09-28 | 2.61 | 2.73 | — | 2.7 | 0.006 | 0.89 | 0.0 | 0.05 | 16.40 | 0.01 | 2.395 | 1.56 | 0.00 | 2.1 | 97.9 | 0.0 | -6.95 | 0.70 | 0.83 | 2.76 | 2.7 | 0.002 | 0.59 | 0.0 | 0.03 | 17.69 | 0.00 | 2.194 | 3.75 | 1.83 | 2.6 | 97.4 | 0.0 | 0.99 | 0.52 | 0.69 | 0.84 | 2.11 | 26664 | 3168 | 22 | 0 | 55 | 0 | 0 | logfile |
✔ | 6PW5 | 20499 | 2023-07-11 | 2019-07-22 | 3.45 | 3.53 | — | 3.5 | 0.013 | 1.39 | 0.0 | 0.07 | 14.18 | 0.01 | 2.327 | 4.42 | 1.61 | 11.6 | 87.6 | 0.8 | -6.95 | 0.76 | 0.85 | 3.30 | 3.5 | 0.005 | 0.77 | 0.0 | 0.04 | 16.46 | 0.00 | 2.174 | 9.65 | 0.80 | 9.5 | 90.2 | 0.4 | -1.21 | 1.17 | 0.76 | 0.87 | 2.20 | 24740 | 3032 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 6PW4 | 20498 | 2023-07-10 | 2019-07-22 | 3.53 | 3.64 | — | 3.6 | 0.008 | 1.14 | 0.0 | 0.05 | 17.20 | 0.01 | 2.302 | 5.63 | 0.38 | 10.7 | 89.3 | 0.1 | -6.92 | 0.71 | 0.80 | 1.68 | 3.6 | 0.003 | 0.72 | 0.0 | 0.04 | 17.49 | 0.00 | 2.127 | 11.23 | 0.42 | 9.9 | 90.1 | 0.0 | -1.43 | 0.56 | 0.70 | 0.78 | 1.07 | 22348 | 2742 | 8 | 0 | 10 | 0 | 0 | logfile |
✘ | 6PVN | 20494 | 2023-07-10 | 2019-07-21 | 4.07 | 4.15 | — | 4.1 | 0.006 | 1.33 | 0.0 | 0.06 | 12.87 | 0.01 | 2.256 | 4.31 | 1.23 | 14.2 | 85.3 | 0.5 | -6.84 | 0.68 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20874 | 2576 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 7XQ1 | 33388 | 2023-07-03 | 2022-05-06 | 3.4 | 3.32 | 3.36 | 3.5 | 0.012 | 1.53 | 1.0 | 0.06 | 13.52 | 0.01 | 2.320 | 6.82 | 0.58 | 2.8 | 97.2 | 0.0 | -6.81 | 0.47 | 0.78 | 3.56 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 15.87 | 0.00 | 2.120 | 8.80 | 0.00 | 2.3 | 97.7 | 0.0 | 0.66 | 1.19 | 0.50 | 0.81 | 1.80 | 3302 | 400 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6X3F | 22021 | 2023-07-05 | 2020-05-21 | 3.03 | 3.23 | — | 3.3 | 0.006 | 0.93 | 0.0 | 0.06 | 14.72 | 0.01 | 2.351 | 3.78 | 0.00 | 5.0 | 95.0 | 0.0 | -6.78 | 0.58 | 0.85 | 3.24 | 3.3 | 0.003 | 0.61 | 0.0 | 0.04 | 15.78 | 0.00 | 2.282 | 6.67 | 0.10 | 3.6 | 96.4 | 0.0 | -0.25 | 0.95 | 0.53 | 0.84 | 2.06 | 9366 | 1227 | 6 | 0 | 3 | 0 | 0 | logfile |
✔ | 7XPZ | 33386 | 2023-07-03 | 2022-05-06 | 3.4 | 3.31 | 3.34 | 3.6 | 0.005 | 0.73 | 0.0 | 0.05 | 12.26 | 0.01 | 2.311 | 6.57 | 0.58 | 5.5 | 94.5 | 0.0 | -6.77 | 0.49 | 0.79 | 3.43 | 3.6 | 0.004 | 0.68 | 0.0 | 0.04 | 14.09 | 0.00 | 2.156 | 8.10 | 0.58 | 5.0 | 95.0 | 0.0 | -0.80 | 1.17 | 0.43 | 0.76 | 2.59 | 3227 | 402 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K4A | 22662 | 2023-07-10 | 2020-09-15 | 3.26 | 3.68 | — | 3.7 | 0.013 | 1.44 | 0.0 | 0.06 | 14.78 | 0.01 | 2.263 | 3.83 | 0.52 | 10.5 | 89.4 | 0.2 | -6.74 | 0.52 | 0.81 | 4.18 | 3.7 | 0.003 | 0.72 | 0.0 | 0.04 | 15.32 | 0.00 | 2.180 | 8.02 | 0.38 | 9.7 | 90.3 | 0.0 | -2.20 | 1.34 | 0.62 | 0.86 | 2.52 | 20825 | 2420 | 8 | 0 | 65 | 0 | 0 | logfile |
✔ | 7XQ0 | 33387 | 2023-07-03 | 2022-05-06 | 3.0 | 2.77 | 3.09 | 3.2 | 0.018 | 1.35 | 0.0 | 0.05 | 13.28 | 0.01 | 2.232 | 7.04 | 0.86 | 1.5 | 98.5 | 0.0 | -6.72 | 0.49 | 0.79 | 4.03 | 3.2 | 0.004 | 1.01 | 0.0 | 0.04 | 14.73 | 0.00 | 2.177 | 8.39 | 2.02 | 1.5 | 98.5 | 0.0 | 0.86 | 1.49 | 0.44 | 0.77 | 2.86 | 3320 | 402 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7D10 | 30542 | 2023-07-04 | 2020-09-12 | 3.52 | 3.70 | — | 3.7 | 0.007 | 1.05 | 0.0 | 0.06 | 10.87 | 0.01 | 2.249 | 4.93 | 0.00 | 8.9 | 90.6 | 0.5 | -6.70 | 0.65 | 0.83 | 3.73 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 13.88 | 0.00 | 2.238 | 7.52 | 0.34 | 6.4 | 93.6 | 0.0 | -1.75 | 1.20 | 0.63 | 0.83 | 2.64 | 6424 | 892 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 6HYD | 0308 | 2023-07-06 | 2018-10-19 | 3.9 | 4.01 | — | 4.0 | 0.004 | 0.85 | 0.0 | 0.05 | 9.33 | 0.01 | 2.319 | 2.63 | 0.24 | 5.7 | 94.0 | 0.3 | -6.69 | 0.74 | 0.77 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12168 | 1543 | 1 | 0 | 31 | 0 | 0 | logfile |