Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MXP	24075	2023-02-28	2021-05-19	4.46	8.21	—	4.5	0.009	1.45	7.0	0.08	14.72	0.01	2.280	7.97	0.23	8.5	91.3	0.2	-3.74	0.89	0.80	—	4.5	0.003	0.70	0.0	0.04	13.65	0.00	2.120	23.16	0.00	8.9	91.1	0.0	-2.13	1.18	0.89	0.82	—	31664	3967	19	0	61	0	0	logfile
✔	7N8Y	24249	2023-02-28	2021-06-16	3.65	3.83	—	3.8	0.005	0.98	0.0	0.06	14.98	0.01	2.293	8.21	0.69	8.9	90.9	0.3	-5.05	0.70	0.73	1.55	3.8	0.003	0.67	0.0	0.04	16.22	0.00	1.997	11.09	0.46	9.4	90.6	0.0	-2.57	0.60	0.70	0.75	1.16	16162	2074	4	0	0	0	0	logfile
✔	7UAP	26429	2023-02-28	2022-03-13	2.8	2.98	2.85	3.0	0.007	1.25	12.0	0.07	13.61	0.01	2.041	19.84	0.29	7.1	92.4	0.6	-2.28	0.64	0.65	1.45	3.0	0.004	0.79	0.0	0.05	16.11	0.00	2.097	13.13	3.25	7.4	92.4	0.2	-1.50	1.91	0.67	0.77	1.92	31657	3957	27	0	59	0	0	logfile
✔	6MHo	9115	2023-02-28	2018-09-18	3.4	3.50	3.41	3.5	0.005	0.72	0.0	0.04	7.36	0.00	2.108	2.84	0.00	2.7	97.3	0.0	-2.41	0.66	0.76	3.45	3.4	0.003	0.55	0.0	0.03	12.70	0.00	2.003	6.04	0.14	4.5	95.5	0.0	0.98	2.46	0.68	0.81	3.70	32224	2404	4	0	0	0	15184	logfile
✔	8DZH	27798	2023-02-28	2022-08-07	3.2	4.76	3.29	2.8	0.010	0.87	1.0	0.06	18.79	0.01	1.642	18.50	0.26	5.3	94.5	0.2	-0.03	0.86	0.86	1.74	2.5	0.010	0.84	0.0	0.05	18.87	0.00	1.643	18.44	0.20	5.6	94.1	0.2	-0.12	0.35	0.87	0.89	1.70	31956	3966	39	0	73	0	0	logfile
✔	7W6T	32335	2023-02-28	2021-12-02	3.85	4.45	—	3.9	0.006	0.87	0.0	0.05	14.59	0.01	2.034	32.65	0.29	10.7	89.2	0.1	-4.74	0.64	0.67	0.30	3.9	0.004	0.79	0.0	0.04	16.11	0.00	2.058	24.84	0.40	7.6	92.4	0.0	-1.69	1.26	0.63	0.64	0.17	31768	3934	10	0	0	0	0	logfile
✘	8DDU	27342	2023-02-28	2022-06-19	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32230	3872	12	0	82	0	0	logfile
✘	8DDV	27343	2023-02-28	2022-06-19	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32230	3872	12	0	82	0	0	logfile
✘	8DDT	27341	2023-02-28	2022-06-18	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32229	3872	12	0	81	0	0	logfile
✔	6oUL	20203	2023-02-28	2019-05-04	3.4	3.56	—	3.6	0.015	1.19	0.0	0.06	14.87	0.01	2.011	34.20	0.31	12.2	87.6	0.3	-4.17	0.68	0.79	2.67	3.6	0.003	0.65	0.0	0.04	17.69	0.00	2.092	10.70	0.37	6.0	93.9	0.1	-0.55	1.97	0.68	0.83	1.24	31927	3751	12	117	6	0	0	logfile
