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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6oUo | 20204 | 2023-08-30 | 2019-05-05 | 3.7 | 4.99 | — | 3.3 | 0.007 | 0.84 | 1.0 | 0.04 | 15.90 | 0.02 | 1.584 | 12.06 | 0.36 | 5.1 | 94.8 | 0.1 | -3.86 | 0.89 | 0.75 | 0.10 | 3.3 | 0.004 | 0.76 | 1.0 | 0.04 | 17.05 | 0.01 | 1.854 | 33.75 | 0.75 | 5.7 | 94.3 | 0.0 | -1.64 | 2.62 | 0.92 | 0.84 | 0.47 | 146867 | 6028 | 61 | 4642 | 14 | 0 | 0 | logfile |
✔ | 6ENJ | 3899 | 2023-08-30 | 2017-10-05 | 3.7 | 3.76 | — | 3.7 | 0.003 | 0.61 | 0.0 | 0.03 | 14.08 | 0.01 | 1.234 | 4.06 | 0.06 | 8.4 | 91.3 | 0.3 | -4.96 | 0.77 | 0.77 | 1.43 | 3.7 | 0.007 | 0.84 | 0.0 | 0.04 | 16.60 | 0.01 | 2.028 | 18.23 | 1.34 | 12.8 | 86.9 | 0.3 | -3.13 | 1.77 | 0.80 | 0.81 | 1.43 | 147111 | 5950 | 56 | 4693 | 0 | 0 | 0 | logfile |
✔ | 7YEV | 33778 | 2023-08-30 | 2022-07-06 | 3.6 | 3.85 | 3.59 | 3.8 | 0.006 | 1.01 | 3.0 | 0.07 | 9.92 | 0.01 | 1.289 | 5.98 | 0.18 | 6.9 | 93.0 | 0.1 | -3.55 | 0.52 | 0.85 | 2.42 | 3.8 | 0.003 | 0.69 | 1.0 | 0.04 | 14.22 | 0.00 | 2.076 | 10.38 | 0.44 | 5.2 | 94.8 | 0.0 | -0.33 | 0.65 | 0.53 | 0.86 | 1.88 | 146393 | 18559 | 35 | 0 | 18 | 0 | 0 | logfile |
✔ | 6GXP | 0083 | 2023-08-30 | 2018-06-27 | 4.4 | 5.60 | — | 5.1 | 0.003 | 0.80 | 6.0 | 0.04 | 14.00 | 0.01 | 1.608 | 5.45 | 0.27 | 8.3 | 91.2 | 0.5 | -4.12 | 0.84 | 0.79 | — | 5.0 | 0.005 | 0.74 | 0.0 | 0.04 | 16.15 | 0.01 | 1.967 | 36.94 | 0.02 | 11.1 | 88.7 | 0.1 | -2.14 | 1.96 | 0.87 | 0.85 | — | 147637 | 6392 | 56 | 4555 | 1 | 0 | 0 | logfile |
✔ | 7LV0 | 23528 | 2023-08-30 | 2021-02-23 | 3.2 | 3.59 | — | 3.2 | 0.012 | 1.25 | 0.0 | 0.10 | 15.70 | 0.02 | 1.414 | 29.31 | 3.83 | 19.0 | 79.0 | 2.0 | -4.79 | 0.81 | 0.82 | 1.87 | 3.2 | 0.004 | 0.71 | 0.0 | 0.04 | 16.41 | 0.01 | 2.025 | 16.84 | 0.98 | 13.7 | 86.2 | 0.1 | -2.71 | 0.50 | 0.81 | 0.83 | 1.17 | 147330 | 5851 | 60 | 4734 | 0 | 0 | 0 | logfile |
✔ | 6oT3 | 20193 | 2023-08-30 | 2019-05-02 | 3.9 | 5.27 | — | 3.3 | 0.007 | 0.84 | 2.0 | 0.04 | 15.90 | 0.02 | 1.940 | 11.90 | 0.28 | 5.0 | 94.9 | 0.1 | -3.85 | 0.92 | 0.88 | 0.62 | 3.3 | 0.005 | 0.74 | 0.0 | 0.04 | 16.73 | 0.01 | 1.810 | 32.91 | 0.85 | 6.5 | 93.5 | 0.0 | -1.71 | 1.78 | 0.92 | 0.88 | 0.48 | 146899 | 6031 | 62 | 4642 | 14 | 0 | 0 | logfile |
