Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7o0U	12679	2022-12-11	2021-03-27	2.35	2.42	—	2.3	0.017	4.33	0.0	0.05	22.25	0.01	2.121	2.09	0.41	1.2	98.8	0.0	1.39	0.83	0.86	5.52	2.3	0.003	1.71	0.0	0.03	20.54	0.00	1.837	7.07	1.12	0.9	99.1	0.0	4.04	0.50	0.84	0.89	4.10	55758	4972	236	0	320	491	0	logfile
✔	5VLZ	8709	2022-12-17	2017-04-26	4.4	4.55	—	4.4	0.006	0.89	0.0	0.00	5.88	0.00	2.272	2.04	0.00	6.1	93.9	0.0	-1.92	0.80	0.66	—	4.4	0.003	0.81	0.0	0.00	5.63	0.00	2.281	1.18	0.00	6.0	94.0	0.0	-1.57	1.65	0.83	0.78	—	96897	24179	181	0	0	0	0	logfile
✔	6RRS	4989	2022-12-17	2019-05-20	3.9	4.30	4.41	3.8	0.013	2.10	0.0	0.00	2.04	0.01	2.364	0.79	0.00	3.9	95.3	0.8	-0.85	0.56	0.64	—	3.8	0.004	0.88	0.0	0.00	7.55	0.00	2.175	1.89	0.00	14.6	85.4	0.0	-1.44	2.05	0.80	0.71	—	93060	23220	180	0	0	0	0	logfile
✔	7UJL	26566	2022-12-16	2022-03-31	3.3	3.53	3.27	3.4	0.015	2.11	120.0	0.14	20.03	0.02	1.760	6.55	0.00	5.1	94.9	0.0	-1.45	0.58	0.70	1.54	3.4	0.005	0.69	0.0	0.05	20.73	0.01	2.179	6.66	0.61	3.2	96.8	0.0	0.30	1.05	0.68	0.92	3.62	86820	9660	180	480	0	0	0	logfile
✔	5LEG	4042	2022-12-21	2016-06-29	3.6	3.32	—	3.8	0.012	1.21	0.0	0.04	17.49	0.00	2.383	44.75	0.00	8.2	91.8	0.0	-5.72	0.71	0.75	3.43	3.7	0.003	0.74	0.0	0.04	15.84	0.00	2.152	10.97	0.43	4.5	95.5	0.0	-1.02	1.55	0.71	0.83	2.12	41355	5040	155	0	75	0	0	logfile
✔	6WL7	21816	2022-12-18	2020-04-18	3.8	4.18	—	3.9	0.006	0.58	0.0	0.04	14.93	0.00	2.204	8.50	0.00	1.2	98.8	0.0	3.28	0.79	0.87	2.36	3.9	0.005	0.98	0.0	0.04	17.43	0.00	2.093	15.88	2.00	0.0	100.0	0.0	4.88	1.01	0.79	0.86	1.96	34350	4350	150	0	0	0	0	logfile
✔	7PQD	13590	2022-12-21	2021-09-17	2.9	2.29	—	2.7	0.016	4.87	0.0	0.10	18.97	0.01	2.065	2.13	0.36	2.2	97.7	0.1	-0.58	0.65	0.76	4.80	2.7	0.006	2.31	0.0	0.04	20.01	0.01	1.832	11.42	1.77	2.1	97.9	0.0	1.78	0.55	0.70	0.84	3.72	45952	4698	144	0	142	144	0	logfile
✔	7LQH	23486	2022-12-12	2021-02-13	3.4	3.12	—	3.4	0.016	1.42	0.0	0.04	20.72	0.00	2.098	31.15	14.58	0.0	100.0	0.0	-5.94	0.59	0.80	5.83	3.2	0.111	4.24	195.0	0.31	24.08	0.02	1.604	112.51	5.21	40.1	59.5	0.3	-8.01	3.49	0.65	0.87	3.36	12096	1152	144	0	0	0	0	logfile
✔	7LQG	23485	2022-12-12	2021-02-13	3.4	3.13	—	3.3	0.016	1.42	0.0	0.04	20.72	0.00	1.842	31.02	14.58	0.0	100.0	0.0	-5.94	0.61	0.81	5.57	3.2	0.110	4.37	186.0	0.30	23.68	0.02	1.819	119.87	4.75	35.8	64.2	0.0	-8.04	1.65	0.67	0.86	3.90	12096	1152	144	0	0	0	0	logfile
