Table showing results for April 2022

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5W7V	8781	2022-04-06	2017-06-20	3.8	3.42	—	3.5	0.007	0.77	0.0	0.06	12.79	0.00	2.365	17.14	0.00	1.4	98.6	0.0	-2.52	0.47	0.74	3.24	3.4	0.005	0.82	0.0	0.06	15.80	0.00	2.238	9.91	2.42	3.5	96.5	0.0	-0.65	1.28	0.53	0.79	3.88	20430	2640	270	0	0	0	0	logfile
✔	6BVN	7295	2022-04-18	2017-12-13	4.0	3.81	—	3.7	0.045	2.30	0.0	0.04	9.00	0.02	2.143	24.62	0.00	4.4	95.6	0.0	-2.15	0.81	0.84	—	3.7	0.004	1.61	0.0	0.04	15.20	0.01	2.016	15.82	0.64	2.0	98.0	0.0	1.31	0.88	0.82	0.85	—	210000	25920	240	0	60	0	0	logfile
✔	3J0G	5276	2022-04-04	2011-07-21	4.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	108000	14160	240	0	0	0	0	logfile
✔	7CKC	30385	2022-04-14	2020-07-16	2.9	2.95	—	2.9	0.007	0.92	0.0	0.05	16.47	0.01	2.090	5.46	0.00	2.2	97.8	0.0	-0.01	0.81	0.87	3.65	2.9	0.002	0.60	0.0	0.04	17.46	0.00	2.132	5.68	1.24	1.8	98.2	0.0	0.97	1.55	0.81	0.87	3.45	150300	20820	240	0	0	0	0	logfile
✔	6SAG	10130	2022-04-04	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.004	0.63	0.0	0.04	15.40	0.01	2.054	3.11	1.17	3.1	96.9	0.0	1.56	0.73	0.60	0.89	6.90	54080	6120	240	120	240	2840	0	logfile
✔	3J0G	5275	2022-04-04	2011-07-21	4.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	108000	14160	240	0	0	0	0	logfile
✔	6QN1	4595	2022-04-09	2019-02-08	3.28	3.37	3.25	3.3	0.007	0.66	0.0	0.04	14.37	0.00	1.898	4.45	0.41	4.9	95.1	0.0	-2.95	0.81	0.85	2.33	3.3	0.003	0.58	0.0	0.04	17.86	0.00	2.092	5.68	0.52	1.7	98.3	0.0	0.30	0.78	0.82	0.88	1.97	141480	19740	240	0	0	0	0	logfile
✔	7o0V	12680	2022-04-04	2021-03-27	2.5	2.50	—	2.4	0.017	4.36	0.0	0.05	21.56	0.01	2.117	1.77	0.31	1.2	98.8	0.0	1.63	0.82	0.86	5.41	2.4	0.006	1.83	0.0	0.04	21.22	0.01	2.031	7.64	1.31	0.9	99.1	0.0	3.43	0.49	0.83	0.88	4.33	55475	4947	238	0	317	489	0	logfile
✔	7o0X	12682	2022-04-04	2021-03-28	2.44	2.39	—	2.3	0.017	4.32	0.0	0.05	21.28	0.01	2.099	1.63	0.23	1.4	98.6	0.0	1.33	0.82	0.86	5.55	2.3	0.005	1.81	0.0	0.04	20.95	0.00	2.064	6.87	1.05	1.1	98.9	0.0	3.69	0.48	0.82	0.87	4.38	56446	5072	237	0	316	521	0	logfile
✔	7o0W	12681	2022-04-04	2021-03-27	2.47	2.42	—	2.3	0.017	4.33	0.0	0.05	21.50	0.01	2.010	1.97	0.28	1.4	98.6	0.0	1.25	0.82	0.86	5.37	2.3	0.003	1.71	0.0	0.04	20.80	0.00	1.922	7.40	1.28	1.0	99.0	0.0	3.83	1.12	0.82	0.87	4.03	56476	5076	236	0	320	406	0	logfile
✔	7o0U	12679	2022-04-04	2021-03-27	2.35	2.42	—	2.3	0.017	4.34	0.0	0.05	21.53	0.01	2.121	1.71	0.41	1.2	98.8	0.0	1.39	0.83	0.86	5.52	2.2	0.005	1.79	0.0	0.04	20.74	0.00	1.778	7.26	1.43	1.0	99.0	0.0	3.66	1.11	0.84	0.88	4.33	55758	4972	236	0	320	491	0	logfile
