Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3JAU	6366	2023-04-22	2015-06-24	4.8	4.76	—	6.0	0.027	2.66	660.0	0.16	14.74	0.02	1.686	10.72	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	5.4	0.003	0.70	0.0	0.04	13.62	0.00	2.034	12.63	0.00	4.6	95.0	0.4	-1.07	1.45	0.24	0.57	—	114900	14700	180	0	0	0	0	logfile
✔	7VEA	31944	2023-04-21	2021-09-08	3.7	3.55	—	3.5	0.009	1.13	0.0	0.04	13.48	0.00	2.098	6.48	0.58	1.5	98.4	0.0	2.51	0.65	0.78	1.44	3.5	0.004	0.77	0.0	0.04	16.55	0.00	2.063	15.67	0.57	2.2	97.7	0.0	2.25	1.43	0.69	0.77	1.04	111542	15594	165	0	84	0	0	logfile
✔	7SC9	25030	2023-04-23	2021-09-27	2.6	3.71	2.70	3.0	0.005	0.63	0.0	0.04	13.52	0.01	2.039	38.58	0.01	2.7	97.2	0.0	2.39	0.80	0.82	1.56	3.0	0.004	0.81	0.0	0.04	16.15	0.00	2.009	19.29	1.89	2.8	97.1	0.1	1.36	0.60	0.80	0.84	1.23	117262	14948	164	0	76	0	0	logfile
✔	7SC7	25028	2023-04-20	2021-09-27	2.8	3.66	—	3.3	0.007	1.08	1.0	0.06	14.67	0.01	2.240	6.50	1.49	2.4	97.6	0.0	-1.25	0.73	0.87	1.85	3.2	0.005	0.99	1.0	0.05	16.95	0.01	1.998	23.67	2.66	3.2	96.8	0.0	0.75	0.70	0.72	0.88	1.52	107930	13756	156	0	72	0	0	logfile
✘	7Pi0	13429	2023-04-28	2021-08-19	2.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	77465	7442	133	0	354	1724	0	logfile
✘	6KAC	9955	2023-04-28	2019-06-21	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	77947	7858	126	0	318	595	0	logfile
✘	7Pi5	13430	2023-04-28	2021-08-19	2.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	76287	7455	123	0	343	718	0	logfile
✔	7XXF	33501	2023-04-29	2022-05-30	2.24	2.16	2.23	2.2	0.023	2.96	0.0	0.05	21.41	0.02	2.014	7.34	1.31	2.8	97.2	0.0	1.59	0.77	0.88	5.31	2.2	0.003	1.46	0.0	0.04	18.67	0.00	1.986	7.47	1.02	2.8	97.2	0.0	2.26	0.89	0.77	0.90	4.60	29826	3004	120	0	98	538	0	logfile
✔	7QSM	14134	2023-04-26	2022-01-13	2.3	2.31	—	2.3	0.007	0.92	0.0	0.85	15.81	0.00	1.463	2.79	0.58	2.3	97.6	0.0	0.75	0.76	0.90	6.42	2.3	0.007	1.29	0.0	0.25	16.21	0.00	1.942	4.43	0.72	1.6	98.3	0.0	1.81	0.81	0.77	0.91	5.60	71640	8262	118	0	62	2774	0	logfile
✔	6X62	22068	2023-04-21	2020-05-27	3.5	3.69	—	3.7	0.014	1.87	45.0	0.09	15.63	0.01	2.185	6.98	4.90	8.5	91.5	0.0	-3.87	0.65	0.64	0.52	3.6	0.004	0.87	0.0	0.05	16.24	0.00	1.996	20.45	0.90	6.4	93.6	0.0	-1.71	1.27	0.74	0.82	1.24	109070	15548	117	0	0	0	0	logfile
✔	6X66	22071	2023-04-20	2020-05-27	4.2	6.75	—	8.4	0.016	1.73	27.0	0.08	14.04	0.01	2.162	21.79	0.38	12.3	87.7	0.0	-3.77	0.72	0.45	—	4.2	0.004	0.84	0.0	0.05	12.78	0.00	1.926	28.73	0.02	8.6	91.3	0.1	-2.41	2.90	0.78	0.63	—	109070	15548	117	0	0	0	0	logfile
