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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8QJY | 18454 | 2023-12-08 | 2023-09-14 | 3.5 | 4.18 | 3.43 | 3.7 | 0.003 | 0.61 | 0.0 | 0.05 | 13.67 | 0.00 | 1.682 | 8.80 | 0.14 | 2.7 | 97.3 | 0.0 | -0.59 | 0.85 | 0.80 | 3.37 | 3.9 | 0.003 | 0.71 | 0.0 | 0.04 | 15.53 | 0.00 | 2.131 | 14.04 | 0.56 | 2.8 | 97.2 | 0.0 | -0.11 | 1.62 | 0.86 | 0.83 | 2.71 | 6287 | 798 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8QJJ | 18448 | 2023-12-08 | 2023-09-13 | 3.35 | 3.35 | 3.18 | 3.3 | 0.012 | 1.98 | 0.0 | 0.10 | 12.60 | 0.01 | 2.538 | 0.43 | 0.00 | 2.3 | 97.7 | 0.0 | -2.06 | 0.33 | 0.77 | 5.23 | 3.4 | 0.002 | 0.57 | 0.0 | 0.05 | 16.11 | 0.00 | 2.152 | 5.98 | 0.25 | 2.7 | 97.3 | 0.0 | -1.79 | 2.44 | 0.33 | 0.78 | 3.82 | 7032 | 450 | 6 | 0 | 0 | 0 | 3588 | logfile |
✔ | 8U4V | 41899 | 2023-12-08 | 2023-09-11 | 2.99 | 3.26 | 2.62 | 3.1 | 0.006 | 1.12 | 2.0 | 0.06 | 16.56 | 0.00 | 2.063 | 13.44 | 0.83 | 3.4 | 96.6 | 0.0 | 0.66 | 0.71 | 0.79 | 3.57 | 3.1 | 0.003 | 0.90 | 0.0 | 0.04 | 16.09 | 0.00 | 2.188 | 7.82 | 1.80 | 2.6 | 97.4 | 0.0 | 1.37 | 1.59 | 0.83 | 0.90 | 3.46 | 6637 | 862 | 8 | 0 | 1 | 3 | 0 | logfile |
✔ | 8WBX | 37426 | 2023-12-08 | 2023-09-10 | 3.23 | 3.53 | 3.23 | 3.5 | 0.003 | 0.66 | 0.0 | 0.04 | 16.96 | 0.00 | 2.305 | 10.08 | 0.38 | 1.6 | 98.4 | 0.0 | 1.77 | 0.48 | 0.63 | 1.04 | 3.5 | 0.003 | 0.66 | 0.0 | 0.04 | 16.18 | 0.00 | 2.219 | 11.09 | 0.76 | 2.6 | 97.4 | 0.0 | 1.55 | 0.60 | 0.49 | 0.66 | 1.09 | 7331 | 934 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 8WBA | 37418 | 2023-12-08 | 2023-09-09 | 3.1 | 3.27 | 3.07 | 3.3 | 0.002 | 0.54 | 0.0 | 0.04 | 16.65 | 0.00 | 2.289 | 9.38 | 0.32 | 1.6 | 98.4 | 0.0 | 1.56 | 0.62 | 0.79 | 2.30 | 3.3 | 0.004 | 0.59 | 0.0 | 0.04 | 16.81 | 0.00 | 2.180 | 10.12 | 0.53 | 2.2 | 97.8 | 0.0 | 1.61 | 0.31 | 0.61 | 0.80 | 2.21 | 8646 | 1106 | 3 | 0 | 2 | 0 | 0 | logfile |
✔ | 8QHP | 18415 | 2023-12-08 | 2023-09-08 | 2.8 | 3.49 | 2.82 | 3.3 | 0.002 | 0.38 | 0.0 | 0.04 | 11.64 | 0.00 | 2.176 | 6.09 | 0.00 | 1.0 | 99.0 | 0.0 | 1.77 | 0.76 | 0.86 | 4.14 | 3.3 | 0.003 | 0.52 | 0.0 | 0.04 | 14.64 | 0.00 | 2.158 | 6.98 | 0.98 | 1.2 | 98.8 | 0.0 | 2.46 | 0.86 | 0.74 | 0.85 | 3.32 | 6788 | 820 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 8WAM | 37397 | 2023-12-08 | 2023-09-07 | 3.23 | 3.48 | 3.24 | 3.5 | 0.002 | 0.45 | 0.0 | 0.04 | 17.90 | 0.00 | 2.211 | 5.64 | 0.11 | 1.7 | 98.3 | 0.0 | 1.70 | 0.60 | 0.77 | 1.11 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 17.54 | 0.00 | 1.982 | 6.16 | 0.32 | 3.1 | 96.9 | 0.0 | 1.06 | 0.41 | 0.59 | 0.78 | 1.56 | 8650 | 1102 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 8U2C | 41845 | 2023-12-10 | 2023-09-05 | 2.5 | 2.75 | 2.49 | 2.9 | 0.012 | 1.88 | 5.0 | 0.10 | 13.83 | 0.02 | 2.543 | 0.27 | 1.85 | 4.1 | 95.6 | 0.3 | -1.26 | 0.75 | 0.80 | 3.98 | 2.9 | 0.003 | 0.74 | 0.0 | 0.04 | 16.42 | 0.00 | 2.193 | 8.51 | 2.99 | 3.8 | 96.1 | 0.1 | 0.61 | 0.71 | 0.75 | 0.83 | 2.58 | 15042 | 1948 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 8QFS | 18383 | 2023-12-10 | 2023-09-04 | 2.7 | 2.85 | 2.64 | 2.7 | 0.006 | 0.65 | 0.0 | 0.04 | 19.93 | 0.02 | 1.966 | 7.90 | 4.62 | 3.1 | 96.8 | 0.1 | 1.82 | 0.85 | 0.89 | 3.35 | 2.7 | 0.003 | 0.70 | 0.0 | 0.04 | 19.91 | 0.01 | 1.855 | 7.27 | 4.46 | 3.2 | 96.6 | 0.1 | 2.04 | 0.23 | 0.85 | 0.90 | 3.31 | 13294 | 1576 | 4 | 61 | 2 | 0 | 0 | logfile |
✔ | 8U1o | 41819 | 2023-12-10 | 2023-09-01 | 3.4 | 2.61 | 3.67 | 3.4 | 0.005 | 1.00 | 0.0 | 0.06 | 16.71 | 0.01 | 2.225 | 12.44 | 0.92 | 7.7 | 92.0 | 0.4 | -2.51 | 0.56 | 0.72 | 1.67 | 3.4 | 0.003 | 0.84 | 0.0 | 0.05 | 17.02 | 0.00 | 2.124 | 23.77 | 0.74 | 7.9 | 91.8 | 0.3 | -2.50 | 0.49 | 0.57 | 0.74 | 1.58 | 15096 | 1989 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8W8A | 37350 | 2023-12-08 | 2023-09-01 | 2.8 | 3.15 | 2.86 | 3.1 | 0.006 | 0.72 | 1.0 | 0.05 | 12.97 | 0.00 | 2.280 | 5.44 | 0.89 | 2.8 | 97.2 | 0.0 | 0.81 | 0.63 | 0.84 | 4.00 | 3.1 | 0.004 | 0.57 | 0.0 | 0.04 | 15.80 | 0.00 | 2.124 | 6.97 | 1.68 | 2.2 | 97.8 | 0.0 | 1.18 | 0.39 | 0.62 | 0.86 | 3.62 | 8260 | 1045 | 6 | 0 | 1 | 1 | 0 | logfile |
✔ | 8U1K | 41815 | 2023-12-07 | 2023-09-01 | 3.5 | 2.89 | 2.72 | 2.8 | 0.004 | 0.61 | 0.0 | 0.04 | 13.64 | 0.00 | 2.206 | 12.32 | 3.33 | 2.3 | 97.7 | 0.0 | -5.99 | 0.45 | 0.75 | 1.99 | 2.8 | 0.003 | 0.81 | 0.0 | 0.04 | 15.78 | 0.00 | 2.150 | 14.98 | 3.33 | 5.6 | 94.4 | 0.0 | -4.80 | 0.94 | 0.46 | 0.74 | 2.82 | 3060 | 450 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 8W8B | 37351 | 2023-12-08 | 2023-09-01 | 3.0 | 3.35 | 3.12 | 3.3 | 0.003 | 0.53 | 0.0 | 0.04 | 14.54 | 0.00 | 2.063 | 4.34 | 0.54 | 2.3 | 97.7 | 0.0 | 1.35 | 0.67 | 0.86 | 3.99 | 3.3 | 0.002 | 0.50 | 0.0 | 0.04 | 15.23 | 0.00 | 2.102 | 5.25 | 1.07 | 2.1 | 97.9 | 0.0 | 1.73 | 0.33 | 0.64 | 0.85 | 3.10 | 8734 | 1096 | 6 | 0 | 7 | 0 | 0 | logfile |