✔	5A79	3073	2022-04-11	2015-07-03	4.1	3.86	—	3.8	0.008	1.75	0.0	0.09	16.89	0.01	1.146	91.59	1.96	12.1	87.9	0.0	-4.64	0.54	0.76	—	3.8	0.004	0.91	0.0	0.04	15.40	0.01	2.103	16.81	0.04	9.5	89.9	0.6	-2.39	0.91	0.52	0.75	—	168165	19647	222	333	0	0	0	logfile
✔	6F2S	4174	2022-04-14	2017-11-27	3.3	3.35	—	3.3	0.007	1.13	10.0	0.09	16.39	0.00	1.661	2.42	1.03	5.3	94.4	0.4	-3.00	0.59	0.66	0.71	3.3	0.005	0.71	1.0	0.04	18.98	0.00	2.100	11.20	0.78	3.1	96.9	0.0	-1.99	1.18	0.81	0.89	3.46	191700	21760	220	760	0	0	0	logfile
✔	5A7A	3074	2022-04-10	2015-07-03	4.1	3.87	—	3.9	0.008	1.83	0.0	0.09	20.18	0.01	1.270	105.04	3.97	7.0	93.0	0.0	-3.08	0.56	0.76	—	3.9	0.006	1.02	1.0	0.05	17.29	0.01	2.066	21.41	0.19	9.6	90.4	0.0	-1.68	1.41	0.53	0.76	—	158894	18550	212	318	0	0	0	logfile
✔	7MUV	24023	2022-04-14	2021-05-14	4.6	4.89	—	4.6	0.003	0.56	0.0	0.04	13.22	0.00	2.117	15.78	8.26	5.4	94.6	0.0	-0.13	0.74	0.84	—	4.6	0.004	0.66	0.0	0.04	12.36	0.00	2.012	19.42	0.00	5.9	94.1	0.0	-0.66	0.64	0.74	0.85	—	192370	24140	205	0	981	0	0	logfile
✔	7MUW	24024	2022-04-14	2021-05-14	4.6	5.14	—	4.6	0.004	0.71	0.0	0.05	15.25	0.01	2.214	9.49	12.99	4.9	95.1	0.0	-1.37	0.73	0.81	—	4.6	0.003	0.62	0.0	0.04	12.75	0.00	2.106	17.86	0.01	4.7	95.3	0.0	-0.41	0.69	0.74	0.85	—	192116	24106	205	0	981	0	0	logfile
✔	7MUQ	24018	2022-04-14	2021-05-14	4.6	4.79	—	4.6	0.006	0.81	0.0	0.05	16.18	0.01	2.222	9.56	14.94	6.1	93.9	0.0	-1.46	0.74	0.85	—	4.6	0.005	0.74	0.0	0.05	13.28	0.00	2.031	19.16	0.00	7.0	93.0	0.0	-1.03	0.70	0.74	0.86	—	192370	24140	205	0	981	0	0	logfile
✔	7MUS	24020	2022-04-15	2021-05-14	4.6	4.88	—	4.6	0.005	0.78	0.0	0.05	15.99	0.01	2.234	9.66	14.12	5.8	94.2	0.0	-1.40	0.73	0.82	—	4.6	0.004	0.71	0.0	0.04	13.10	0.00	2.046	20.28	0.02	6.2	93.8	0.0	-0.66	0.70	0.74	0.84	—	192370	24140	205	0	981	0	0	logfile
✔	7MUY	24026	2022-04-14	2021-05-14	4.6	5.12	—	4.6	0.004	0.72	0.0	0.05	15.34	0.01	2.239	9.85	12.99	5.3	94.7	0.0	-1.27	0.72	0.79	—	4.6	0.003	0.65	0.0	0.04	12.85	0.00	2.055	20.25	0.01	5.0	95.0	0.0	-0.59	0.69	0.74	0.84	—	192370	24140	205	0	981	0	0	logfile
✔	7MUC	24004	2022-04-13	2021-05-14	3.8	4.24	—	4.1	0.012	1.82	155.0	0.09	15.73	0.01	1.769	6.24	4.78	5.2	94.8	0.0	-0.65	0.73	0.83	1.53	4.1	0.004	0.72	2.0	0.04	15.88	0.00	1.503	12.28	0.22	4.3	95.7	0.0	0.36	1.68	0.74	0.85	1.69	180380	22474	189	0	981	0	0	logfile

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