Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6K99	9947	2022-12-13	2019-06-14	4.1	6.62	4.25	6.7	0.003	0.72	0.0	0.04	12.51	0.00	2.388	7.15	1.46	7.6	92.4	0.0	-2.97	0.73	0.83	—	6.9	0.003	0.92	0.0	0.05	13.51	0.00	2.101	18.95	0.00	6.1	93.9	0.0	-1.71	1.83	0.74	0.88	—	8244	996	12	0	0	0	0	logfile
✔	6K7Y	9945	2022-12-18	2019-06-10	3.6	3.57	—	3.5	0.006	0.71	0.0	0.04	15.91	0.00	2.190	7.05	0.06	4.7	95.2	0.1	-1.75	0.81	0.85	2.48	3.5	0.003	0.55	0.0	0.04	16.00	0.00	2.201	7.65	0.21	4.6	95.4	0.0	1.16	0.47	0.81	0.85	2.23	32956	3872	29	0	26	0	0	logfile
✔	6K7X	9944	2022-12-14	2019-06-10	3.27	3.51	—	3.4	0.008	1.07	0.0	0.06	17.46	0.01	2.270	3.56	0.21	4.2	95.8	0.0	-4.41	0.80	0.85	3.00	3.4	0.004	0.61	0.0	0.04	16.65	0.00	2.208	6.24	0.17	3.8	96.2	0.0	0.61	0.43	0.81	0.88	2.39	22944	2622	24	0	30	0	0	logfile
✔	6K7N	9942	2022-12-12	2019-06-07	2.84	2.94	2.68	2.9	0.013	1.53	0.0	0.07	15.45	0.01	2.046	6.89	0.44	8.0	91.9	0.1	-3.74	0.61	0.85	3.92	2.9	0.003	0.63	0.0	0.04	16.63	0.00	1.975	10.33	1.92	5.7	94.3	0.0	-0.74	0.48	0.65	0.87	3.46	10544	1308	5	0	8	0	0	logfile
✔	6K7M	9941	2022-12-12	2019-06-07	2.95	3.08	2.77	3.0	0.012	1.43	0.0	0.07	15.23	0.01	2.002	5.49	0.61	6.8	93.1	0.1	-3.41	0.65	0.85	3.61	3.0	0.003	0.61	0.0	0.04	16.21	0.00	1.986	9.24	2.09	5.1	94.9	0.0	0.08	0.51	0.68	0.87	3.01	10591	1307	5	0	9	0	0	logfile
✔	6K7L	9939	2022-12-12	2019-06-07	2.83	2.93	2.65	2.9	0.012	1.15	0.0	0.07	15.48	0.01	1.976	4.83	0.17	7.5	92.3	0.2	-3.27	0.58	0.83	3.57	2.9	0.004	0.62	0.0	0.04	16.98	0.00	1.922	8.03	0.87	5.8	94.2	0.0	-0.29	0.46	0.69	0.89	3.12	10615	1317	5	0	8	0	0	logfile
✔	6K7K	9937	2022-12-12	2019-06-07	3.04	3.15	2.84	3.1	0.011	1.45	0.0	0.07	15.16	0.01	2.000	5.55	0.35	7.1	92.9	0.0	-3.51	0.63	0.85	3.58	3.1	0.003	0.62	0.0	0.04	16.51	0.00	1.896	8.23	0.26	4.8	95.2	0.0	-0.20	0.99	0.69	0.87	3.11	10586	1309	5	0	10	0	0	logfile
✔	6K7J	9935	2022-12-12	2019-06-07	3.08	3.21	2.88	3.2	0.013	1.23	0.0	0.07	15.26	0.01	2.159	5.73	0.17	8.6	91.2	0.2	-3.98	0.57	0.82	3.51	3.2	0.005	0.68	0.0	0.05	16.15	0.00	2.149	9.63	0.17	6.3	93.6	0.1	-1.10	0.94	0.68	0.83	3.10	10602	1311	5	0	8	0	0	logfile
✔	6K7i	9934	2022-12-12	2019-06-07	3.22	3.34	3.11	3.3	0.015	1.31	0.0	0.08	15.12	0.01	2.253	6.02	0.78	8.9	90.7	0.4	-4.41	0.60	0.84	3.87	3.3	0.003	0.64	0.0	0.04	16.26	0.00	2.157	8.98	0.35	5.5	94.5	0.0	-0.87	0.45	0.68	0.81	3.25	10590	1310	5	0	7	0	0	logfile
✔	6K7H	9932	2022-12-12	2019-06-07	3.22	3.37	3.03	3.3	0.011	1.11	0.0	0.06	15.62	0.01	2.274	5.69	1.13	6.5	93.5	0.0	-3.82	0.65	0.85	3.45	3.3	0.003	0.61	0.0	0.04	16.35	0.00	2.130	8.37	0.26	5.4	94.6	0.0	-0.42	0.95	0.66	0.87	2.76	10577	1312	4	0	6	0	0	logfile