✔	7SCA	25031	2023-04-20	2021-09-27	2.1	2.23	2.15	2.2	0.011	1.14	7.0	0.07	15.33	0.01	2.057	5.44	0.78	1.0	99.0	0.0	2.17	0.79	0.85	5.74	2.2	0.002	0.55	0.0	0.04	16.60	0.00	2.121	8.28	0.87	0.9	99.1	0.0	2.87	1.09	0.79	0.85	5.28	55437	6836	116	0	54	1325	0	logfile
✔	7SC8	25029	2023-04-20	2021-09-27	2.1	2.19	2.13	1.9	0.008	1.12	10.0	0.07	15.00	0.01	2.102	5.20	0.38	1.0	99.0	0.0	2.13	0.82	0.79	4.35	1.9	0.004	0.57	0.0	0.04	16.48	0.00	2.130	8.45	0.93	1.1	98.9	0.0	2.82	0.36	0.86	0.87	4.19	56784	6836	116	0	54	2672	0	logfile
✔	7R47	14282	2023-04-25	2022-02-08	2.3	2.29	—	2.3	0.008	0.81	0.0	0.85	17.14	0.01	1.921	2.60	1.15	2.1	97.9	0.0	0.85	0.73	0.90	6.13	2.3	0.007	1.32	0.0	0.26	16.92	0.00	1.867	4.03	1.22	1.6	98.4	0.0	1.61	1.49	0.74	0.92	5.86	68578	8089	116	0	51	1836	0	logfile
✔	7QSN	14139	2023-04-26	2022-01-13	2.81	2.74	2.82	2.7	0.008	0.92	0.0	0.85	15.28	0.00	1.443	3.83	0.01	3.3	96.7	0.0	-0.45	0.77	0.87	4.68	2.7	0.007	1.31	0.0	0.25	16.35	0.00	1.942	6.18	1.15	2.1	97.8	0.0	1.49	1.18	0.77	0.88	3.94	69320	8201	116	0	59	1096	0	logfile
✔	7QSK	14132	2023-04-26	2022-01-13	2.84	2.93	2.90	2.8	0.008	0.91	0.0	0.84	15.15	0.00	1.435	3.34	0.15	3.1	96.9	0.1	0.26	0.77	0.87	4.81	2.9	0.007	1.30	0.0	0.25	16.30	0.00	1.969	5.83	0.87	2.1	97.8	0.0	1.67	0.50	0.78	0.90	3.97	69987	8291	116	0	59	1060	0	logfile
✔	7R45	14272	2023-04-25	2022-02-08	2.4	2.37	—	2.3	0.008	0.84	0.0	0.85	17.26	0.01	1.801	2.78	1.20	2.3	97.7	0.0	0.76	0.72	0.90	5.82	2.3	0.010	1.37	0.0	0.26	17.31	0.01	1.962	4.47	1.50	1.8	98.1	0.0	1.38	1.06	0.73	0.92	5.49	68195	8098	115	0	52	1334	0	logfile
✔	7R4F	14302	2023-04-23	2022-02-08	2.4	2.39	—	2.3	0.007	0.79	0.0	0.87	17.28	0.01	1.904	2.94	1.29	2.5	97.5	0.0	0.66	0.73	0.90	5.70	2.4	0.007	1.33	0.0	0.26	17.05	0.00	2.078	4.33	1.41	1.8	98.2	0.0	1.64	0.26	0.74	0.91	5.08	65494	7788	114	0	44	1415	0	logfile
✔	7R42	14256	2023-04-26	2022-02-08	2.3	2.33	—	2.3	0.008	0.85	0.0	0.84	17.07	0.00	1.921	3.20	1.23	2.6	97.4	0.0	0.55	0.71	0.90	5.95	2.3	0.007	1.30	0.0	0.25	16.95	0.00	1.973	4.32	1.33	1.7	98.3	0.0	1.64	0.25	0.71	0.91	5.36	69480	8204	114	0	58	1545	0	logfile
✔	7RCV	24407	2023-04-20	2021-07-08	2.01	1.78	—	1.9	0.024	2.38	0.0	0.11	20.31	0.01	1.915	13.94	1.99	2.6	97.4	0.0	0.92	0.78	0.79	5.10	1.9	0.007	0.98	0.0	0.06	19.24	0.01	1.984	13.17	1.79	3.0	97.0	0.0	0.41	0.91	0.81	0.84	5.30	54656	5544	114	0	228	1236	0	logfile

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