Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SCA	25031	2023-02-22	2021-09-27	2.1	2.23	2.15	2.2	0.011	1.14	7.0	0.07	15.33	0.01	2.057	5.44	0.78	1.0	99.0	0.0	2.17	0.79	0.85	5.74	2.2	0.002	0.55	0.0	0.04	16.60	0.00	2.121	8.27	0.87	0.9	99.1	0.0	2.87	1.09	0.79	0.85	5.28	55437	6836	116	0	54	1325	0	logfile
✔	7N8o	24239	2023-02-22	2021-06-15	1.93	1.73	—	1.9	0.024	2.36	0.0	0.10	20.29	0.01	1.522	14.75	1.91	3.0	96.9	0.1	0.75	0.73	0.75	5.48	1.8	0.005	0.83	0.0	0.05	18.83	0.01	2.005	12.99	1.51	3.0	97.0	0.0	0.85	0.34	0.75	0.77	5.43	54656	5544	113	0	228	1236	0	logfile
✔	7RCV	24407	2023-02-22	2021-07-08	2.01	1.78	—	1.9	0.024	2.35	0.0	0.10	20.33	0.01	1.915	13.92	1.99	2.6	97.4	0.0	0.92	0.78	0.79	5.10	1.9	0.004	0.81	0.0	0.05	18.81	0.01	2.061	12.36	1.93	2.6	97.4	0.0	0.83	0.91	0.81	0.84	5.21	54656	5544	114	0	228	1236	0	logfile
✔	7P8W	13256	2023-02-22	2021-07-23	2.2	2.34	—	2.3	0.014	1.79	4.0	0.09	14.82	0.01	2.340	1.55	0.75	3.8	96.0	0.2	-1.36	0.85	0.92	6.91	2.3	0.003	0.64	0.0	0.04	15.80	0.00	2.207	3.10	0.52	3.0	97.0	0.0	0.52	1.15	0.85	0.91	6.20	17668	2008	12	0	8	1110	0	logfile
✔	5K12	8194	2023-02-21	2016-05-17	1.8	2.40	—	2.8	0.008	0.97	0.0	0.06	10.27	0.01	2.051	19.79	0.82	3.8	96.2	0.0	-2.53	0.66	0.74	5.80	2.8	0.003	0.56	0.0	0.04	15.71	0.01	2.213	9.95	0.27	1.9	98.1	0.0	2.18	0.90	0.71	0.89	3.52	14856	1764	12	0	0	1086	0	logfile
✘	7A5V	11657	2023-02-23	2020-08-22	1.7	1.73	1.69	1.8	0.014	1.59	0.0	0.09	13.54	0.02	0.000	2.35	0.48	2.2	97.8	0.0	-0.05	0.61	0.79	6.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21155	2275	30	0	85	1015	0	logfile
✔	6ZGL	11210	2023-02-21	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	9.00	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.003	0.52	0.0	0.04	15.83	0.00	2.114	4.28	0.93	0.9	99.1	0.0	3.77	0.76	0.75	0.83	7.09	15760	1848	24	0	0	964	0	logfile
✔	7XMU	33305	2023-02-21	2022-04-26	2.3	2.51	2.33	2.5	0.016	0.90	0.0	0.05	17.56	0.04	1.897	4.23	1.57	2.6	97.4	0.0	-0.10	0.75	0.87	4.86	2.5	0.003	1.81	0.0	0.04	17.21	0.00	1.872	4.69	0.46	2.6	97.4	0.0	0.29	1.11	0.77	0.88	4.57	15294	1842	18	0	36	822	0	logfile
✔	7XMV	33306	2023-02-21	2022-04-27	2.6	2.75	2.70	2.8	0.014	0.89	0.0	0.05	15.79	0.03	1.853	5.35	1.18	3.6	96.4	0.0	-0.87	0.72	0.86	4.88	2.8	0.004	1.24	0.0	0.05	17.46	0.00	1.861	4.67	0.85	3.3	96.7	0.0	-0.01	1.13	0.74	0.87	4.48	15228	1842	18	0	30	810	0	logfile
✘	7VB7	31874	2023-02-27	2021-08-30	2.4	2.41	—	2.4	0.007	0.77	1.0	0.05	16.42	0.01	1.988	6.35	1.28	3.0	96.9	0.1	0.48	0.76	0.90	5.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29279	3543	45	0	19	736	0	logfile
