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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7MXP | 24075 | 2023-02-28 | 2021-05-19 | 4.46 | 8.21 | — | 4.5 | 0.009 | 1.45 | 7.0 | 0.08 | 14.72 | 0.01 | 2.280 | 7.97 | 0.23 | 8.5 | 91.3 | 0.2 | -3.74 | 0.89 | 0.80 | — | 4.5 | 0.003 | 0.70 | 0.0 | 0.04 | 13.65 | 0.00 | 2.120 | 23.16 | 0.00 | 8.9 | 91.1 | 0.0 | -2.13 | 1.18 | 0.89 | 0.82 | — | 31664 | 3967 | 19 | 0 | 61 | 0 | 0 | logfile |
✔ | 7N8Y | 24249 | 2023-02-28 | 2021-06-16 | 3.65 | 3.83 | — | 3.8 | 0.005 | 0.98 | 0.0 | 0.06 | 14.98 | 0.01 | 2.293 | 8.21 | 0.69 | 8.9 | 90.9 | 0.3 | -5.05 | 0.70 | 0.73 | 1.55 | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 16.22 | 0.00 | 1.997 | 11.09 | 0.46 | 9.4 | 90.6 | 0.0 | -2.57 | 0.60 | 0.70 | 0.75 | 1.16 | 16162 | 2074 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UAP | 26429 | 2023-02-28 | 2022-03-13 | 2.8 | 2.98 | 2.85 | 3.0 | 0.007 | 1.25 | 12.0 | 0.07 | 13.61 | 0.01 | 2.041 | 19.84 | 0.29 | 7.1 | 92.4 | 0.6 | -2.28 | 0.64 | 0.65 | 1.45 | 3.0 | 0.004 | 0.79 | 0.0 | 0.05 | 16.11 | 0.00 | 2.097 | 13.13 | 3.25 | 7.4 | 92.4 | 0.2 | -1.50 | 1.91 | 0.67 | 0.77 | 1.92 | 31657 | 3957 | 27 | 0 | 59 | 0 | 0 | logfile |
✔ | 6MHo | 9115 | 2023-02-28 | 2018-09-18 | 3.4 | 3.50 | 3.41 | 3.5 | 0.005 | 0.72 | 0.0 | 0.04 | 7.36 | 0.00 | 2.108 | 2.84 | 0.00 | 2.7 | 97.3 | 0.0 | -2.41 | 0.66 | 0.76 | 3.45 | 3.4 | 0.003 | 0.55 | 0.0 | 0.03 | 12.70 | 0.00 | 2.003 | 6.04 | 0.14 | 4.5 | 95.5 | 0.0 | 0.98 | 2.46 | 0.68 | 0.81 | 3.70 | 32224 | 2404 | 4 | 0 | 0 | 0 | 15184 | logfile |
✔ | 8DZH | 27798 | 2023-02-28 | 2022-08-07 | 3.2 | 4.76 | 3.29 | 2.8 | 0.010 | 0.87 | 1.0 | 0.06 | 18.79 | 0.01 | 1.642 | 18.50 | 0.26 | 5.3 | 94.5 | 0.2 | -0.03 | 0.86 | 0.86 | 1.74 | 2.5 | 0.010 | 0.84 | 0.0 | 0.05 | 18.87 | 0.00 | 1.643 | 18.44 | 0.20 | 5.6 | 94.1 | 0.2 | -0.12 | 0.35 | 0.87 | 0.89 | 1.70 | 31956 | 3966 | 39 | 0 | 73 | 0 | 0 | logfile |
