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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7Z37 | 14472 | 2024-03-16 | 2022-03-01 | 3.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 8B3o | 15831 | 2024-03-18 | 2022-09-16 | 2.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 8AN3 | 15531 | 2024-03-11 | 2022-08-04 | 3.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 8HKX | 34862 | 2024-03-11 | 2022-11-28 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 7ZRZ | 14923 | 2024-03-11 | 2022-05-05 | 3.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 8HL3 | 34868 | 2024-03-10 | 2022-11-28 | 4.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 6XZG | 10662 | 2024-03-13 | 2020-02-04 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 6XZP | 10664 | 2024-03-13 | 2020-02-05 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 6TU7 | 10590 | 2024-03-19 | 2020-01-03 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✔ | 5VLZ | 8709 | 2024-03-20 | 2017-04-26 | 4.4 | 4.55 | — | 4.4 | 0.006 | 0.89 | 0.0 | 0.00 | 5.88 | 0.00 | 2.272 | 2.04 | 0.00 | 6.1 | 93.9 | 0.0 | -1.92 | 0.80 | 0.66 | — | 4.4 | 0.002 | 0.73 | 0.0 | 0.00 | 4.75 | 0.00 | 2.276 | 0.95 | 0.00 | 4.8 | 95.2 | 0.0 | -0.40 | 2.02 | 0.83 | 0.78 | — | 96897 | 24179 | 181 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RRS | 4989 | 2024-03-19 | 2019-05-20 | 3.9 | 4.30 | 4.41 | 3.8 | 0.013 | 2.10 | 0.0 | 0.00 | 2.04 | 0.01 | 2.364 | 0.79 | 0.00 | 3.9 | 95.3 | 0.8 | -0.85 | 0.56 | 0.64 | — | 3.8 | 0.004 | 0.84 | 0.0 | 0.00 | 7.15 | 0.00 | 2.195 | 1.79 | 0.00 | 15.0 | 85.0 | 0.0 | -1.14 | 2.03 | 0.80 | 0.71 | — | 93060 | 23220 | 180 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Z4F | 14495 | 2024-03-02 | 2022-03-03 | 4.2 | 4.06 | 5.31 | 3.9 | 0.006 | 0.83 | 24.0 | 0.05 | 14.46 | 0.01 | 0.140 | 45.30 | 0.97 | 8.4 | 90.6 | 0.9 | -2.35 | 0.75 | 0.63 | — | 3.9 | 0.014 | 0.90 | 2.0 | 0.05 | 14.35 | 0.01 | 2.023 | 30.18 | 0.00 | 13.1 | 86.3 | 0.6 | -2.61 | 1.00 | 0.77 | 0.72 | — | 154392 | 21600 | 66 | 0 | 0 | 0 | 0 | logfile |
✔ | 8B11 | 15799 | 2024-03-03 | 2022-09-08 | 2.52 | 2.32 | 2.54 | 2.3 | 0.005 | 0.71 | 0.0 | 0.05 | 17.25 | 0.00 | 0.439 | 16.54 | 1.18 | 1.4 | 98.6 | 0.0 | -0.06 | 0.68 | 0.88 | 4.07 | 2.3 | 0.004 | 0.64 | 0.0 | 0.04 | 18.08 | 0.00 | 2.107 | 9.34 | 4.63 | 1.0 | 99.0 | 0.0 | 0.16 | 2.80 | 0.67 | 0.88 | 4.42 | 157440 | 21600 | 480 | 0 | 0 | 2700 | 0 | logfile |
