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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8E35 | 27857 | 2023-12-09 | 2022-08-16 | 2.27 | 2.92 | 2.48 | 2.8 | 0.009 | 0.45 | 0.0 | 0.03 | 21.84 | 0.02 | 2.028 | 1.04 | 0.00 | 4.6 | 95.4 | 0.0 | 0.37 | 0.75 | 0.86 | 3.34 | 2.7 | 0.006 | 0.68 | 0.0 | 0.04 | 21.88 | 0.01 | 1.909 | 2.13 | 0.85 | 5.9 | 94.0 | 0.1 | -0.81 | 1.10 | 0.72 | 0.91 | 5.74 | 115840 | 1179 | 11 | 3016 | 1 | 1 | 41853 | logfile |
✘ | 8E44 | 27879 | 2023-12-09 | 2022-08-17 | 2.53 | 3.06 | 2.75 | 2.9 | 0.005 | 0.41 | 0.0 | 0.04 | 22.34 | 0.02 | 1.946 | 2.19 | 0.11 | 4.6 | 95.4 | 0.0 | 0.86 | 0.73 | 0.91 | 4.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115856 | 1179 | 11 | 3016 | 1 | 0 | 41883 | logfile |
✔ | 8E30 | 27852 | 2023-12-09 | 2022-08-16 | 1.91 | 2.70 | 2.42 | 2.5 | 0.006 | 0.58 | 0.0 | 0.04 | 22.65 | 0.02 | 1.967 | 2.02 | 0.64 | 5.3 | 94.5 | 0.2 | 0.82 | 0.74 | 0.91 | 5.44 | 2.5 | 0.005 | 0.65 | 0.0 | 0.05 | 22.47 | 0.01 | 1.965 | 3.42 | 1.59 | 5.8 | 94.0 | 0.3 | 0.37 | 1.18 | 0.73 | 0.91 | 5.73 | 115737 | 1179 | 11 | 3016 | 1 | 0 | 41820 | logfile |
✔ | 8E32 | 27854 | 2023-12-09 | 2022-08-16 | 2.35 | 2.96 | 2.64 | 2.8 | 0.006 | 0.51 | 0.0 | 0.03 | 22.21 | 0.02 | 2.005 | 1.20 | 0.74 | 4.6 | 95.4 | 0.0 | 0.03 | 0.74 | 0.91 | 5.35 | 2.8 | 0.006 | 0.65 | 0.0 | 0.04 | 22.09 | 0.01 | 1.957 | 1.76 | 1.27 | 5.7 | 94.3 | 0.0 | -0.67 | 0.26 | 0.70 | 0.90 | 5.49 | 115899 | 1179 | 11 | 3016 | 2 | 1 | 41852 | logfile |
✔ | 8E42 | 27877 | 2023-12-09 | 2022-08-17 | 2.29 | 2.95 | 2.61 | 2.7 | 0.005 | 0.38 | 0.0 | 0.07 | 22.64 | 0.02 | 1.931 | 1.94 | 0.53 | 4.0 | 96.0 | 0.0 | 0.92 | 0.73 | 0.91 | 4.67 | 2.7 | 0.005 | 0.60 | 0.0 | 0.04 | 22.58 | 0.01 | 1.778 | 3.28 | 0.42 | 5.2 | 94.8 | 0.0 | 0.20 | 0.28 | 0.71 | 0.90 | 4.99 | 115718 | 1179 | 11 | 3016 | 2 | 0 | 41815 | logfile |
✔ | 8E49 | 27884 | 2023-12-09 | 2022-08-17 | 2.05 | 2.78 | 2.50 | 2.5 | 0.005 | 0.42 | 0.0 | 0.03 | 22.35 | 0.02 | 1.945 | 1.31 | 0.85 | 4.6 | 95.4 | 0.0 | 0.91 | 0.71 | 0.91 | 5.79 | 2.6 | 0.004 | 0.59 | 0.0 | 0.04 | 22.24 | 0.01 | 1.941 | 2.58 | 1.27 | 5.4 | 94.5 | 0.1 | 0.11 | 0.23 | 0.70 | 0.92 | 5.98 | 115871 | 1179 | 11 | 3016 | 1 | 0 | 41885 | logfile |
✔ | 8E48 | 27883 | 2023-12-09 | 2022-08-17 | 2.27 | 2.95 | 2.47 | 2.8 | 0.005 | 0.52 | 0.0 | 0.03 | 21.95 | 0.02 | 1.808 | 1.21 | 0.53 | 4.6 | 95.4 | 0.0 | 0.36 | 0.69 | 0.84 | 3.07 | 2.7 | 0.004 | 0.71 | 0.0 | 0.04 | 21.82 | 0.01 | 1.776 | 1.69 | 1.91 | 6.3 | 93.6 | 0.1 | -0.60 | 0.58 | 0.71 | 0.90 | 5.16 | 115959 | 1179 | 11 | 3016 | 1 | 0 | 41918 | logfile |