✔ | 7W6T | 32335 | 2023-02-28 | 2021-12-02 | 3.85 | 4.45 | — | 3.9 | 0.006 | 0.87 | 0.0 | 0.05 | 14.59 | 0.01 | 2.034 | 32.65 | 0.29 | 10.7 | 89.2 | 0.1 | -4.74 | 0.64 | 0.67 | 0.30 | 3.9 | 0.004 | 0.79 | 0.0 | 0.04 | 16.11 | 0.00 | 2.058 | 24.84 | 0.40 | 7.6 | 92.4 | 0.0 | -1.69 | 1.26 | 0.63 | 0.64 | 0.17 | 31768 | 3934 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 8DDU | 27342 | 2023-02-28 | 2022-06-19 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32230 | 3872 | 12 | 0 | 82 | 0 | 0 | logfile |
✘ | 8DDV | 27343 | 2023-02-28 | 2022-06-19 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32230 | 3872 | 12 | 0 | 82 | 0 | 0 | logfile |
✘ | 8DDT | 27341 | 2023-02-28 | 2022-06-18 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32229 | 3872 | 12 | 0 | 81 | 0 | 0 | logfile |
✔ | 6oUL | 20203 | 2023-02-28 | 2019-05-04 | 3.4 | 3.56 | — | 3.6 | 0.015 | 1.19 | 0.0 | 0.06 | 14.87 | 0.01 | 2.011 | 34.20 | 0.31 | 12.2 | 87.6 | 0.3 | -4.17 | 0.68 | 0.79 | 2.67 | 3.6 | 0.003 | 0.65 | 0.0 | 0.04 | 17.69 | 0.00 | 2.092 | 10.70 | 0.37 | 6.0 | 93.9 | 0.1 | -0.55 | 1.97 | 0.68 | 0.83 | 1.24 | 31927 | 3751 | 12 | 117 | 6 | 0 | 0 | logfile |
✔ | 6PST | 20463 | 2023-02-28 | 2019-07-13 | 3.0 | 3.10 | — | 3.1 | 0.011 | 0.91 | 0.0 | 0.05 | 19.37 | 0.01 | 1.777 | 36.23 | 13.13 | 8.0 | 91.7 | 0.3 | -3.42 | 0.70 | 0.82 | 2.00 | 3.1 | 0.004 | 0.72 | 0.0 | 0.04 | 20.26 | 0.00 | 2.063 | 12.92 | 6.61 | 5.6 | 94.3 | 0.1 | -0.41 | 1.50 | 0.71 | 0.84 | 1.70 | 31452 | 3726 | 13 | 101 | 8 | 0 | 0 | logfile |
✔ | 5Y81 | 6816 | 2023-02-28 | 2017-08-18 | 4.7 | 4.77 | — | 4.6 | 0.012 | 1.24 | 3.0 | 0.06 | 11.53 | 0.01 | 1.581 | 41.26 | 14.19 | 15.5 | 79.2 | 5.3 | -5.73 | 0.66 | 0.69 | — | 4.6 | 0.003 | 0.72 | 0.0 | 0.04 | 9.83 | 0.00 | 2.062 | 10.61 | 0.10 | 9.3 | 89.7 | 1.0 | 0.85 | 0.83 | 0.70 | 0.73 | — | 25723 | 4095 | 8 | 0 | 360 | 0 | 0 | logfile |
✔ | 6VBV | 21145 | 2023-02-28 | 2019-12-19 | 3.5 | 3.57 | 3.40 | 3.5 | 0.004 | 0.71 | 6.0 | 0.05 | 15.13 | 0.00 | 2.070 | 12.77 | 0.72 | 7.2 | 92.7 | 0.1 | -3.09 | 0.67 | 0.77 | 2.13 | 3.5 | 0.003 | 0.68 | 0.0 | 0.04 | 16.92 | 0.00 | 2.108 | 11.81 | 0.34 | 6.5 | 93.5 | 0.0 | -0.88 | 2.56 | 0.70 | 0.79 | 1.77 | 31676 | 4000 | 11 | 0 | 3 | 0 | 0 | logfile |