✔	7VYN	32210	2023-02-27	2021-11-14	2.4	2.47	—	2.5	0.008	0.78	1.0	0.05	16.97	0.01	2.198	5.50	1.15	3.5	96.5	0.1	0.41	0.77	0.91	5.04	2.4	0.003	0.57	0.0	0.04	17.05	0.00	2.157	4.55	1.68	3.5	96.5	0.1	0.59	0.60	0.76	0.92	5.01	29298	3543	45	0	20	735	0	logfile
✔	7VBZ	31886	2023-02-27	2021-09-01	2.4	2.48	—	2.5	0.009	0.93	6.0	0.06	16.44	0.01	1.907	11.30	2.07	3.7	96.0	0.3	-0.05	0.74	0.89	4.87	2.5	0.003	0.56	0.0	0.04	17.07	0.00	2.104	5.66	1.64	3.0	96.9	0.1	0.42	0.90	0.75	0.91	5.12	29292	3543	45	0	19	730	0	logfile
✔	7VBN	31883	2023-02-26	2021-08-31	2.4	2.48	—	2.5	0.006	0.75	2.0	0.05	16.47	0.01	2.002	8.61	1.39	3.1	96.8	0.1	0.39	0.78	0.89	4.54	2.5	0.003	0.58	0.0	0.04	16.95	0.00	2.109	5.90	2.12	3.2	96.7	0.1	0.33	0.81	0.78	0.91	4.61	29042	3522	44	0	17	713	0	logfile
✔	7VZ1	32218	2023-02-26	2021-11-15	2.5	2.55	—	2.5	0.008	0.78	0.0	0.05	17.15	0.01	2.201	6.34	1.17	3.3	96.6	0.1	0.11	0.79	0.91	4.60	2.5	0.003	0.54	0.0	0.04	17.22	0.00	2.155	5.08	1.84	3.4	96.6	0.0	0.37	0.25	0.78	0.92	4.45	28737	3488	44	0	17	712	0	logfile
✔	7VWJ	32154	2023-02-26	2021-11-10	2.6	2.67	—	2.7	0.007	0.72	0.0	0.04	14.07	0.01	1.965	7.48	0.13	2.9	97.0	0.0	0.65	0.77	0.89	4.69	2.6	0.003	0.54	0.0	0.04	16.51	0.00	2.128	6.78	1.47	3.3	96.7	0.0	0.39	0.32	0.77	0.91	4.33	28748	3488	44	0	17	711	0	logfile
✘	6KMX	0727	2023-02-24	2019-08-01	2.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65112	5919	72	0	363	636	0	logfile
✘	6KMW	0726	2023-02-24	2019-08-01	2.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64083	5739	63	0	366	627	0	logfile
✔	8D1G	27129	2023-02-22	2022-05-27	2.07	2.29	2.10	2.3	0.006	0.69	0.0	0.04	19.81	0.00	2.207	13.54	0.66	1.2	98.8	0.0	1.81	0.74	0.85	5.81	2.3	0.006	0.68	0.0	0.05	17.43	0.01	2.142	7.69	0.52	1.3	98.7	0.0	1.57	0.91	0.71	0.86	5.67	16201	1735	15	0	61	620	0	logfile
✔	7UUR	26801	2023-02-21	2022-04-28	1.67	1.76	1.67	1.8	0.061	2.45	4.0	0.98	14.57	0.01	1.674	7.19	0.44	2.5	97.2	0.2	-0.89	0.76	0.87	7.87	1.8	0.007	2.49	2.0	0.07	14.70	0.01	1.611	10.87	0.29	2.1	97.9	0.0	0.19	0.27	0.77	0.88	7.79	13683	1668	12	0	18	603	0	logfile
✔	7SS5	25404	2023-02-18	2021-11-09	2.7	3.48	2.63	3.2	0.003	0.63	2.0	0.05	19.80	0.00	2.179	8.80	0.00	3.1	96.9	0.0	0.76	0.51	0.75	3.88	3.2	0.003	0.62	0.0	0.04	21.87	0.00	2.094	8.31	1.77	3.1	96.9	0.0	1.83	3.20	0.51	0.88	3.09	6927	676	10	48	6	593	0	logfile

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