✔	6PST	20463	2023-02-28	2019-07-13	3.0	3.10	—	3.1	0.011	0.91	0.0	0.05	19.37	0.01	1.777	36.23	13.13	8.0	91.7	0.3	-3.42	0.70	0.82	2.00	3.1	0.004	0.72	0.0	0.04	20.26	0.00	2.063	12.92	6.61	5.6	94.3	0.1	-0.41	1.50	0.71	0.84	1.70	31452	3726	13	101	8	0	0	logfile
✔	5Y81	6816	2023-02-28	2017-08-18	4.7	4.77	—	4.6	0.012	1.24	3.0	0.06	11.53	0.01	1.581	41.26	14.19	15.5	79.2	5.3	-5.73	0.66	0.69	—	4.6	0.003	0.72	0.0	0.04	9.83	0.00	2.062	10.61	0.10	9.3	89.7	1.0	0.85	0.83	0.70	0.73	—	25723	4095	8	0	360	0	0	logfile
✔	6VBV	21145	2023-02-28	2019-12-19	3.5	3.57	3.40	3.5	0.004	0.71	6.0	0.05	15.13	0.00	2.070	12.77	0.72	7.2	92.7	0.1	-3.09	0.67	0.77	2.13	3.5	0.003	0.68	0.0	0.04	16.92	0.00	2.108	11.81	0.34	6.5	93.5	0.0	-0.88	2.56	0.70	0.79	1.77	31676	4000	11	0	3	0	0	logfile
✔	7MJJ	23875	2023-02-28	2021-04-20	3.32	4.04	—	3.5	0.004	0.73	0.0	0.05	12.82	0.01	2.278	3.23	0.00	3.2	96.8	0.0	-0.70	0.84	0.81	1.90	3.5	0.003	0.59	0.0	0.04	14.44	0.00	2.034	9.53	0.17	2.6	97.4	0.0	0.49	1.26	0.85	0.84	1.79	31680	3968	28	0	60	0	0	logfile
✘	6YP7	10865	2023-02-28	2020-04-15	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	71784	7002	77	0	325	0	0	logfile
✔	7WE7	32441	2023-02-28	2021-12-23	3.8	4.19	—	3.9	0.005	0.71	2.0	0.05	13.58	0.00	1.378	12.84	0.87	5.0	94.9	0.1	-1.30	0.84	0.78	1.49	3.9	0.003	0.61	0.0	0.04	14.99	0.00	2.073	14.09	0.20	5.2	94.8	0.1	-0.96	0.44	0.85	0.81	1.24	32095	3981	33	0	74	0	0	logfile
✔	6UD4	20733	2023-02-28	2019-09-18	3.3	3.63	—	3.5	0.008	0.63	0.0	0.06	13.23	0.01	2.022	6.34	0.12	5.2	94.8	0.0	-3.11	0.65	0.74	1.46	3.5	0.002	0.53	0.0	0.05	14.37	0.00	2.001	8.39	0.24	4.1	95.9	0.0	0.74	1.77	0.66	0.75	1.76	31642	2044	15	0	12	0	15470	logfile
✔	8ABL	15325	2023-02-28	2022-07-04	2.1	2.00	2.04	2.0	0.010	1.69	34.0	0.11	17.94	0.01	2.060	2.82	4.41	2.2	97.8	0.0	-0.94	0.73	0.90	6.29	2.0	0.003	0.57	0.0	0.04	17.41	0.00	2.188	4.24	1.06	1.3	98.7	0.0	2.13	1.31	0.74	0.90	5.67	31660	3878	33	0	32	0	0	logfile
✔	7RW2	24708	2023-02-28	2021-08-19	3.5	3.76	3.53	3.8	0.005	0.95	9.0	0.07	13.38	0.01	2.254	6.35	0.03	3.6	96.4	0.0	-1.51	0.71	0.70	1.71	3.7	0.004	0.68	0.0	0.05	15.60	0.00	2.171	11.41	0.41	5.0	95.0	0.0	-1.12	1.29	0.74	0.76	1.70	31614	3951	18	0	60	0	0	logfile
✘	6PNJ	20397	2023-02-28	2019-07-02	3.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	71511	6660	60	0	420	0	0	logfile

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