Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3J2P	5499	2023-07-05	2012-11-30	3.6	3.28	—	3.4	0.010	1.92	0.0	0.12	17.56	0.02	2.155	110.32	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.003	0.89	0.0	0.04	17.84	0.00	1.911	69.53	1.47	18.7	77.9	3.4	-4.26	0.93	0.38	0.72	0.85	9890	1134	8	0	6	0	1086	logfile
✔	7CYE	30498	2023-07-04	2020-09-03	3.54	3.31	—	3.7	0.010	1.42	0.0	0.07	12.31	0.01	2.232	4.09	1.30	12.4	87.0	0.6	-7.38	0.56	0.76	2.20	3.7	0.003	0.89	0.0	0.04	14.85	0.01	2.091	7.04	0.26	10.5	89.5	0.0	-2.91	0.86	0.60	0.81	2.82	7263	978	3	0	0	0	0	logfile
✘	7BSP	30163	2023-07-06	2020-03-31	4.0	4.12	—	4.0	0.005	0.66	0.0	0.04	13.90	0.01	1.928	53.93	0.00	14.6	85.4	0.0	-7.27	0.68	0.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11010	1352	5	0	5	0	0	logfile
✔	8GQY	34203	2023-07-05	2022-08-31	3.4	2.82	3.40	3.6	0.005	0.66	0.0	0.04	12.58	0.00	2.117	7.22	5.67	3.6	96.4	0.0	-7.14	0.69	0.86	3.37	3.6	0.003	0.65	0.0	0.04	15.11	0.00	2.171	7.06	0.70	1.8	98.2	0.0	-0.57	1.39	0.66	0.86	2.19	9515	1265	5	0	0	0	0	logfile
✘	7D61	30587	2023-07-12	2020-09-28	2.8	2.98	—	3.0	0.003	0.77	0.0	0.04	16.22	0.01	2.340	1.83	0.00	2.4	97.6	0.0	-7.13	0.69	0.82	2.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26664	3168	22	0	55	0	0	logfile
✔	6RJU	4906	2023-07-03	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	9.8	0.003	0.63	0.0	0.03	15.97	0.00	2.424	6.03	0.00	6.2	93.8	0.0	-0.13	1.31	0.27	0.05	0.48	1992	131	1	0	0	0	997	logfile
✔	7D65	30589	2023-07-12	2020-09-29	2.94	3.09	—	3.2	0.008	0.94	0.0	0.05	16.53	0.01	2.328	1.94	0.14	4.3	95.7	0.0	-7.00	0.66	0.81	2.37	3.2	0.003	0.65	0.0	0.04	17.17	0.00	2.195	4.80	1.93	1.9	98.1	0.0	-0.47	1.22	0.67	0.82	1.57	26664	3168	22	0	55	0	0	logfile
✔	7XQ2	33389	2023-07-03	2022-05-06	3.3	3.45	3.15	3.5	0.007	0.79	1.0	0.05	15.54	0.01	2.244	6.48	0.85	3.7	96.3	0.0	-6.96	0.56	0.83	4.29	3.5	0.003	0.58	0.0	0.04	16.35	0.00	2.217	8.10	0.00	3.0	97.0	0.0	0.34	2.06	0.44	0.78	3.44	3377	409	1	0	2	0	0	logfile
✔	6RoW	4975	2023-07-18	2019-05-13	4.5	4.52	4.16	4.2	0.016	1.50	0.0	0.07	14.46	0.01	1.848	49.61	0.00	30.3	68.7	1.0	-6.95	0.81	0.74	—	4.2	0.005	0.73	0.0	0.04	13.68	0.01	1.902	16.83	0.00	16.7	83.1	0.2	-3.08	1.48	0.82	0.74	—	43049	3129	7	0	0	0	20156	logfile
✔	7D60	30586	2023-07-12	2020-09-28	2.61	2.73	—	2.7	0.006	0.89	0.0	0.05	16.40	0.01	2.395	1.56	0.00	2.1	97.9	0.0	-6.95	0.70	0.83	2.76	2.7	0.002	0.59	0.0	0.03	17.69	0.00	2.194	3.75	1.83	2.6	97.4	0.0	0.99	0.52	0.69	0.84	2.11	26664	3168	22	0	55	0	0	logfile