✘ | 5X8P | 6709 | 2023-08-30 | 2017-03-03 | 3.4 | 3.42 | — | 3.4 | 0.008 | 1.05 | 8.0 | 0.05 | 14.94 | 0.01 | 1.051 | 8.93 | 0.76 | 10.9 | 88.5 | 0.6 | -4.53 | 0.78 | 0.75 | 1.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 147126 | 6323 | 58 | 4508 | 0 | 0 | 0 | logfile |
✔ | 7SSW | 25415 | 2023-08-30 | 2021-11-11 | 3.8 | 3.98 | 4.43 | 3.9 | 0.008 | 1.03 | 0.0 | 0.09 | 15.74 | 0.01 | 1.525 | 13.50 | 0.87 | 14.4 | 85.2 | 0.4 | -5.23 | 0.77 | 0.73 | 0.84 | 3.9 | 0.008 | 0.97 | 0.0 | 0.05 | 18.08 | 0.01 | 1.899 | 33.29 | 1.77 | 16.9 | 82.8 | 0.2 | -3.69 | 1.33 | 0.78 | 0.74 | 0.76 | 147596 | 5885 | 56 | 4736 | 0 | 0 | 0 | logfile |
✔ | 6WD1 | 21620 | 2023-08-30 | 2020-03-31 | 3.3 | 3.61 | 3.63 | 3.4 | 0.006 | 0.94 | 0.0 | 0.08 | 13.39 | 0.01 | 2.219 | 11.79 | 0.55 | 10.6 | 87.9 | 1.5 | -5.05 | 0.82 | 0.83 | 1.64 | 3.4 | 0.005 | 0.68 | 0.0 | 0.04 | 15.58 | 0.00 | 2.015 | 18.97 | 0.77 | 9.9 | 89.9 | 0.1 | -2.20 | 0.68 | 0.83 | 0.85 | 1.26 | 146942 | 6023 | 56 | 4657 | 0 | 0 | 0 | logfile |
✔ | 6SZS | 10353 | 2023-08-30 | 2019-10-02 | 3.06 | 3.27 | — | 3.2 | 0.008 | 0.93 | 1.0 | 0.05 | 15.95 | 0.01 | 2.211 | 4.87 | 0.56 | 7.5 | 92.5 | 0.1 | -3.63 | 0.88 | 0.85 | 2.68 | 3.2 | 0.006 | 0.67 | 1.0 | 0.04 | 16.16 | 0.00 | 2.028 | 12.17 | 0.73 | 7.9 | 92.0 | 0.1 | -1.15 | 0.32 | 0.89 | 0.87 | 2.21 | 147361 | 6100 | 56 | 4646 | 0 | 0 | 0 | logfile |
✔ | 6YLG | 10838 | 2023-08-30 | 2020-04-07 | 3.0 | 3.12 | 3.00 | 3.0 | 0.004 | 0.87 | 18.0 | 0.08 | 16.78 | 0.01 | 1.432 | 4.86 | 0.17 | 6.8 | 92.8 | 0.4 | -2.93 | 0.80 | 0.87 | 3.34 | 3.0 | 0.004 | 0.63 | 0.0 | 0.04 | 17.28 | 0.00 | 1.806 | 8.48 | 4.14 | 6.8 | 93.1 | 0.1 | -0.45 | 0.49 | 0.81 | 0.90 | 2.86 | 147190 | 9666 | 61 | 3310 | 8 | 0 | 0 | logfile |
✔ | 7P7S | 13243 | 2023-08-30 | 2021-07-20 | 3.0 | 3.49 | 2.93 | 2.0 | 0.005 | 0.47 | 0.0 | 0.05 | 14.02 | 0.00 | 1.782 | 5.59 | 0.78 | 2.6 | 97.4 | 0.0 | 0.77 | 0.89 | 0.91 | 3.48 | 2.0 | 0.006 | 0.63 | 0.0 | 0.04 | 14.64 | 0.00 | 1.833 | 11.62 | 2.00 | 3.3 | 96.7 | 0.0 | 0.58 | 0.40 | 0.90 | 0.91 | 3.09 | 147573 | 6097 | 68 | 4625 | 349 | 0 | 0 | logfile |
✔ | 7oBR | 12801 | 2023-08-30 | 2021-04-23 | 2.8 | 2.88 | — | 2.9 | 0.002 | 0.49 | 1.0 | 0.03 | 15.19 | 0.00 | 1.835 | 8.03 | 2.55 | 4.6 | 95.3 | 0.0 | 0.58 | 0.61 | 0.80 | 2.85 | 2.8 | 0.004 | 0.68 | 0.0 | 0.04 | 17.37 | 0.01 | 1.834 | 9.58 | 3.96 | 5.9 | 94.0 | 0.1 | -0.12 | 1.21 | 0.65 | 0.86 | 3.11 | 146701 | 7484 | 60 | 4019 | 102 | 0 | 0 | logfile |
