Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7WLD	32582	2023-02-23	2022-01-13	2.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19732	2393	11	0	29	0	0	logfile
✔	5oYG	3861	2023-02-20	2017-09-08	4.06	4.29	4.02	4.1	0.007	1.27	10.0	0.10	12.53	0.01	2.282	5.95	1.98	6.9	93.1	0.0	-3.35	0.68	0.83	—	4.1	0.004	0.73	0.0	0.04	12.60	0.00	2.130	11.47	0.00	6.0	94.0	0.0	0.56	0.84	0.68	0.82	—	11596	1418	2	0	0	0	0	logfile
✔	5V8M	8644	2023-02-23	2017-03-22	4.4	4.52	—	4.3	0.015	1.82	0.0	0.11	9.94	0.01	2.124	5.99	0.14	2.4	97.6	0.0	2.25	0.75	0.75	—	4.3	0.005	0.71	0.0	0.04	11.84	0.00	2.078	12.41	0.05	5.3	94.7	0.0	0.60	0.81	0.78	0.81	—	20835	2376	57	0	153	0	0	logfile
✔	7S9B	24931	2023-02-19	2021-09-20	4.2	4.16	—	4.0	0.006	0.82	0.0	0.05	11.72	0.00	2.213	19.98	0.78	9.9	89.8	0.3	-0.99	0.61	0.81	—	4.0	0.003	0.67	0.0	0.04	11.95	0.00	2.218	12.11	0.00	8.0	92.0	0.0	0.41	0.42	0.60	0.80	—	10458	1356	2	0	0	0	0	logfile
✔	7AJQ	11806	2023-02-19	2020-09-29	4.0	3.67	4.30	4.2	0.002	0.55	0.0	0.03	13.10	0.00	2.208	12.84	0.00	3.5	96.5	0.0	-0.98	0.76	0.76	—	4.2	0.003	0.92	0.0	0.05	15.83	0.00	2.139	20.36	0.21	3.6	96.4	0.0	0.85	0.86	0.77	0.77	—	9210	1222	7	0	0	0	0	logfile
✔	6Vo3	21258	2023-02-23	2020-01-29	4.25	4.75	—	4.5	0.019	1.81	0.0	0.10	10.96	0.01	2.385	1.91	0.44	3.8	95.7	0.5	0.21	0.75	0.75	—	4.5	0.004	0.82	0.0	0.05	13.04	0.00	2.136	21.29	0.05	7.6	92.0	0.4	-0.32	1.14	0.76	0.78	—	19554	2334	39	0	78	0	0	logfile
✔	7KTT	23029	2023-02-18	2020-11-24	4.17	4.46	—	4.2	0.007	1.04	0.0	0.06	13.23	0.01	2.239	12.66	0.25	5.7	94.3	0.0	-5.41	0.81	0.78	—	4.2	0.003	0.73	0.0	0.04	13.82	0.00	2.116	20.56	0.00	3.3	96.7	0.0	0.00	0.67	0.81	0.76	—	7568	994	1	0	0	0	0	logfile
✔	8DW2	27749	2023-02-19	2022-07-30	4.11	4.56	4.33	4.3	0.003	0.80	0.0	0.05	16.97	0.01	2.127	18.20	0.48	6.2	93.7	0.1	-0.94	0.76	0.78	—	4.3	0.003	0.69	0.0	0.05	14.00	0.00	2.128	16.79	0.00	7.3	92.6	0.1	-0.80	1.06	0.77	0.80	—	9364	1223	7	0	3	0	0	logfile
✘	7F3T	31440	2023-02-17	2021-06-17	3.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5632	660	4	0	2	0	0	logfile
✔	7T3i	25659	2023-02-25	2021-12-08	4.3	4.36	—	4.3	0.003	0.59	0.0	0.04	12.51	0.00	2.101	11.21	0.07	5.7	94.1	0.2	0.58	0.80	0.82	—	4.3	0.004	0.61	0.0	0.04	13.00	0.00	2.106	12.83	0.00	7.0	92.8	0.2	0.67	1.13	0.80	0.83	—	26799	3437	12	0	36	0	0	logfile
✔	6SoF	10273	2023-02-27	2019-08-29	4.3	4.23	4.20	4.1	0.006	0.93	0.0	0.05	14.59	0.01	2.017	10.51	0.62	17.7	82.3	0.0	-5.47	0.82	0.72	—	4.1	0.003	0.67	0.0	0.04	13.36	0.00	1.934	15.84	0.00	15.3	84.7	0.0	-3.90	1.45	0.82	0.72	—	30333	1966	12	0	0	0	14564	logfile
✘	7BLZ	12228	2023-02-27	2021-01-19	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	55800	2817	41	0	206	249	21916	logfile
✘	7N0L	24108	2023-02-17	2021-05-25	2.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5270	626	4	0	2	0	0	logfile
✔	7UVT	26816	2023-02-20	2022-05-02	3.9	4.17	4.00	4.1	0.001	0.41	0.0	0.02	16.13	0.00	1.897	6.61	0.00	0.0	0.0	0.0	—	0.76	0.74	—	4.1	0.006	0.70	0.0	0.04	17.94	0.01	1.892	21.35	0.00	0.0	0.0	0.0	—	0.48	0.77	0.76	—	12409	0	1	386	0	0	4149	logfile
✘	7oY2	13108	2023-02-18	2021-06-23	2.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7166	858	7	0	7	24	0	logfile
✔	6Q0X	20555	2023-02-20	2019-08-02	4.2	4.30	—	4.2	0.007	0.88	0.0	0.05	17.07	0.00	2.139	24.04	1.21	8.1	91.9	0.0	-3.83	0.68	0.72	—	4.2	0.004	0.74	0.0	0.04	15.81	0.00	2.207	18.64	0.00	6.5	93.5	0.0	0.26	1.41	0.67	0.73	—	12468	1492	4	0	0	0	0	logfile
✔	7BTR	30183	2023-02-22	2020-04-02	4.54	4.80	—	4.5	0.007	1.22	0.0	0.06	12.09	0.01	2.037	10.84	0.99	14.4	85.6	0.0	-4.59	0.88	0.78	—	4.5	0.003	0.82	0.0	0.05	12.53	0.00	2.112	18.84	0.00	11.6	88.4	0.0	-2.20	1.69	0.89	0.80	—	16737	2087	6	0	0	0	0	logfile
✘	6WHG	21672	2023-02-22	2020-04-08	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17116	2092	8	0	12	0	0	logfile
✘	8DKU	27491	2023-02-20	2022-07-06	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10644	1300	5	0	3	0	0	logfile
✔	6oRP	20177	2023-02-23	2019-04-30	4.4	4.68	4.45	4.7	0.009	1.57	7.0	0.10	13.19	0.02	1.539	13.65	1.05	15.8	83.7	0.4	-4.88	0.46	0.61	—	4.7	0.004	0.85	0.0	0.05	13.72	0.00	2.113	14.08	0.00	12.5	87.4	0.1	-3.36	0.92	0.60	0.80	—	19972	2397	47	0	98	0	0	logfile

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