✔	6PW5	20499	2023-07-11	2019-07-22	3.45	3.53	—	3.5	0.013	1.39	0.0	0.07	14.18	0.01	2.327	4.42	1.61	11.6	87.6	0.8	-6.95	0.76	0.85	3.30	3.5	0.005	0.77	0.0	0.04	16.46	0.00	2.174	9.65	0.80	9.5	90.2	0.4	-1.21	1.17	0.76	0.87	2.20	24740	3032	8	0	12	0	0	logfile
✔	6PW4	20498	2023-07-10	2019-07-22	3.53	3.64	—	3.6	0.008	1.14	0.0	0.05	17.20	0.01	2.302	5.63	0.38	10.7	89.3	0.1	-6.92	0.71	0.80	1.68	3.6	0.003	0.72	0.0	0.04	17.49	0.00	2.127	11.23	0.42	9.9	90.1	0.0	-1.43	0.56	0.70	0.78	1.07	22348	2742	8	0	10	0	0	logfile
✘	6PVN	20494	2023-07-10	2019-07-21	4.07	4.15	—	4.1	0.006	1.33	0.0	0.06	12.87	0.01	2.256	4.31	1.23	14.2	85.3	0.5	-6.84	0.68	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20874	2576	6	0	2	0	0	logfile
✔	7XQ1	33388	2023-07-03	2022-05-06	3.4	3.32	3.36	3.5	0.012	1.53	1.0	0.06	13.52	0.01	2.320	6.82	0.58	2.8	97.2	0.0	-6.81	0.47	0.78	3.56	3.5	0.003	0.62	0.0	0.04	15.87	0.00	2.120	8.80	0.00	2.3	97.7	0.0	0.66	1.19	0.50	0.81	1.80	3302	400	1	0	2	0	0	logfile
✔	6X3F	22021	2023-07-05	2020-05-21	3.03	3.23	—	3.3	0.006	0.93	0.0	0.06	14.72	0.01	2.351	3.78	0.00	5.0	95.0	0.0	-6.78	0.58	0.85	3.24	3.3	0.003	0.61	0.0	0.04	15.78	0.00	2.282	6.67	0.10	3.6	96.4	0.0	-0.25	0.95	0.53	0.84	2.06	9366	1227	6	0	3	0	0	logfile
✔	7XPZ	33386	2023-07-03	2022-05-06	3.4	3.31	3.34	3.6	0.005	0.73	0.0	0.05	12.26	0.01	2.311	6.57	0.58	5.5	94.5	0.0	-6.77	0.49	0.79	3.43	3.6	0.004	0.68	0.0	0.04	14.09	0.00	2.156	8.10	0.58	5.0	95.0	0.0	-0.80	1.17	0.43	0.76	2.59	3227	402	1	0	0	0	0	logfile
✔	7K4A	22662	2023-07-10	2020-09-15	3.26	3.68	—	3.7	0.013	1.44	0.0	0.06	14.78	0.01	2.263	3.83	0.52	10.5	89.4	0.2	-6.74	0.52	0.81	4.18	3.7	0.003	0.72	0.0	0.04	15.32	0.00	2.180	8.02	0.38	9.7	90.3	0.0	-2.20	1.34	0.62	0.86	2.52	20825	2420	8	0	65	0	0	logfile
✔	7XQ0	33387	2023-07-03	2022-05-06	3.0	2.77	3.09	3.2	0.018	1.35	0.0	0.05	13.28	0.01	2.232	7.04	0.86	1.5	98.5	0.0	-6.72	0.49	0.79	4.03	3.2	0.004	1.01	0.0	0.04	14.73	0.00	2.177	8.39	2.02	1.5	98.5	0.0	0.86	1.49	0.44	0.77	2.86	3320	402	1	0	2	0	0	logfile
✔	7D10	30542	2023-07-04	2020-09-12	3.52	3.70	—	3.7	0.007	1.05	0.0	0.06	10.87	0.01	2.249	4.93	0.00	8.9	90.6	0.5	-6.70	0.65	0.83	3.73	3.7	0.003	0.64	0.0	0.04	13.88	0.00	2.238	7.52	0.34	6.4	93.6	0.0	-1.75	1.20	0.63	0.83	2.64	6424	892	4	0	4	0	0	logfile
✘	6HYD	0308	2023-07-06	2018-10-19	3.9	4.01	—	4.0	0.004	0.85	0.0	0.05	9.33	0.01	2.319	2.63	0.24	5.7	94.0	0.3	-6.69	0.74	0.77	2.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12168	1543	1	0	31	0	0	logfile

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