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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5W7V | 8781 | 2022-04-06 | 2017-06-20 | 3.8 | 3.42 | — | 3.5 | 0.007 | 0.77 | 0.0 | 0.06 | 12.79 | 0.00 | 2.365 | 17.14 | 0.00 | 1.4 | 98.6 | 0.0 | -2.52 | 0.47 | 0.74 | 3.24 | 3.4 | 0.005 | 0.82 | 0.0 | 0.06 | 15.80 | 0.00 | 2.238 | 9.91 | 2.42 | 3.5 | 96.5 | 0.0 | -0.65 | 1.28 | 0.53 | 0.79 | 3.88 | 20430 | 2640 | 270 | 0 | 0 | 0 | 0 | logfile |
✔ | 6BVN | 7295 | 2022-04-18 | 2017-12-13 | 4.0 | 3.81 | — | 3.7 | 0.045 | 2.30 | 0.0 | 0.04 | 9.00 | 0.02 | 2.143 | 24.62 | 0.00 | 4.4 | 95.6 | 0.0 | -2.15 | 0.81 | 0.84 | — | 3.7 | 0.004 | 1.61 | 0.0 | 0.04 | 15.20 | 0.01 | 2.016 | 15.82 | 0.64 | 2.0 | 98.0 | 0.0 | 1.31 | 0.88 | 0.82 | 0.85 | — | 210000 | 25920 | 240 | 0 | 60 | 0 | 0 | logfile |
✔ | 3J0G | 5276 | 2022-04-04 | 2011-07-21 | 4.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108000 | 14160 | 240 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CKC | 30385 | 2022-04-14 | 2020-07-16 | 2.9 | 2.95 | — | 2.9 | 0.007 | 0.92 | 0.0 | 0.05 | 16.47 | 0.01 | 2.090 | 5.46 | 0.00 | 2.2 | 97.8 | 0.0 | -0.01 | 0.81 | 0.87 | 3.65 | 2.9 | 0.002 | 0.60 | 0.0 | 0.04 | 17.46 | 0.00 | 2.132 | 5.68 | 1.24 | 1.8 | 98.2 | 0.0 | 0.97 | 1.55 | 0.81 | 0.87 | 3.45 | 150300 | 20820 | 240 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SAG | 10130 | 2022-04-04 | 2019-07-16 | 2.0 | 2.11 | 2.01 | 2.1 | 0.004 | 0.65 | 0.0 | 0.04 | 12.99 | 0.00 | 0.351 | 2.79 | 0.00 | 2.6 | 97.4 | 0.0 | -0.33 | 0.58 | 0.86 | 6.64 | 2.1 | 0.004 | 0.63 | 0.0 | 0.04 | 15.40 | 0.01 | 2.054 | 3.11 | 1.17 | 3.1 | 96.9 | 0.0 | 1.56 | 0.73 | 0.60 | 0.89 | 6.90 | 54080 | 6120 | 240 | 120 | 240 | 2840 | 0 | logfile |
✔ | 3J0G | 5275 | 2022-04-04 | 2011-07-21 | 4.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108000 | 14160 | 240 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QN1 | 4595 | 2022-04-09 | 2019-02-08 | 3.28 | 3.37 | 3.25 | 3.3 | 0.007 | 0.66 | 0.0 | 0.04 | 14.37 | 0.00 | 1.898 | 4.45 | 0.41 | 4.9 | 95.1 | 0.0 | -2.95 | 0.81 | 0.85 | 2.33 | 3.3 | 0.003 | 0.58 | 0.0 | 0.04 | 17.86 | 0.00 | 2.092 | 5.68 | 0.52 | 1.7 | 98.3 | 0.0 | 0.30 | 0.78 | 0.82 | 0.88 | 1.97 | 141480 | 19740 | 240 | 0 | 0 | 0 | 0 | logfile |
