Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6K32	9907	2023-04-22	2019-05-16	3.2	3.73	—	3.8	0.009	1.22	1.0	0.07	11.49	0.01	1.345	10.22	1.25	6.3	93.3	0.3	-4.88	0.28	0.72	1.49	3.7	0.004	0.78	0.0	0.05	16.38	0.00	1.254	13.10	0.77	5.7	94.2	0.0	-1.38	1.36	0.31	0.82	2.33	61364	7723	10	8	6	0	0	logfile
✔	6K1H	9906	2023-04-22	2019-05-10	3.52	3.52	—	3.5	0.007	0.98	0.0	0.05	13.18	0.01	1.774	20.26	0.90	13.3	86.5	0.2	-4.44	0.64	0.82	1.93	3.5	0.003	0.76	0.0	0.04	15.34	0.01	2.115	14.29	0.41	8.5	91.5	0.0	-1.75	1.51	0.64	0.81	1.95	11769	1560	9	0	3	0	0	logfile
✘	6K15	9905	2023-04-25	2019-05-09	3.4	3.68	—	3.6	0.005	0.96	0.0	0.05	10.23	0.01	1.639	5.00	0.33	8.6	91.3	0.1	-4.21	0.74	0.78	2.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21486	2655	14	0	1	0	0	logfile
✔	6K0B	9900	2023-04-27	2019-05-05	4.3	4.49	—	4.2	0.003	0.78	0.0	0.04	14.21	0.01	2.011	5.73	0.66	6.1	93.9	0.0	-3.67	0.84	0.69	—	4.2	0.003	0.67	0.0	0.04	15.27	0.01	2.109	20.51	0.00	6.6	93.4	0.0	-0.69	1.79	0.88	0.79	—	25908	1376	16	682	2	0	0	logfile
✘	6JZo	9898	2023-04-25	2019-05-03	3.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21405	2657	8	0	12	0	0	logfile
✔	6JXR	9895	2023-04-20	2019-04-24	3.7	3.95	—	3.9	0.008	1.01	0.0	0.06	10.83	0.01	2.273	5.82	0.74	7.2	92.6	0.2	-3.45	0.69	0.78	2.74	3.9	0.004	0.72	0.0	0.04	15.74	0.00	2.115	12.41	0.96	6.5	93.3	0.2	-0.19	1.71	0.66	0.79	2.08	8437	1073	8	0	0	0	0	logfile
✔	6JXC	9893	2023-04-23	2019-04-23	4.1	4.20	—	4.1	0.018	1.71	0.0	0.09	8.99	0.01	2.221	4.77	0.38	9.3	87.7	3.0	-1.28	0.50	0.61	—	4.1	0.003	0.78	0.0	0.04	12.25	0.00	2.095	10.74	0.00	11.5	86.8	1.7	0.44	0.96	0.55	0.69	—	15270	2345	1	0	0	0	0	logfile
✔	6JXA	9892	2023-04-23	2019-04-23	4.3	4.65	—	4.2	0.017	1.81	3.0	0.10	9.08	0.01	1.926	29.72	2.04	12.2	79.3	8.5	-2.72	0.49	0.42	—	4.2	0.005	1.04	0.0	0.05	11.62	0.01	2.085	25.04	0.00	17.4	79.8	2.8	-2.41	0.95	0.65	0.59	—	14100	2244	1	0	0	0	0	logfile
✘	6JV2	9889	2023-04-21	2019-04-15	4.4	5.59	—	4.4	0.011	1.30	1.0	0.06	16.74	0.01	2.116	19.38	1.92	13.3	86.5	0.3	-4.61	0.83	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	111080	14564	16	0	24	0	0	logfile
✔	6KUV	9888	2023-04-22	2019-09-02	4.1	4.13	—	4.1	0.003	0.79	0.0	0.05	10.91	0.01	2.206	6.18	0.28	7.4	92.5	0.2	-4.84	0.69	0.72	—	4.1	0.003	0.74	0.0	0.04	14.40	0.00	2.132	10.92	0.14	7.2	92.8	0.1	-1.10	2.92	0.73	0.76	—	13720	1640	5	23	0	0	0	logfile