✔ | 7CKC | 30385 | 2024-03-27 | 2020-07-16 | 2.9 | 2.95 | — | 2.9 | 0.007 | 0.92 | 0.0 | 0.05 | 16.47 | 0.01 | 2.090 | 5.46 | 0.00 | 2.2 | 97.8 | 0.0 | -0.01 | 0.81 | 0.87 | 3.65 | 2.9 | 0.006 | 0.75 | 0.0 | 0.05 | 17.84 | 0.00 | 2.077 | 5.64 | 4.35 | 2.1 | 97.9 | 0.0 | 0.35 | 1.54 | 0.81 | 0.88 | 3.59 | 150300 | 20820 | 240 | 0 | 0 | 0 | 0 | logfile |
✔ | 7o3Y | 12712 | 2024-03-03 | 2021-04-03 | 3.8 | 5.36 | 4.02 | 6.6 | 0.017 | 1.23 | 0.0 | 0.07 | 17.47 | 0.01 | 1.232 | 13.83 | 1.39 | 2.3 | 97.7 | 0.0 | 2.03 | 0.56 | 0.43 | -1.05 | 6.8 | 0.005 | 1.22 | 0.0 | 0.05 | 19.41 | 0.01 | 2.016 | 33.38 | 2.63 | 1.6 | 98.4 | 0.0 | 1.62 | 2.04 | 0.77 | 0.83 | -0.20 | 158288 | 20576 | 112 | 0 | 16 | 0 | 0 | logfile |
✔ | 6Z5L | 11079 | 2024-03-03 | 2020-05-26 | 3.8 | 4.08 | — | 3.9 | 0.004 | 0.63 | 0.0 | 0.03 | 15.41 | 0.00 | 1.986 | 3.72 | 0.00 | 5.2 | 94.8 | 0.0 | 1.60 | 0.53 | 0.68 | 0.31 | 3.9 | 0.003 | 0.68 | 0.0 | 0.04 | 17.50 | 0.00 | 2.118 | 14.24 | 1.95 | 4.3 | 95.7 | 0.0 | 2.37 | 1.28 | 0.58 | 0.86 | 0.94 | 154880 | 20080 | 80 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WH3 | 21667 | 2024-03-04 | 2020-04-07 | 2.96 | 3.01 | — | 3.0 | 0.011 | 1.09 | 60.0 | 0.08 | 9.53 | 0.01 | 2.204 | 31.34 | 0.68 | 3.9 | 96.1 | 0.0 | -1.75 | 0.74 | 0.87 | 5.56 | 3.0 | 0.005 | 0.67 | 0.0 | 0.05 | 15.98 | 0.00 | 2.080 | 15.46 | 4.61 | 6.0 | 94.0 | 0.0 | -1.26 | 0.60 | 0.71 | 0.89 | 4.69 | 157740 | 20040 | 120 | 0 | 60 | 0 | 0 | logfile |
✘ | 5GJR | 9512 | 2024-03-20 | 2016-07-01 | 3.5 | 3.65 | — | 3.5 | 0.013 | 1.53 | 38.0 | 0.08 | 16.77 | 0.01 | 1.114 | 63.72 | 11.56 | 13.2 | 81.8 | 5.0 | -4.66 | 0.71 | 0.77 | 1.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 142753 | 19945 | 76 | 0 | 12 | 0 | 0 | logfile |
✔ | 6SSK | 10296 | 2024-03-03 | 2019-09-08 | 3.18 | 3.64 | — | 3.6 | 0.008 | 0.88 | 10.0 | 0.06 | 14.40 | 0.01 | 1.561 | 4.60 | 0.18 | 3.5 | 96.2 | 0.3 | -4.85 | 0.57 | 0.57 | 0.07 | 3.6 | 0.003 | 0.69 | 0.0 | 0.04 | 16.99 | 0.00 | 2.108 | 8.95 | 2.02 | 2.6 | 97.4 | 0.0 | -0.22 | 1.39 | 0.74 | 0.86 | 1.58 | 155900 | 19870 | 90 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YFE | 33787 | 2024-03-03 | 2022-07-08 | 3.4 | 3.99 | 3.52 | 3.9 | 0.003 | 0.66 | 1.0 | 0.05 | 13.64 | 0.00 | 2.039 | 7.79 | 0.95 | 3.9 | 96.1 | 0.0 | -0.18 | 0.39 | 0.80 | 1.74 | 3.9 | 0.003 | 0.70 | 0.0 | 0.04 | 16.42 | 0.00 | 2.054 | 11.14 | 4.11 | 4.5 | 95.5 | 0.0 | -0.14 | 2.08 | 0.35 | 0.84 | 1.84 | 156282 | 19807 | 32 | 17 | 7 | 0 | 0 | logfile |