✔ | 7o0V | 12680 | 2022-04-04 | 2021-03-27 | 2.5 | 2.50 | — | 2.4 | 0.017 | 4.36 | 0.0 | 0.05 | 21.56 | 0.01 | 2.117 | 1.77 | 0.31 | 1.2 | 98.8 | 0.0 | 1.63 | 0.82 | 0.86 | 5.41 | 2.4 | 0.006 | 1.83 | 0.0 | 0.04 | 21.22 | 0.01 | 2.031 | 7.64 | 1.31 | 0.9 | 99.1 | 0.0 | 3.43 | 0.49 | 0.83 | 0.88 | 4.33 | 55475 | 4947 | 238 | 0 | 317 | 489 | 0 | logfile |
✔ | 7o0X | 12682 | 2022-04-04 | 2021-03-28 | 2.44 | 2.39 | — | 2.3 | 0.017 | 4.32 | 0.0 | 0.05 | 21.28 | 0.01 | 2.099 | 1.63 | 0.23 | 1.4 | 98.6 | 0.0 | 1.33 | 0.82 | 0.86 | 5.55 | 2.3 | 0.005 | 1.81 | 0.0 | 0.04 | 20.95 | 0.00 | 2.064 | 6.87 | 1.05 | 1.1 | 98.9 | 0.0 | 3.69 | 0.48 | 0.82 | 0.87 | 4.38 | 56446 | 5072 | 237 | 0 | 316 | 521 | 0 | logfile |
✔ | 7o0W | 12681 | 2022-04-04 | 2021-03-27 | 2.47 | 2.42 | — | 2.3 | 0.017 | 4.33 | 0.0 | 0.05 | 21.50 | 0.01 | 2.010 | 1.97 | 0.28 | 1.4 | 98.6 | 0.0 | 1.25 | 0.82 | 0.86 | 5.37 | 2.3 | 0.003 | 1.71 | 0.0 | 0.04 | 20.80 | 0.00 | 1.922 | 7.40 | 1.28 | 1.0 | 99.0 | 0.0 | 3.83 | 1.12 | 0.82 | 0.87 | 4.03 | 56476 | 5076 | 236 | 0 | 320 | 406 | 0 | logfile |
✔ | 7o0U | 12679 | 2022-04-04 | 2021-03-27 | 2.35 | 2.42 | — | 2.3 | 0.017 | 4.34 | 0.0 | 0.05 | 21.53 | 0.01 | 2.121 | 1.71 | 0.41 | 1.2 | 98.8 | 0.0 | 1.39 | 0.83 | 0.86 | 5.52 | 2.2 | 0.005 | 1.79 | 0.0 | 0.04 | 20.74 | 0.00 | 1.778 | 7.26 | 1.43 | 1.0 | 99.0 | 0.0 | 3.66 | 1.11 | 0.84 | 0.88 | 4.33 | 55758 | 4972 | 236 | 0 | 320 | 491 | 0 | logfile |
✔ | 5A79 | 3073 | 2022-04-11 | 2015-07-03 | 4.1 | 3.86 | — | 3.8 | 0.008 | 1.75 | 0.0 | 0.09 | 16.89 | 0.01 | 1.146 | 91.59 | 1.96 | 12.1 | 87.9 | 0.0 | -4.64 | 0.54 | 0.76 | — | 3.8 | 0.004 | 0.91 | 0.0 | 0.04 | 15.40 | 0.01 | 2.103 | 16.81 | 0.04 | 9.5 | 89.9 | 0.6 | -2.39 | 0.91 | 0.52 | 0.75 | — | 168165 | 19647 | 222 | 333 | 0 | 0 | 0 | logfile |
✔ | 6F2S | 4174 | 2022-04-14 | 2017-11-27 | 3.3 | 3.35 | — | 3.3 | 0.007 | 1.13 | 10.0 | 0.09 | 16.39 | 0.00 | 1.661 | 2.42 | 1.03 | 5.3 | 94.4 | 0.4 | -3.00 | 0.59 | 0.66 | 0.71 | 3.3 | 0.005 | 0.71 | 1.0 | 0.04 | 18.98 | 0.00 | 2.100 | 11.20 | 0.78 | 3.1 | 96.9 | 0.0 | -1.99 | 1.18 | 0.81 | 0.89 | 3.46 | 191700 | 21760 | 220 | 760 | 0 | 0 | 0 | logfile |
✔ | 5A7A | 3074 | 2022-04-10 | 2015-07-03 | 4.1 | 3.87 | — | 3.9 | 0.008 | 1.83 | 0.0 | 0.09 | 20.18 | 0.01 | 1.270 | 105.04 | 3.97 | 7.0 | 93.0 | 0.0 | -3.08 | 0.56 | 0.76 | — | 3.9 | 0.006 | 1.02 | 1.0 | 0.05 | 17.29 | 0.01 | 2.066 | 21.41 | 0.19 | 9.6 | 90.4 | 0.0 | -1.68 | 1.41 | 0.53 | 0.76 | — | 158894 | 18550 | 212 | 318 | 0 | 0 | 0 | logfile |