✔	6JT2	9885	2023-04-20	2019-04-08	3.8	3.88	—	3.8	0.004	0.74	0.0	0.04	11.14	0.01	1.980	10.08	3.54	4.0	95.7	0.3	-2.54	0.80	0.80	2.23	3.8	0.003	0.69	0.0	0.04	13.57	0.00	1.319	10.96	0.12	3.7	96.3	0.0	-0.17	1.66	0.82	0.81	1.64	8191	1075	4	0	4	0	0	logfile
✔	6JT1	9884	2023-04-20	2019-04-08	3.9	4.00	—	3.9	0.004	0.77	0.0	0.04	12.20	0.00	2.212	10.33	4.62	5.8	93.8	0.4	-2.92	0.77	0.81	2.21	3.9	0.003	0.76	0.0	0.04	14.37	0.00	2.123	11.28	0.33	4.3	95.6	0.1	0.34	1.25	0.81	0.82	2.01	8602	1118	2	0	1	0	0	logfile
✔	6JT0	9883	2023-04-20	2019-04-08	4.0	4.28	—	4.0	0.004	0.71	0.0	0.04	12.21	0.00	2.212	11.03	4.73	5.7	93.9	0.4	-2.84	0.85	0.82	—	4.0	0.003	0.86	0.0	0.05	13.73	0.00	2.209	12.74	0.22	5.1	94.9	0.0	0.23	1.67	0.86	0.82	—	8602	1118	2	0	1	0	0	logfile
✘	6JSi	9882	2023-04-22	2019-04-08	4.7	4.70	—	4.6	0.007	1.48	0.0	0.06	15.33	0.01	2.231	10.68	2.42	23.2	72.3	4.5	-6.05	0.64	0.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62820	5844	9	0	4044	0	0	logfile
✘	6JRS	9880	2023-04-21	2019-04-05	3.7	3.86	—	3.7	0.010	1.08	0.0	0.06	16.39	0.01	2.225	8.77	0.90	12.4	87.2	0.3	-5.87	0.74	0.80	1.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	112168	14652	20	0	24	0	0	logfile
✘	6JRR	9879	2023-04-20	2019-04-05	3.9	4.09	—	3.9	0.010	1.14	4.0	0.06	15.90	0.01	1.827	8.44	0.80	10.2	89.5	0.2	-5.20	0.76	0.81	1.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	109132	14268	12	0	16	0	0	logfile
✔	6JQM	9874	2023-04-29	2019-03-31	3.3	3.54	—	3.5	0.005	0.83	0.0	0.05	10.76	0.01	2.304	5.76	0.06	5.8	94.2	0.0	-4.47	0.76	0.84	3.78	3.5	0.003	0.61	0.0	0.04	14.51	0.00	2.188	10.16	0.09	4.7	95.3	0.0	-1.23	2.69	0.78	0.87	2.95	30936	4068	12	0	6	0	0	logfile
✔	6JQ0	9872	2023-04-28	2019-03-28	3.54	4.12	—	4.0	0.007	1.21	0.0	0.06	16.27	0.01	2.235	4.90	0.63	13.0	86.5	0.5	-5.59	0.69	0.85	1.20	4.0	0.004	0.84	0.0	0.05	17.30	0.01	2.062	9.76	0.43	13.0	86.7	0.3	-2.20	0.54	0.66	0.83	0.99	26917	3323	13	0	20	0	0	logfile
✔	6JPU	9871	2023-04-29	2019-03-28	4.27	5.69	—	6.0	0.007	1.03	0.0	0.06	17.27	0.01	1.984	70.08	9.58	9.8	90.1	0.2	-3.97	0.80	0.76	—	5.2	0.003	0.67	0.0	0.04	13.41	0.00	1.861	100.50	0.00	10.5	89.5	0.0	-1.47	1.12	0.80	0.78	—	30378	3462	6	0	0	0	2610	logfile
✔	6JPQ	9870	2023-04-28	2019-03-27	4.44	5.93	—	7.2	0.006	1.13	0.0	0.06	12.18	0.01	2.195	10.45	0.57	9.1	90.9	0.0	-5.01	0.81	0.77	—	6.0	0.004	0.82	0.0	0.05	12.94	0.01	2.056	29.36	0.00	9.2	90.8	0.0	-2.14	1.80	0.83	0.81	—	27768	3462	6	0	0	0	0	logfile

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