✔ | 7oJ0 | 12937 | 2023-08-29 | 2021-05-13 | 3.5 | 3.49 | — | 3.3 | 0.006 | 0.84 | 1.0 | 0.04 | 14.16 | 0.02 | 1.995 | 7.15 | 0.16 | 4.4 | 95.5 | 0.1 | -1.32 | 0.87 | 0.88 | 2.11 | 3.3 | 0.004 | 0.70 | 0.0 | 0.04 | 14.86 | 0.01 | 1.827 | 15.59 | 0.95 | 5.1 | 94.8 | 0.1 | -0.70 | 0.39 | 0.87 | 0.88 | 1.70 | 146507 | 6266 | 66 | 4525 | 310 | 0 | 0 | logfile |
✘ | 6o9K | 0662 | 2023-08-29 | 2019-03-14 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.96 | — | — | — | 4.0 | 0.004 | 0.74 | 0.0 | 0.04 | 16.90 | 0.01 | 2.050 | 28.53 | 1.02 | 10.2 | 89.2 | 0.6 | -2.50 | — | 0.92 | 0.85 | — | 146597 | 6162 | 55 | 4594 | 0 | 0 | 0 | logfile |
✔ | 6ENU | 3903 | 2023-08-29 | 2017-10-06 | 3.1 | 3.15 | — | 3.1 | 0.008 | 1.01 | 1.0 | 0.05 | 15.28 | 0.01 | 1.009 | 4.96 | 1.19 | 10.8 | 88.5 | 0.7 | -4.85 | 0.82 | 0.84 | 2.83 | 3.1 | 0.004 | 0.66 | 0.0 | 0.04 | 15.77 | 0.00 | 2.067 | 11.42 | 0.71 | 9.9 | 89.9 | 0.2 | -2.16 | 0.58 | 0.83 | 0.87 | 2.27 | 146475 | 6094 | 58 | 4613 | 0 | 0 | 0 | logfile |
✔ | 7YEZ | 33779 | 2023-08-29 | 2022-07-06 | 3.4 | 4.04 | 3.50 | 3.9 | 0.008 | 1.09 | 6.0 | 0.07 | 10.70 | 0.01 | 1.398 | 7.56 | 0.30 | 8.8 | 91.1 | 0.1 | -3.92 | 0.45 | 0.78 | 1.22 | 3.9 | 0.003 | 0.78 | 0.0 | 0.04 | 15.40 | 0.00 | 2.041 | 13.18 | 0.39 | 6.2 | 93.8 | 0.0 | -0.87 | 2.15 | 0.49 | 0.86 | 1.48 | 146052 | 18531 | 28 | 0 | 6 | 0 | 0 | logfile |
✔ | 6HTQ | 0270 | 2023-08-29 | 2018-10-04 | 4.5 | 4.18 | — | 4.1 | 0.008 | 0.89 | 0.0 | 0.04 | 17.41 | 0.01 | 2.213 | 8.09 | 0.32 | 10.3 | 89.4 | 0.3 | -4.50 | 0.83 | 0.79 | — | 4.1 | 0.004 | 0.70 | 0.0 | 0.04 | 17.81 | 0.01 | 1.973 | 21.56 | 0.06 | 11.1 | 88.8 | 0.1 | -2.67 | 0.75 | 0.83 | 0.79 | — | 146680 | 5640 | 53 | 4770 | 0 | 0 | 0 | logfile |
✔ | 8AKN | 15488 | 2023-08-29 | 2022-07-30 | 2.3 | 1.94 | 2.20 | 2.2 | 0.013 | 1.78 | 0.0 | 0.17 | 14.48 | 0.02 | 1.528 | 3.25 | 2.19 | 5.9 | 93.2 | 0.9 | -3.31 | 0.61 | 0.80 | 5.18 | 2.1 | 0.005 | 0.79 | 0.0 | 0.04 | 15.02 | 0.01 | 1.767 | 7.21 | 2.33 | 2.6 | 97.3 | 0.1 | -0.01 | 1.22 | 0.72 | 0.85 | 4.95 | 146513 | 5960 | 103 | 4552 | 309 | 1754 | 0 | logfile |
✔ | 5JTE | 8175 | 2023-08-29 | 2016-05-09 | 3.6 | 3.13 | — | 3.2 | 0.015 | 1.75 | 0.0 | 0.07 | 12.22 | 0.01 | 1.432 | 6.25 | 0.00 | 7.4 | 90.0 | 2.7 | -1.94 | 0.53 | 0.56 | 0.78 | 3.1 | 0.006 | 0.90 | 0.0 | 0.05 | 16.17 | 0.01 | 2.025 | 16.45 | 1.18 | 10.2 | 89.1 | 0.8 | -2.75 | 1.48 | 0.58 | 0.68 | 1.21 | 146760 | 5625 | 59 | 4786 | 1 | 0 | 0 | logfile |