✔ | 8E41 | 27876 | 2023-12-09 | 2022-08-17 | 2.13 | 2.86 | 2.57 | 2.6 | 0.005 | 0.38 | 1.0 | 0.02 | 22.46 | 0.02 | 1.983 | 1.89 | 0.85 | 5.2 | 94.8 | 0.0 | 0.82 | 0.73 | 0.90 | 5.26 | 2.6 | 0.006 | 0.59 | 1.0 | 0.04 | 22.37 | 0.01 | 1.986 | 3.12 | 1.27 | 5.6 | 94.3 | 0.1 | 0.21 | 0.23 | 0.73 | 0.91 | 5.34 | 115744 | 1186 | 12 | 3016 | 1 | 0 | 41833 | logfile |
✔ | 8E47 | 27882 | 2023-12-09 | 2022-08-17 | 2.32 | 2.95 | 2.51 | 2.8 | 0.005 | 0.42 | 0.0 | 0.09 | 21.98 | 0.02 | 1.901 | 1.08 | 0.96 | 3.9 | 96.1 | 0.0 | 0.60 | 0.74 | 0.91 | 4.96 | 2.8 | 0.005 | 0.68 | 0.0 | 0.05 | 21.88 | 0.01 | 1.876 | 1.98 | 1.49 | 5.4 | 94.5 | 0.1 | -0.74 | 0.38 | 0.71 | 0.90 | 5.43 | 115917 | 1179 | 11 | 3016 | 1 | 0 | 41886 | logfile |
✔ | 8E3M | 27868 | 2023-12-09 | 2022-08-17 | 2.25 | 2.92 | 2.58 | 2.7 | 0.005 | 0.42 | 0.0 | 0.07 | 22.67 | 0.02 | 1.973 | 2.01 | 1.27 | 4.0 | 96.0 | 0.0 | 0.83 | 0.71 | 0.91 | 5.18 | 2.7 | 0.005 | 0.62 | 0.0 | 0.04 | 22.65 | 0.01 | 1.945 | 3.50 | 1.06 | 5.2 | 94.7 | 0.2 | 0.19 | 0.25 | 0.69 | 0.90 | 5.50 | 115715 | 1179 | 11 | 3016 | 1 | 0 | 41815 | logfile |
✔ | 8E3o | 27869 | 2023-12-09 | 2022-08-17 | 1.99 | 2.75 | 2.52 | 2.6 | 0.006 | 0.42 | 0.0 | 0.05 | 22.74 | 0.02 | 1.955 | 2.37 | 0.74 | 4.6 | 95.1 | 0.3 | -2.75 | 0.70 | 0.88 | 5.93 | 2.5 | 0.006 | 0.63 | 0.0 | 0.04 | 22.79 | 0.01 | 1.951 | 4.04 | 1.49 | 5.2 | 94.7 | 0.2 | 0.10 | 1.01 | 0.69 | 0.89 | 5.92 | 115702 | 1179 | 11 | 3015 | 2 | 0 | 41809 | logfile |
✔ | 8E33 | 27855 | 2023-12-09 | 2022-08-16 | 2.23 | 2.91 | 2.58 | 2.7 | 0.006 | 0.50 | 0.0 | 0.04 | 22.67 | 0.02 | 1.965 | 2.00 | 0.53 | 4.6 | 95.4 | 0.0 | 0.48 | 0.70 | 0.90 | 5.42 | 2.7 | 0.005 | 0.59 | 0.0 | 0.04 | 22.49 | 0.01 | 1.970 | 3.46 | 1.17 | 6.1 | 93.8 | 0.1 | 0.05 | 0.22 | 0.69 | 0.89 | 5.49 | 115769 | 1179 | 11 | 3015 | 1 | 1 | 41830 | logfile |
✔ | 8E46 | 27881 | 2023-12-09 | 2022-08-17 | 2.32 | 2.94 | 2.69 | 2.8 | 0.006 | 0.41 | 0.0 | 0.08 | 22.17 | 0.02 | 2.015 | 1.38 | 0.53 | 5.1 | 94.8 | 0.1 | -0.35 | 0.70 | 0.90 | 5.69 | 2.8 | 0.005 | 0.64 | 0.0 | 0.04 | 22.14 | 0.01 | 1.947 | 1.88 | 0.85 | 5.8 | 94.0 | 0.3 | -0.45 | 0.59 | 0.68 | 0.90 | 5.87 | 115754 | 1179 | 11 | 3015 | 1 | 0 | 41809 | logfile |