✔	6K7G	9931	2022-12-12	2019-06-07	3.3	3.42	3.12	3.4	0.012	1.18	0.0	0.07	15.55	0.01	2.262	5.65	0.43	9.1	90.7	0.2	-4.12	0.61	0.85	3.53	3.4	0.004	0.64	0.0	0.04	16.56	0.00	2.185	9.38	0.26	7.3	92.7	0.0	-1.02	0.95	0.69	0.88	3.23	10569	1313	4	0	6	0	0	logfile
✘	6K61	9918	2022-12-22	2019-05-31	2.37	2.37	—	2.4	0.012	1.43	0.0	0.08	18.22	0.02	1.219	8.00	0.96	3.1	96.7	0.1	-2.65	0.60	0.88	5.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	49283	4542	44	0	259	0	0	logfile
✔	6K4Y	9916	2022-12-18	2019-05-27	3.79	3.88	—	3.9	0.008	0.98	0.0	0.06	14.87	0.01	2.242	8.97	0.68	7.6	92.3	0.1	-4.54	0.61	0.69	1.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	33247	3950	11	105	3	0	0	logfile
✔	6K4M	9915	2022-12-16	2019-05-24	4.5	7.82	—	7.8	0.006	1.01	0.0	0.05	17.74	0.00	2.258	13.35	0.54	1.8	98.2	0.0	-4.61	0.68	0.84	—	7.8	0.005	0.94	0.0	0.04	15.43	0.01	2.093	29.79	0.30	3.2	96.8	0.0	-0.76	1.59	0.71	0.87	—	31508	3790	48	0	36	0	0	logfile
✔	6K43	9913	2022-12-16	2019-05-23	3.7	4.12	—	4.0	0.007	0.72	0.0	0.04	15.85	0.00	1.266	17.54	0.12	6.9	93.1	0.0	-2.02	0.75	0.82	1.49	4.1	0.004	0.70	0.0	0.03	18.39	0.00	2.138	6.60	0.54	3.9	96.1	0.0	3.92	0.81	0.77	0.82	1.49	31808	3840	48	0	36	0	0	logfile
✔	6K42	9912	2022-12-12	2019-05-23	4.1	4.04	—	4.1	0.005	0.82	0.0	0.05	9.20	0.01	2.288	4.73	0.31	5.4	94.6	0.0	-4.37	0.60	0.63	—	4.0	0.003	0.74	0.0	0.04	13.47	0.00	2.074	12.72	0.21	4.5	95.5	0.0	-1.62	2.24	0.66	0.73	—	8816	1116	6	0	1	0	0	logfile
✔	6K41	9911	2022-12-12	2019-05-23	2.9	2.88	—	2.9	0.009	1.06	0.0	0.06	10.20	0.01	2.166	4.41	0.44	5.1	94.9	0.0	-2.62	0.73	0.85	4.09	2.9	0.003	0.60	0.0	0.04	15.29	0.00	2.061	6.92	2.74	3.5	96.5	0.0	0.64	0.67	0.75	0.83	3.24	8430	1077	6	0	1	0	0	logfile
✔	6K3o	9910	2022-12-16	2019-05-21	3.4	3.86	—	3.8	0.003	0.56	0.0	0.03	14.46	0.00	1.077	16.09	0.00	3.8	96.2	0.0	-1.52	0.79	0.82	3.15	3.8	0.004	0.73	0.0	0.03	17.05	0.00	1.627	5.96	0.75	2.1	97.9	0.0	3.83	0.50	0.76	0.81	2.46	31508	3790	48	0	36	0	0	logfile
✔	6K32	9907	2022-12-12	2019-05-16	3.2	3.73	—	3.8	0.009	1.20	1.0	0.08	11.34	0.01	1.345	10.28	1.25	6.3	93.3	0.3	-4.88	0.28	0.72	1.49	3.7	0.005	0.77	0.0	0.05	16.36	0.00	1.183	13.29	0.74	6.1	93.9	0.1	-1.29	1.62	0.31	0.83	2.35	61364	7723	10	8	6	0	0	logfile
✔	6K1H	9906	2022-12-12	2019-05-10	3.52	3.52	—	3.5	0.007	0.96	0.0	0.05	13.76	0.01	1.774	20.31	0.90	13.3	86.5	0.2	-4.44	0.64	0.82	1.93	3.5	0.004	0.79	0.0	0.04	15.84	0.00	2.104	13.08	0.65	9.6	90.4	0.0	-1.89	2.01	0.64	0.82	1.83	11769	1560	9	0	3	0	0	logfile

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