Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6ND4	0441	2023-02-24	2018-12-13	4.3	4.41	—	4.2	0.010	1.03	0.0	0.06	14.55	0.02	2.230	5.19	0.00	6.4	93.6	0.1	-3.63	0.80	0.66	—	4.2	0.007	1.08	0.0	0.05	15.04	0.01	1.926	19.87	0.00	17.6	82.3	0.1	-3.59	1.14	0.85	0.77	—	63993	9225	30	551	1306	0	0	logfile
✔	7oLE	12979	2023-02-26	2021-05-19	3.41	4.34	3.59	3.9	0.013	1.74	25.0	0.10	15.12	0.01	1.371	42.05	0.38	17.2	81.9	0.8	-5.68	0.55	0.26	-0.19	3.6	0.003	0.80	0.0	0.04	15.95	0.01	2.131	19.19	0.29	10.0	89.8	0.2	-1.90	1.96	0.77	0.76	0.84	26995	2899	14	0	1129	0	0	logfile
✔	3JAC	6343	2023-02-21	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	57.64	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.73	0.0	0.06	13.93	0.01	1.944	77.57	0.00	26.7	71.5	1.8	-5.39	3.71	0.54	0.61	—	15741	1716	3	0	1038	0	0	logfile
✔	5AJ3	2913	2023-02-25	2015-02-20	3.6	3.73	—	3.7	0.018	1.28	0.0	0.05	18.85	0.07	1.844	24.00	10.71	3.9	96.0	0.1	-3.65	0.86	0.86	2.03	3.6	0.004	1.41	0.0	0.04	19.14	0.02	1.819	16.05	0.59	4.7	95.3	0.0	0.16	1.64	0.84	0.82	1.63	66363	4665	44	1102	1006	118	0	logfile
✘	4CE4	2490	2023-02-24	2013-11-08	4.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65473	3572	40	1437	984	0	0	logfile
✔	6BWi	7299	2023-02-24	2017-12-15	3.7	3.76	—	3.7	0.011	1.39	4.0	0.09	12.08	0.01	1.745	22.56	1.36	8.1	91.5	0.4	-5.08	0.67	0.73	2.06	3.7	0.089	4.98	126.0	0.27	21.71	0.03	1.598	112.51	5.51	44.2	49.1	6.7	-8.56	2.58	0.80	0.86	2.00	23491	2484	8	0	813	0	0	logfile
✔	5oF4	3802	2023-02-22	2017-07-10	4.4	4.33	4.38	4.2	0.022	2.15	19.0	0.12	12.45	0.01	1.962	9.84	1.90	11.5	87.8	0.7	-4.34	0.78	0.76	—	4.2	0.006	0.93	0.0	0.05	12.92	0.01	2.076	29.28	0.00	12.5	87.5	0.0	-2.75	1.71	0.77	0.72	—	17200	1718	11	0	746	0	0	logfile
✔	6CB1	7445	2023-02-27	2018-02-01	4.6	4.77	—	4.6	0.006	1.02	0.0	0.06	16.94	0.00	0.266	5.97	0.00	5.0	94.8	0.1	-2.68	0.66	0.49	—	4.5	0.004	0.79	0.0	0.04	18.17	0.00	2.026	21.56	0.00	8.9	91.1	0.0	-1.66	2.04	0.75	0.75	—	69945	6459	42	1615	694	0	0	logfile
✔	6GCS	4384	2023-02-22	2018-04-19	4.32	4.51	—	4.3	0.010	1.35	3.0	0.97	12.02	0.01	2.231	8.78	0.73	13.4	85.9	0.8	-4.79	0.77	0.78	—	4.3	0.009	1.69	0.0	0.30	12.66	0.00	2.049	20.00	0.00	13.2	86.5	0.3	-2.20	0.78	0.78	0.79	—	55137	6864	53	0	667	0	0	logfile
✘	6BBM	7076	2023-02-24	2017-10-18	4.1	4.24	—	4.1	0.008	1.20	0.0	0.06	16.70	0.01	2.231	9.86	0.58	13.8	86.1	0.2	-5.97	0.74	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23956	2662	15	0	623	0	0	logfile
✘	6L4U	0835	2023-02-23	2019-10-21	2.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62199	5075	72	0	557	156	0	logfile
✔	5oQJ	3846	2023-02-23	2017-08-11	4.7	4.68	—	4.2	0.007	0.54	0.0	0.04	12.44	0.00	1.336	7.82	0.30	6.5	92.3	1.2	-3.41	0.70	0.58	—	4.3	0.003	0.72	0.0	0.04	14.43	0.00	2.036	13.74	0.02	5.3	94.5	0.2	-0.30	1.79	0.84	0.81	—	62931	7649	43	148	557	0	0	logfile
✔	7ZTD	14958	2023-02-25	2022-05-09	4.6	4.11	4.55	4.3	0.007	1.04	0.0	0.06	15.69	0.01	2.097	8.15	0.00	5.4	94.6	0.0	-2.32	0.70	0.80	—	4.4	0.003	0.68	0.0	0.04	13.92	0.00	2.049	9.84	0.00	4.9	95.1	0.0	0.37	10.50	0.68	0.78	—	25740	2928	20	0	548	0	0	logfile
✔	7ZTC	14957	2023-02-25	2022-05-09	3.9	3.69	3.89	3.8	0.004	0.84	0.0	0.05	13.85	0.01	2.123	5.33	0.00	6.9	93.1	0.0	-2.20	0.71	0.82	3.21	3.7	0.003	0.69	0.0	0.04	15.14	0.00	2.177	7.01	0.20	4.1	95.9	0.0	-0.59	2.51	0.72	0.84	2.24	25652	2920	20	0	548	0	0	logfile
✘	6BWD	7297	2023-02-24	2017-12-14	3.7	3.83	—	3.8	0.011	1.65	8.0	0.09	13.73	0.01	1.254	13.17	0.57	12.5	86.3	1.2	-5.69	0.64	0.76	1.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23187	2600	12	0	509	30	0	logfile
✘	6BWF	7298	2023-02-24	2017-12-14	4.1	4.19	—	4.2	0.008	1.49	2.0	0.07	12.82	0.01	2.204	12.32	0.59	12.1	86.6	1.3	-5.34	0.62	0.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22174	2584	4	0	480	0	0	logfile
✘	7DZ7	30925	2023-02-27	2021-01-23	2.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	69647	5998	55	0	471	0	0	logfile
✘	7DZ8	30926	2023-02-27	2021-01-23	3.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	69460	5986	55	0	471	0	0	logfile
✔	4UiS	2974	2023-02-20	2015-04-03	4.4	4.48	—	4.4	0.009	1.29	0.0	0.06	9.92	0.01	1.546	24.94	1.19	7.7	87.4	5.0	-2.00	0.50	0.56	—	4.4	0.004	0.84	0.0	0.04	12.22	0.00	2.111	17.83	0.00	10.2	88.5	1.3	-1.76	1.66	0.55	0.74	—	8518	791	5	0	458	0	0	logfile
✘	7F4V	31455	2023-02-26	2021-06-21	2.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	67641	6336	78	0	453	402	0	logfile

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