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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7o0U | 12679 | 2022-12-11 | 2021-03-27 | 2.35 | 2.42 | — | 2.3 | 0.017 | 4.33 | 0.0 | 0.05 | 22.25 | 0.01 | 2.121 | 2.09 | 0.41 | 1.2 | 98.8 | 0.0 | 1.39 | 0.83 | 0.86 | 5.52 | 2.3 | 0.003 | 1.71 | 0.0 | 0.03 | 20.54 | 0.00 | 1.837 | 7.07 | 1.12 | 0.9 | 99.1 | 0.0 | 4.04 | 0.50 | 0.84 | 0.89 | 4.10 | 55758 | 4972 | 236 | 0 | 320 | 491 | 0 | logfile |
✔ | 5VLZ | 8709 | 2022-12-17 | 2017-04-26 | 4.4 | 4.55 | — | 4.4 | 0.006 | 0.89 | 0.0 | 0.00 | 5.88 | 0.00 | 2.272 | 2.04 | 0.00 | 6.1 | 93.9 | 0.0 | -1.92 | 0.80 | 0.66 | — | 4.4 | 0.003 | 0.81 | 0.0 | 0.00 | 5.63 | 0.00 | 2.281 | 1.18 | 0.00 | 6.0 | 94.0 | 0.0 | -1.57 | 1.65 | 0.83 | 0.78 | — | 96897 | 24179 | 181 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RRS | 4989 | 2022-12-17 | 2019-05-20 | 3.9 | 4.30 | 4.41 | 3.8 | 0.013 | 2.10 | 0.0 | 0.00 | 2.04 | 0.01 | 2.364 | 0.79 | 0.00 | 3.9 | 95.3 | 0.8 | -0.85 | 0.56 | 0.64 | — | 3.8 | 0.004 | 0.88 | 0.0 | 0.00 | 7.55 | 0.00 | 2.175 | 1.89 | 0.00 | 14.6 | 85.4 | 0.0 | -1.44 | 2.05 | 0.80 | 0.71 | — | 93060 | 23220 | 180 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UJL | 26566 | 2022-12-16 | 2022-03-31 | 3.3 | 3.53 | 3.27 | 3.4 | 0.015 | 2.11 | 120.0 | 0.14 | 20.03 | 0.02 | 1.760 | 6.55 | 0.00 | 5.1 | 94.9 | 0.0 | -1.45 | 0.58 | 0.70 | 1.54 | 3.4 | 0.005 | 0.69 | 0.0 | 0.05 | 20.73 | 0.01 | 2.179 | 6.66 | 0.61 | 3.2 | 96.8 | 0.0 | 0.30 | 1.05 | 0.68 | 0.92 | 3.62 | 86820 | 9660 | 180 | 480 | 0 | 0 | 0 | logfile |
✔ | 5LEG | 4042 | 2022-12-21 | 2016-06-29 | 3.6 | 3.32 | — | 3.8 | 0.012 | 1.21 | 0.0 | 0.04 | 17.49 | 0.00 | 2.383 | 44.75 | 0.00 | 8.2 | 91.8 | 0.0 | -5.72 | 0.71 | 0.75 | 3.43 | 3.7 | 0.003 | 0.74 | 0.0 | 0.04 | 15.84 | 0.00 | 2.152 | 10.97 | 0.43 | 4.5 | 95.5 | 0.0 | -1.02 | 1.55 | 0.71 | 0.83 | 2.12 | 41355 | 5040 | 155 | 0 | 75 | 0 | 0 | logfile |