✔ | 7MUV | 24023 | 2022-04-14 | 2021-05-14 | 4.6 | 4.89 | — | 4.6 | 0.003 | 0.56 | 0.0 | 0.04 | 13.22 | 0.00 | 2.117 | 15.78 | 8.26 | 5.4 | 94.6 | 0.0 | -0.13 | 0.74 | 0.84 | — | 4.6 | 0.004 | 0.66 | 0.0 | 0.04 | 12.36 | 0.00 | 2.012 | 19.42 | 0.00 | 5.9 | 94.1 | 0.0 | -0.66 | 0.64 | 0.74 | 0.85 | — | 192370 | 24140 | 205 | 0 | 981 | 0 | 0 | logfile |
✔ | 7MUW | 24024 | 2022-04-14 | 2021-05-14 | 4.6 | 5.14 | — | 4.6 | 0.004 | 0.71 | 0.0 | 0.05 | 15.25 | 0.01 | 2.214 | 9.49 | 12.99 | 4.9 | 95.1 | 0.0 | -1.37 | 0.73 | 0.81 | — | 4.6 | 0.003 | 0.62 | 0.0 | 0.04 | 12.75 | 0.00 | 2.106 | 17.86 | 0.01 | 4.7 | 95.3 | 0.0 | -0.41 | 0.69 | 0.74 | 0.85 | — | 192116 | 24106 | 205 | 0 | 981 | 0 | 0 | logfile |
✔ | 7MUQ | 24018 | 2022-04-14 | 2021-05-14 | 4.6 | 4.79 | — | 4.6 | 0.006 | 0.81 | 0.0 | 0.05 | 16.18 | 0.01 | 2.222 | 9.56 | 14.94 | 6.1 | 93.9 | 0.0 | -1.46 | 0.74 | 0.85 | — | 4.6 | 0.005 | 0.74 | 0.0 | 0.05 | 13.28 | 0.00 | 2.031 | 19.16 | 0.00 | 7.0 | 93.0 | 0.0 | -1.03 | 0.70 | 0.74 | 0.86 | — | 192370 | 24140 | 205 | 0 | 981 | 0 | 0 | logfile |
✔ | 7MUS | 24020 | 2022-04-15 | 2021-05-14 | 4.6 | 4.88 | — | 4.6 | 0.005 | 0.78 | 0.0 | 0.05 | 15.99 | 0.01 | 2.234 | 9.66 | 14.12 | 5.8 | 94.2 | 0.0 | -1.40 | 0.73 | 0.82 | — | 4.6 | 0.004 | 0.71 | 0.0 | 0.04 | 13.10 | 0.00 | 2.046 | 20.28 | 0.02 | 6.2 | 93.8 | 0.0 | -0.66 | 0.70 | 0.74 | 0.84 | — | 192370 | 24140 | 205 | 0 | 981 | 0 | 0 | logfile |
✔ | 7MUY | 24026 | 2022-04-14 | 2021-05-14 | 4.6 | 5.12 | — | 4.6 | 0.004 | 0.72 | 0.0 | 0.05 | 15.34 | 0.01 | 2.239 | 9.85 | 12.99 | 5.3 | 94.7 | 0.0 | -1.27 | 0.72 | 0.79 | — | 4.6 | 0.003 | 0.65 | 0.0 | 0.04 | 12.85 | 0.00 | 2.055 | 20.25 | 0.01 | 5.0 | 95.0 | 0.0 | -0.59 | 0.69 | 0.74 | 0.84 | — | 192370 | 24140 | 205 | 0 | 981 | 0 | 0 | logfile |
✔ | 7MUC | 24004 | 2022-04-13 | 2021-05-14 | 3.8 | 4.24 | — | 4.1 | 0.012 | 1.82 | 155.0 | 0.09 | 15.73 | 0.01 | 1.769 | 6.24 | 4.78 | 5.2 | 94.8 | 0.0 | -0.65 | 0.73 | 0.83 | 1.53 | 4.1 | 0.004 | 0.72 | 2.0 | 0.04 | 15.88 | 0.00 | 1.503 | 12.28 | 0.22 | 4.3 | 95.7 | 0.0 | 0.36 | 1.68 | 0.74 | 0.85 | 1.69 | 180380 | 22474 | 189 | 0 | 981 | 0 | 0 | logfile |