✔ | 8W87 | 37347 | 2023-12-08 | 2023-09-01 | 2.8 | 3.17 | 2.93 | 3.2 | 0.003 | 0.56 | 0.0 | 0.04 | 15.67 | 0.01 | 2.193 | 3.86 | 0.45 | 1.9 | 98.1 | 0.0 | 1.49 | 0.60 | 0.86 | 3.88 | 3.2 | 0.003 | 0.52 | 0.0 | 0.04 | 16.28 | 0.00 | 2.227 | 5.39 | 2.48 | 1.8 | 98.2 | 0.0 | 1.19 | 0.37 | 0.53 | 0.82 | 3.57 | 8228 | 1045 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 8W88 | 37348 | 2023-12-08 | 2023-09-01 | 2.6 | 2.99 | 2.75 | 2.9 | 0.005 | 0.59 | 0.0 | 0.04 | 14.74 | 0.01 | 2.143 | 4.00 | 0.34 | 2.7 | 97.3 | 0.0 | 1.00 | 0.71 | 0.87 | 4.27 | 3.0 | 0.002 | 0.49 | 0.0 | 0.04 | 15.78 | 0.00 | 2.243 | 6.15 | 1.79 | 1.8 | 98.2 | 0.0 | 1.52 | 0.50 | 0.60 | 0.85 | 3.56 | 8307 | 1039 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 8W89 | 37349 | 2023-12-08 | 2023-09-01 | 3.0 | 3.35 | 3.11 | 3.3 | 0.006 | 0.83 | 0.0 | 0.06 | 13.33 | 0.00 | 2.334 | 4.90 | 0.90 | 3.4 | 96.6 | 0.0 | 0.85 | 0.63 | 0.81 | 2.98 | 3.3 | 0.003 | 0.57 | 0.0 | 0.04 | 15.85 | 0.00 | 2.120 | 8.21 | 1.57 | 2.2 | 97.8 | 0.0 | 0.77 | 0.97 | 0.62 | 0.82 | 2.54 | 8230 | 1043 | 6 | 0 | 1 | 1 | 0 | logfile |
✔ | 8QEE | 18353 | 2023-12-10 | 2023-08-31 | 2.43 | 2.62 | 2.45 | 2.7 | 0.002 | 0.45 | 0.0 | 0.04 | 17.85 | 0.00 | 2.021 | 4.01 | 2.15 | 1.7 | 98.3 | 0.0 | 2.41 | 0.61 | 0.81 | 4.25 | 2.7 | 0.003 | 0.51 | 0.0 | 0.04 | 16.98 | 0.00 | 1.999 | 6.01 | 2.42 | 1.7 | 98.2 | 0.1 | 2.21 | 0.71 | 0.62 | 0.81 | 3.62 | 13746 | 823 | 3 | 0 | 6 | 130 | 6889 | logfile |
✔ | 8U0T | 41784 | 2023-12-08 | 2023-08-29 | 3.2 | 3.49 | 3.24 | 3.5 | 0.013 | 1.40 | 2.0 | 0.09 | 10.78 | 0.01 | 2.291 | 1.69 | 0.47 | 2.7 | 97.1 | 0.1 | -1.05 | 0.70 | 0.79 | 4.40 | 3.5 | 0.002 | 0.59 | 0.0 | 0.04 | 13.63 | 0.00 | 2.251 | 4.16 | 0.16 | 2.0 | 98.0 | 0.0 | 1.11 | 0.58 | 0.70 | 0.83 | 3.00 | 6761 | 849 | 4 | 0 | 10 | 0 | 0 | logfile |
✔ | 8QCR | 18333 | 2023-12-07 | 2023-08-28 | 2.75 | 2.70 | 2.59 | 2.9 | 0.011 | 1.78 | 0.0 | 0.08 | 9.60 | 0.01 | 2.505 | 0.00 | 0.00 | 3.0 | 97.0 | 0.0 | -1.85 | 0.33 | 0.79 | 7.24 | 2.9 | 0.003 | 0.55 | 0.0 | 0.05 | 16.55 | 0.00 | 2.259 | 4.44 | 0.00 | 0.5 | 99.5 | 0.0 | -0.46 | 2.21 | 0.40 | 0.88 | 7.57 | 3153 | 204 | 3 | 0 | 0 | 0 | 1608 | logfile |
✔ | 8QCP | 18331 | 2023-12-08 | 2023-08-28 | 3.21 | 3.22 | 3.18 | 3.3 | 0.011 | 1.86 | 1.0 | 0.09 | 11.52 | 0.01 | 2.543 | 0.00 | 0.00 | 7.5 | 92.5 | 0.0 | -2.03 | 0.31 | 0.78 | 5.53 | 3.3 | 0.004 | 0.62 | 0.0 | 0.05 | 16.11 | 0.00 | 2.194 | 2.43 | 0.00 | 4.1 | 95.9 | 0.0 | -2.16 | 2.98 | 0.34 | 0.86 | 5.67 | 7002 | 453 | 6 | 0 | 0 | 0 | 3567 | logfile |