✔ | 6WL7 | 21816 | 2022-12-18 | 2020-04-18 | 3.8 | 4.18 | — | 3.9 | 0.006 | 0.58 | 0.0 | 0.04 | 14.93 | 0.00 | 2.204 | 8.50 | 0.00 | 1.2 | 98.8 | 0.0 | 3.28 | 0.79 | 0.87 | 2.36 | 3.9 | 0.005 | 0.98 | 0.0 | 0.04 | 17.43 | 0.00 | 2.093 | 15.88 | 2.00 | 0.0 | 100.0 | 0.0 | 4.88 | 1.01 | 0.79 | 0.86 | 1.96 | 34350 | 4350 | 150 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PQD | 13590 | 2022-12-21 | 2021-09-17 | 2.9 | 2.29 | — | 2.7 | 0.016 | 4.87 | 0.0 | 0.10 | 18.97 | 0.01 | 2.065 | 2.13 | 0.36 | 2.2 | 97.7 | 0.1 | -0.58 | 0.65 | 0.76 | 4.80 | 2.7 | 0.006 | 2.31 | 0.0 | 0.04 | 20.01 | 0.01 | 1.832 | 11.42 | 1.77 | 2.1 | 97.9 | 0.0 | 1.78 | 0.55 | 0.70 | 0.84 | 3.72 | 45952 | 4698 | 144 | 0 | 142 | 144 | 0 | logfile |
✔ | 7LQH | 23486 | 2022-12-12 | 2021-02-13 | 3.4 | 3.12 | — | 3.4 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 2.098 | 31.15 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.59 | 0.80 | 5.83 | 3.2 | 0.111 | 4.24 | 195.0 | 0.31 | 24.08 | 0.02 | 1.604 | 112.51 | 5.21 | 40.1 | 59.5 | 0.3 | -8.01 | 3.49 | 0.65 | 0.87 | 3.36 | 12096 | 1152 | 144 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LQG | 23485 | 2022-12-12 | 2021-02-13 | 3.4 | 3.13 | — | 3.3 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 1.842 | 31.02 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.61 | 0.81 | 5.57 | 3.2 | 0.110 | 4.37 | 186.0 | 0.30 | 23.68 | 0.02 | 1.819 | 119.87 | 4.75 | 35.8 | 64.2 | 0.0 | -8.04 | 1.65 | 0.67 | 0.86 | 3.90 | 12096 | 1152 | 144 | 0 | 0 | 0 | 0 | logfile |
✘ | 7VD5 | 31905 | 2022-12-19 | 2021-09-06 | 2.5 | 2.65 | — | 2.5 | 0.028 | 2.60 | 10.0 | 0.18 | 21.80 | 0.02 | 1.208 | 8.37 | 3.02 | 4.7 | 95.2 | 0.1 | -4.47 | 0.81 | 0.83 | 3.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 100884 | 9450 | 143 | 0 | 670 | 52 | 0 | logfile |
✘ | 7Pi0 | 13429 | 2022-12-19 | 2021-08-19 | 2.43 | 2.64 | — | 2.5 | 0.020 | 2.11 | 3.0 | 0.18 | 19.20 | 0.01 | 1.021 | 10.26 | 0.08 | 4.3 | 95.5 | 0.2 | -0.19 | 0.72 | 0.84 | 4.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 78426 | 7442 | 136 | 0 | 361 | 2121 | 0 | logfile |
✘ | 5XNL | 6741 | 2022-12-19 | 2017-05-23 | 2.7 | 2.75 | — | 2.8 | 0.013 | 1.60 | 0.0 | 0.09 | 15.86 | 0.02 | 1.207 | 10.25 | 0.08 | 2.1 | 97.9 | 0.0 | -3.12 | 0.55 | 0.78 | 3.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98986 | 9364 | 136 | 0 | 490 | 1076 | 0 | logfile |
✔ | 7VY2 | 32192 | 2022-12-21 | 2021-11-13 | 2.75 | 2.61 | — | 2.7 | 0.020 | 1.91 | 0.0 | 0.06 | 18.90 | 0.02 | 1.943 | 15.59 | 3.39 | 2.9 | 97.1 | 0.0 | 1.62 | 0.71 | 0.79 | 3.16 | 2.7 | 0.003 | 0.72 | 0.0 | 0.04 | 18.29 | 0.00 | 1.926 | 14.04 | 2.59 | 2.4 | 97.6 | 0.0 | 2.04 | 0.47 | 0.72 | 0.83 | 2.72 | 46292 | 4534 | 131 | 0 | 201 | 0 | 0 | logfile |