✘	7VD5	31905	2022-12-19	2021-09-06	2.5	2.65	—	2.5	0.028	2.60	10.0	0.18	21.80	0.02	1.208	8.37	3.02	4.7	95.2	0.1	-4.47	0.81	0.83	3.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	100884	9450	143	0	670	52	0	logfile
✘	7Pi0	13429	2022-12-19	2021-08-19	2.43	2.64	—	2.5	0.020	2.11	3.0	0.18	19.20	0.01	1.021	10.26	0.08	4.3	95.5	0.2	-0.19	0.72	0.84	4.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	78426	7442	136	0	361	2121	0	logfile
✘	5XNL	6741	2022-12-19	2017-05-23	2.7	2.75	—	2.8	0.013	1.60	0.0	0.09	15.86	0.02	1.207	10.25	0.08	2.1	97.9	0.0	-3.12	0.55	0.78	3.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	98986	9364	136	0	490	1076	0	logfile
✔	7VY2	32192	2022-12-21	2021-11-13	2.75	2.61	—	2.7	0.020	1.91	0.0	0.06	18.90	0.02	1.943	15.59	3.39	2.9	97.1	0.0	1.62	0.71	0.79	3.16	2.7	0.003	0.72	0.0	0.04	18.29	0.00	1.926	14.04	2.59	2.4	97.6	0.0	2.04	0.47	0.72	0.83	2.72	46292	4534	131	0	201	0	0	logfile
✔	7VoR	32058	2022-12-21	2021-10-14	2.74	2.87	—	2.8	0.007	0.96	0.0	0.04	14.78	0.00	2.138	8.49	0.37	1.8	98.2	0.0	2.88	0.76	0.85	3.78	2.8	0.003	0.63	0.0	0.04	16.81	0.00	2.176	10.15	1.57	1.3	98.7	0.0	2.71	0.46	0.76	0.87	3.39	44980	4614	128	0	148	0	0	logfile
✘	6JLU	9839	2022-12-19	2019-03-06	3.02	3.12	—	3.2	0.015	2.39	11.0	0.15	18.61	0.01	1.177	12.95	0.10	8.6	90.9	0.5	-4.89	0.64	0.73	2.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	102777	9704	128	0	820	1	0	logfile
✔	7VoT	32059	2022-12-21	2021-10-14	2.9	3.04	—	3.0	0.006	0.80	0.0	0.04	14.47	0.01	2.147	9.11	0.37	1.5	98.5	0.0	2.64	0.76	0.82	4.12	3.0	0.003	0.69	0.0	0.04	17.60	0.00	2.162	13.90	2.42	1.7	98.3	0.0	2.31	1.19	0.76	0.85	3.41	44984	4594	128	0	152	0	0	logfile
✘	6KAC	9955	2022-12-19	2019-06-21	2.7	2.84	—	2.8	0.011	1.49	0.0	0.07	14.98	0.02	1.198	8.41	0.64	4.9	95.0	0.1	-4.64	0.72	0.84	4.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	77947	7858	126	0	318	595	0	logfile
✘	7TXJ	26159	2022-12-19	2022-02-09	3.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	101029	10912	124	744	0	0	0	logfile
✔	7VA9	31835	2022-12-21	2021-08-27	3.08	2.58	—	2.9	0.020	2.12	0.0	0.05	18.34	0.05	1.992	15.70	2.83	2.3	97.7	0.0	1.34	0.60	0.79	3.23	2.8	0.003	0.70	0.0	0.04	17.20	0.00	1.633	7.83	0.25	1.4	98.6	0.0	2.69	0.52	0.63	0.83	3.05	42176	4350	124	0	131	0	0	logfile
✘	7Pi5	13430	2022-12-19	2021-08-19	2.78	3.12	—	3.1	0.020	2.06	0.0	0.10	18.43	0.01	1.178	10.77	0.12	5.3	94.3	0.4	-0.72	0.66	0.82	3.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	76287	7455	123	0	343	718	0	logfile

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