Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6SAG	10130	2021-08-08	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.005	0.69	0.0	0.04	15.26	0.01	2.016	3.20	1.24	2.8	97.2	0.0	1.28	0.73	0.59	0.88	6.95	54080	6120	240	120	240	2840	0	logfile
✔	6BVN	7295	2021-08-15	2017-12-13	4.0	3.81	—	3.7	0.046	1.94	0.0	0.04	9.90	0.02	2.143	24.33	0.00	4.4	95.6	0.0	-2.15	0.81	0.84	—	3.7	0.004	1.66	0.0	0.04	15.68	0.01	2.102	16.75	0.41	2.0	98.0	0.0	1.81	0.93	0.81	0.84	—	210000	25920	240	0	60	0	0	logfile
✔	5A79	3073	2021-08-09	2015-07-03	4.1	3.86	—	3.8	0.008	1.75	0.0	0.09	16.89	0.01	1.146	88.80	1.96	12.1	87.9	0.0	-4.64	0.54	0.76	—	3.8	0.004	0.88	0.0	0.04	15.42	0.01	2.079	16.57	0.07	10.0	89.4	0.6	-1.87	0.98	0.53	0.77	—	168165	19647	222	333	0	0	0	logfile
✔	6F2S	4174	2021-08-12	2017-11-27	3.3	3.35	—	3.3	0.007	1.13	10.0	0.09	16.39	0.00	1.661	2.42	1.03	5.3	94.4	0.4	-3.00	0.59	0.66	0.71	3.3	0.004	0.65	0.0	0.04	18.82	0.00	2.085	10.23	0.79	2.8	97.1	0.0	-1.85	1.16	0.79	0.88	3.31	191700	21760	220	760	0	0	0	logfile
✔	5A7A	3074	2021-08-08	2015-07-03	4.1	3.87	—	3.9	0.008	1.83	0.0	0.09	20.18	0.01	1.270	102.99	3.97	7.0	93.0	0.0	-3.08	0.56	0.76	—	3.9	0.006	1.01	2.0	0.05	17.13	0.01	2.106	20.82	0.08	9.2	90.8	0.0	-1.96	1.43	0.55	0.76	—	158894	18550	212	318	0	0	0	logfile
✔	7KJP	22897	2021-08-23	2020-10-26	3.86	3.46	3.89	4.1	0.002	0.49	0.0	0.04	12.95	0.00	1.504	4.59	0.00	4.2	95.8	0.0	0.65	0.56	0.76	1.57	4.1	0.004	0.76	0.0	0.05	15.48	0.01	2.125	11.86	0.60	5.2	94.8	0.0	-0.27	0.58	0.57	0.77	1.37	242536	31415	183	0	0	0	0	logfile
✔	7CHK	30375	2021-08-30	2020-07-06	2.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	256017	32208	183	0	0	0	0	logfile
✔	5VLZ	8709	2021-08-12	2017-04-26	4.4	4.55	—	4.4	0.006	0.89	0.0	0.00	5.88	0.00	2.272	2.04	0.00	6.1	93.9	0.0	-1.92	0.80	0.67	—	4.4	0.003	0.85	0.0	0.00	5.98	0.00	2.193	1.98	0.00	8.6	91.4	0.0	-1.66	1.69	0.83	0.79	—	96897	24179	181	0	0	0	0	logfile
✔	6SCL	10142	2021-08-12	2019-07-24	3.0	3.16	—	3.1	0.008	0.96	0.0	0.06	10.90	0.01	1.268	12.69	3.07	5.2	94.8	0.0	-3.29	0.77	0.82	3.82	3.1	0.007	0.68	0.0	0.05	15.76	0.00	2.153	10.31	2.96	4.9	95.1	0.0	-2.15	0.73	0.80	0.87	3.90	195360	25560	180	0	0	0	0	logfile
✔	3J7N	6000	2021-08-17	2014-07-18	3.8	3.16	—	3.9	0.014	1.65	120.0	0.11	11.81	0.01	0.277	35.08	1.88	11.4	85.9	2.8	-1.51	0.73	0.78	2.08	3.3	0.037	0.93	0.0	0.05	17.67	0.01	2.130	17.45	1.01	5.7	93.3	1.0	-1.25	1.85	0.71	0.79	1.71	217080	28680	180	0	0	0	0	logfile