✔ | 7VoR | 32058 | 2022-12-21 | 2021-10-14 | 2.74 | 2.87 | — | 2.8 | 0.007 | 0.96 | 0.0 | 0.04 | 14.78 | 0.00 | 2.138 | 8.49 | 0.37 | 1.8 | 98.2 | 0.0 | 2.88 | 0.76 | 0.85 | 3.78 | 2.8 | 0.003 | 0.63 | 0.0 | 0.04 | 16.81 | 0.00 | 2.176 | 10.15 | 1.57 | 1.3 | 98.7 | 0.0 | 2.71 | 0.46 | 0.76 | 0.87 | 3.39 | 44980 | 4614 | 128 | 0 | 148 | 0 | 0 | logfile |
✘ | 6JLU | 9839 | 2022-12-19 | 2019-03-06 | 3.02 | 3.12 | — | 3.2 | 0.015 | 2.39 | 11.0 | 0.15 | 18.61 | 0.01 | 1.177 | 12.95 | 0.10 | 8.6 | 90.9 | 0.5 | -4.89 | 0.64 | 0.73 | 2.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 102777 | 9704 | 128 | 0 | 820 | 1 | 0 | logfile |
✔ | 7VoT | 32059 | 2022-12-21 | 2021-10-14 | 2.9 | 3.04 | — | 3.0 | 0.006 | 0.80 | 0.0 | 0.04 | 14.47 | 0.01 | 2.147 | 9.11 | 0.37 | 1.5 | 98.5 | 0.0 | 2.64 | 0.76 | 0.82 | 4.12 | 3.0 | 0.003 | 0.69 | 0.0 | 0.04 | 17.60 | 0.00 | 2.162 | 13.90 | 2.42 | 1.7 | 98.3 | 0.0 | 2.31 | 1.19 | 0.76 | 0.85 | 3.41 | 44984 | 4594 | 128 | 0 | 152 | 0 | 0 | logfile |
✘ | 6KAC | 9955 | 2022-12-19 | 2019-06-21 | 2.7 | 2.84 | — | 2.8 | 0.011 | 1.49 | 0.0 | 0.07 | 14.98 | 0.02 | 1.198 | 8.41 | 0.64 | 4.9 | 95.0 | 0.1 | -4.64 | 0.72 | 0.84 | 4.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 77947 | 7858 | 126 | 0 | 318 | 595 | 0 | logfile |
✘ | 7TXJ | 26159 | 2022-12-19 | 2022-02-09 | 3.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 101029 | 10912 | 124 | 744 | 0 | 0 | 0 | logfile |
✔ | 7VA9 | 31835 | 2022-12-21 | 2021-08-27 | 3.08 | 2.58 | — | 2.9 | 0.020 | 2.12 | 0.0 | 0.05 | 18.34 | 0.05 | 1.992 | 15.70 | 2.83 | 2.3 | 97.7 | 0.0 | 1.34 | 0.60 | 0.79 | 3.23 | 2.8 | 0.003 | 0.70 | 0.0 | 0.04 | 17.20 | 0.00 | 1.633 | 7.83 | 0.25 | 1.4 | 98.6 | 0.0 | 2.69 | 0.52 | 0.63 | 0.83 | 3.05 | 42176 | 4350 | 124 | 0 | 131 | 0 | 0 | logfile |
✘ | 7Pi5 | 13430 | 2022-12-19 | 2021-08-19 | 2.78 | 3.12 | — | 3.1 | 0.020 | 2.06 | 0.0 | 0.10 | 18.43 | 0.01 | 1.178 | 10.77 | 0.12 | 5.3 | 94.3 | 0.4 | -0.72 | 0.66 | 0.82 | 3.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 76287 | 7455 | 123 | 0 | 343 | 718 | 0 | logfile |