✔ | 7MJJ | 23875 | 2023-02-28 | 2021-04-20 | 3.32 | 4.04 | — | 3.5 | 0.004 | 0.73 | 0.0 | 0.05 | 12.82 | 0.01 | 2.278 | 3.23 | 0.00 | 3.2 | 96.8 | 0.0 | -0.70 | 0.84 | 0.81 | 1.90 | 3.5 | 0.003 | 0.59 | 0.0 | 0.04 | 14.44 | 0.00 | 2.034 | 9.53 | 0.17 | 2.6 | 97.4 | 0.0 | 0.49 | 1.26 | 0.85 | 0.84 | 1.79 | 31680 | 3968 | 28 | 0 | 60 | 0 | 0 | logfile |
✘ | 6YP7 | 10865 | 2023-02-28 | 2020-04-15 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71784 | 7002 | 77 | 0 | 325 | 0 | 0 | logfile |
✔ | 7WE7 | 32441 | 2023-02-28 | 2021-12-23 | 3.8 | 4.19 | — | 3.9 | 0.005 | 0.71 | 2.0 | 0.05 | 13.58 | 0.00 | 1.378 | 12.84 | 0.87 | 5.0 | 94.9 | 0.1 | -1.30 | 0.84 | 0.78 | 1.49 | 3.9 | 0.003 | 0.61 | 0.0 | 0.04 | 14.99 | 0.00 | 2.073 | 14.09 | 0.20 | 5.2 | 94.8 | 0.1 | -0.96 | 0.44 | 0.85 | 0.81 | 1.24 | 32095 | 3981 | 33 | 0 | 74 | 0 | 0 | logfile |
✔ | 6UD4 | 20733 | 2023-02-28 | 2019-09-18 | 3.3 | 3.63 | — | 3.5 | 0.008 | 0.63 | 0.0 | 0.06 | 13.23 | 0.01 | 2.022 | 6.34 | 0.12 | 5.2 | 94.8 | 0.0 | -3.11 | 0.65 | 0.74 | 1.46 | 3.5 | 0.002 | 0.53 | 0.0 | 0.05 | 14.37 | 0.00 | 2.001 | 8.39 | 0.24 | 4.1 | 95.9 | 0.0 | 0.74 | 1.77 | 0.66 | 0.75 | 1.76 | 31642 | 2044 | 15 | 0 | 12 | 0 | 15470 | logfile |
✔ | 8ABL | 15325 | 2023-02-28 | 2022-07-04 | 2.1 | 2.00 | 2.04 | 2.0 | 0.010 | 1.69 | 34.0 | 0.11 | 17.94 | 0.01 | 2.060 | 2.82 | 4.41 | 2.2 | 97.8 | 0.0 | -0.94 | 0.73 | 0.90 | 6.29 | 2.0 | 0.003 | 0.57 | 0.0 | 0.04 | 17.41 | 0.00 | 2.188 | 4.24 | 1.06 | 1.3 | 98.7 | 0.0 | 2.13 | 1.31 | 0.74 | 0.90 | 5.67 | 31660 | 3878 | 33 | 0 | 32 | 0 | 0 | logfile |
✔ | 7RW2 | 24708 | 2023-02-28 | 2021-08-19 | 3.5 | 3.76 | 3.53 | 3.8 | 0.005 | 0.95 | 9.0 | 0.07 | 13.38 | 0.01 | 2.254 | 6.35 | 0.03 | 3.6 | 96.4 | 0.0 | -1.51 | 0.71 | 0.70 | 1.71 | 3.7 | 0.004 | 0.68 | 0.0 | 0.05 | 15.60 | 0.00 | 2.171 | 11.41 | 0.41 | 5.0 | 95.0 | 0.0 | -1.12 | 1.29 | 0.74 | 0.76 | 1.70 | 31614 | 3951 | 18 | 0 | 60 | 0 | 0 | logfile |
✘ | 6PNJ | 20397 | 2023-02-28 | 2019-07-02 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71511 | 6660 | 60 | 0 | 420 | 0 | 0 | logfile |