✔ | 8E43 | 27878 | 2023-12-09 | 2022-08-17 | 2.09 | 2.88 | 2.49 | 2.6 | 0.006 | 0.57 | 0.0 | 0.03 | 22.57 | 0.02 | 1.945 | 2.00 | 1.06 | 4.9 | 94.8 | 0.3 | -2.82 | 0.73 | 0.90 | 5.55 | 2.6 | 0.006 | 0.60 | 0.0 | 0.04 | 22.46 | 0.01 | 1.914 | 3.37 | 1.38 | 6.0 | 93.6 | 0.4 | -0.29 | 0.38 | 0.72 | 0.91 | 5.17 | 115905 | 1179 | 11 | 3015 | 1 | 0 | 41874 | logfile |
✔ | 8E36 | 27858 | 2023-12-09 | 2022-08-16 | 2.38 | 3.00 | 2.65 | 2.8 | 0.006 | 0.57 | 0.0 | 0.02 | 22.78 | 0.02 | 1.934 | 2.28 | 0.32 | 4.2 | 95.8 | 0.0 | 1.12 | 0.72 | 0.90 | 4.41 | 2.8 | 0.005 | 0.59 | 0.0 | 0.04 | 22.70 | 0.01 | 1.925 | 4.06 | 0.85 | 5.6 | 94.3 | 0.1 | 0.14 | 0.87 | 0.69 | 0.89 | 4.71 | 115712 | 1179 | 11 | 3015 | 1 | 0 | 41809 | logfile |
✔ | 8E45 | 27880 | 2023-12-09 | 2022-08-17 | 2.3 | 2.93 | 2.71 | 2.8 | 0.005 | 0.39 | 0.0 | 0.03 | 22.10 | 0.02 | 1.957 | 1.35 | 0.74 | 4.5 | 95.4 | 0.2 | 0.33 | 0.71 | 0.90 | 5.24 | 2.8 | 0.005 | 0.61 | 0.0 | 0.04 | 22.04 | 0.01 | 1.940 | 1.82 | 1.70 | 5.7 | 94.1 | 0.3 | -0.35 | 0.58 | 0.69 | 0.90 | 5.42 | 115749 | 1179 | 11 | 3015 | 1 | 0 | 41831 | logfile |
✔ | 6YLY | 10842 | 2023-12-10 | 2020-04-07 | 3.8 | 3.72 | 3.83 | 3.7 | 0.013 | 1.20 | 3.0 | 0.06 | 22.14 | 0.01 | 1.952 | 6.32 | 0.11 | 2.4 | 97.5 | 0.0 | -4.15 | 0.80 | 0.80 | 1.65 | 3.7 | 0.007 | 0.85 | 1.0 | 0.04 | 22.11 | 0.01 | 1.822 | 20.96 | 0.96 | 9.8 | 90.1 | 0.1 | -1.95 | 0.65 | 0.81 | 0.82 | 1.37 | 120663 | 7352 | 52 | 2899 | 3 | 0 | 0 | logfile |
✔ | 5XY3 | 6784 | 2023-12-07 | 2017-07-06 | 3.2 | 3.24 | — | 3.2 | 0.006 | 1.04 | 7.0 | 0.09 | 21.80 | 0.00 | 1.123 | 6.22 | 3.45 | 6.0 | 92.7 | 1.3 | -3.33 | 0.61 | 0.76 | 2.54 | 3.2 | 0.004 | 0.65 | 0.0 | 0.04 | 21.44 | 0.00 | 2.007 | 8.09 | 0.43 | 5.4 | 94.3 | 0.4 | -1.15 | 0.60 | 0.77 | 0.85 | 2.16 | 107145 | 5917 | 43 | 2815 | 0 | 0 | 0 | logfile |
✘ | 6YLX | 10841 | 2023-12-10 | 2020-04-07 | 3.9 | 3.78 | 3.86 | 3.8 | 0.019 | 1.57 | 1.0 | 0.08 | 22.23 | 0.01 | 1.989 | 6.50 | 0.65 | 3.4 | 96.6 | 0.0 | -3.91 | 0.81 | 0.81 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 118882 | 7493 | 47 | 2757 | 0 | 0 | 0 | logfile |
✔ | 7PWG | 13681 | 2023-12-08 | 2021-10-06 | 2.75 | 2.35 | — | 2.5 | 0.010 | 1.07 | 0.0 | 0.06 | 23.36 | 0.02 | 1.376 | 3.78 | 6.08 | 4.4 | 95.6 | 0.0 | -2.19 | 0.76 | 0.88 | 4.64 | 2.6 | 0.004 | 0.77 | 0.0 | 0.04 | 23.32 | 0.01 | 1.775 | 4.37 | 3.62 | 3.2 | 96.8 | 0.0 | -0.24 | 0.30 | 0.76 | 0.87 | 3.92 | 109151 | 5769 | 105 | 2722 | 294 | 4397 | 0 | logfile |