✔	5KiP	8253	2021-08-09	2016-06-16	3.7	3.93	—	4.0	0.008	0.89	0.0	0.05	8.52	0.01	0.949	46.88	0.00	16.3	83.7	0.0	-6.55	0.77	0.84	2.69	4.0	0.005	0.79	0.0	0.05	13.62	0.01	2.033	17.14	0.26	7.6	92.4	0.0	-4.02	0.84	0.72	0.84	1.82	171120	23400	180	0	0	0	0	logfile
✔	6RJ0	4899	2021-08-22	2019-04-25	3.7	3.97	3.80	3.9	0.008	1.12	0.0	0.07	10.33	0.01	2.169	5.52	0.00	13.8	86.2	0.0	-5.36	0.70	0.82	2.82	3.9	0.003	0.69	0.0	0.04	14.97	0.01	1.722	12.40	0.22	7.2	92.8	0.0	-3.49	1.80	0.72	0.84	2.12	232680	30360	180	0	0	0	0	logfile
✔	3J7M	6000	2021-08-17	2014-07-18	3.8	3.16	—	3.9	0.014	1.63	0.0	0.11	11.98	0.01	0.337	30.08	1.61	12.4	85.4	2.2	-1.80	0.73	0.78	2.06	3.3	0.038	1.11	0.0	0.05	17.30	0.01	1.439	20.47	1.69	8.6	90.7	0.6	-2.27	1.60	0.71	0.79	1.64	217080	28680	180	0	0	0	0	logfile
✔	6SCo	10144	2021-08-12	2019-07-25	3.3	3.49	—	3.4	0.006	0.83	0.0	0.06	9.04	0.00	0.412	23.68	0.00	9.1	90.9	0.0	-4.50	0.58	0.58	0.50	3.4	0.009	0.84	0.0	0.05	14.41	0.01	2.007	10.88	0.67	13.1	86.9	0.0	-3.04	1.25	0.75	0.87	3.99	195660	25380	180	0	0	0	0	logfile
✔	7A4H	11633	2021-08-14	2020-08-19	4.5	4.54	4.44	4.5	0.002	0.42	0.0	0.04	10.28	0.00	2.251	6.06	2.76	1.8	98.2	0.0	3.99	0.69	0.73	—	4.5	0.004	0.73	0.0	0.05	13.59	0.00	2.053	14.60	0.04	2.8	97.2	0.0	1.45	1.92	0.73	0.80	—	204396	26904	180	0	0	0	0	logfile
✘	3JB8	6382	2021-08-24	2015-08-04	3.6	3.59	—	96.0	0.011	1.54	0.0	0.07	11.99	0.01	0.235	173.86	4.85	9.9	87.9	2.2	-2.92	0.00	0.00	0.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	245880	33000	180	0	0	0	0	logfile
✔	7A4G	11632	2021-08-14	2020-08-19	4.2	4.25	4.16	4.2	0.002	0.41	0.0	0.04	9.74	0.00	2.229	6.20	1.14	2.3	97.7	0.0	2.89	0.72	0.78	—	4.2	0.003	0.65	0.0	0.05	13.52	0.00	2.110	10.66	0.02	3.3	96.7	0.0	1.39	1.72	0.74	0.80	—	205680	27120	180	0	0	0	0	logfile
✔	6RRS	4989	2021-08-12	2019-05-20	3.9	4.30	4.41	3.8	0.013	2.10	0.0	0.00	2.04	0.01	2.364	0.79	0.00	3.9	95.3	0.8	-0.85	0.56	0.64	—	3.7	0.004	0.79	0.0	0.00	6.65	0.00	2.206	1.98	0.00	12.9	87.1	0.0	-0.96	1.80	0.79	0.69	—	93060	23220	180	0	0	0	0	logfile
✔	6RTK	10001	2021-08-12	2019-05-24	3.47	3.54	3.76	3.5	0.008	0.84	0.0	0.05	14.56	0.00	2.147	23.48	0.00	12.8	87.2	0.0	-5.95	0.63	0.82	2.52	3.5	0.008	0.95	0.0	0.05	17.45	0.01	1.970	22.12	1.41	11.6	88.4	0.0	-4.29	0.65	0.63	0.82	2.11	192480	25140	180	0	0	0	0	logfile
✔	5VLY	8708	2021-08-09	2017-04-26	3.3	3.50	—	3.5	0.008	0.95	0.0	0.06	9.15	0.01	0.762	33.05	0.00	8.0	92.0	0.0	-6.40	0.59	0.75	2.98	3.5	0.007	1.02	0.0	0.05	13.21	0.01	2.046	13.03	0.40	5.5	94.5	0.0	-4.29	0.67	0.67	0.81	2.18	171720	23280	180	0	0	0	0	logfile

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