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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6SAG | 10130 | 2023-12-07 | 2019-07-16 | 2.0 | 2.11 | 2.01 | 2.1 | 0.004 | 0.65 | 0.0 | 0.04 | 13.90 | 0.00 | 0.351 | 2.79 | 0.00 | 2.6 | 97.4 | 0.0 | -0.33 | 0.58 | 0.86 | 6.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 54080 | 6120 | 240 | 120 | 240 | 2840 | 0 | logfile |
✔ | 8BL2 | 16100 | 2023-12-08 | 2022-11-09 | 2.3 | 2.29 | 2.26 | 2.2 | 0.005 | 0.59 | 0.0 | 0.04 | 16.84 | 0.00 | 1.872 | 11.53 | 1.01 | 1.2 | 98.8 | 0.0 | 0.70 | 0.76 | 0.75 | 3.19 | 2.2 | 0.004 | 0.58 | 0.0 | 0.04 | 16.49 | 0.00 | 1.965 | 13.27 | 1.42 | 1.4 | 98.6 | 0.0 | 1.15 | 1.04 | 0.83 | 0.86 | 4.05 | 57128 | 7336 | 42 | 0 | 42 | 2780 | 0 | logfile |
✔ | 7SC8 | 25029 | 2023-12-08 | 2021-09-27 | 2.1 | 2.19 | 2.13 | 1.9 | 0.008 | 1.12 | 10.0 | 0.07 | 14.65 | 0.01 | 2.102 | 5.20 | 0.38 | 1.0 | 99.0 | 0.0 | 2.13 | 0.82 | 0.79 | 4.35 | 1.9 | 0.004 | 0.57 | 0.0 | 0.04 | 15.96 | 0.00 | 2.108 | 8.64 | 0.91 | 1.1 | 98.9 | 0.0 | 2.91 | 0.36 | 0.86 | 0.87 | 4.16 | 56784 | 6836 | 116 | 0 | 54 | 2672 | 0 | logfile |
✘ | 7D1T | 30547 | 2023-12-07 | 2020-09-15 | 1.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 52994 | 5312 | 108 | 0 | 196 | 2432 | 0 | logfile |
✔ | 6M3X | 30073 | 2023-12-09 | 2020-03-04 | 2.24 | 2.31 | — | 2.3 | 0.006 | 0.81 | 0.0 | 0.05 | 13.95 | 0.01 | 2.222 | 3.45 | 0.37 | 3.2 | 96.8 | 0.0 | -2.65 | 0.78 | 0.90 | 7.35 | 2.3 | 0.003 | 0.61 | 0.0 | 0.05 | 16.91 | 0.00 | 2.259 | 5.96 | 0.73 | 2.9 | 97.1 | 0.0 | 0.36 | 0.42 | 0.78 | 0.91 | 6.73 | 62387 | 7440 | 72 | 0 | 24 | 2243 | 0 | logfile |
✔ | 7ZHG | 14731 | 2023-12-09 | 2022-04-06 | 2.25 | 2.12 | 2.20 | 2.2 | 0.016 | 0.85 | 3.0 | 0.04 | 21.00 | 0.06 | 1.889 | 2.84 | 1.41 | 3.3 | 96.7 | 0.0 | 0.18 | 0.70 | 0.86 | 5.31 | 2.2 | 0.004 | 1.23 | 0.0 | 0.04 | 22.03 | 0.01 | 1.869 | 3.87 | 0.95 | 3.2 | 96.8 | 0.0 | 0.45 | 0.38 | 0.72 | 0.89 | 5.00 | 64278 | 3601 | 69 | 1533 | 96 | 2083 | 0 | logfile |
✔ | 8BM1 | 16117 | 2023-12-09 | 2022-11-10 | 2.7 | 2.71 | 2.68 | 2.6 | 0.004 | 0.73 | 0.0 | 0.05 | 15.95 | 0.00 | 1.948 | 13.36 | 0.81 | 1.8 | 98.1 | 0.1 | 1.10 | 0.82 | 0.83 | 2.93 | 2.6 | 0.004 | 0.60 | 0.0 | 0.04 | 16.54 | 0.00 | 2.106 | 11.13 | 0.91 | 1.1 | 98.9 | 0.0 | 1.19 | 0.39 | 0.84 | 0.88 | 2.95 | 61416 | 8008 | 56 | 0 | 42 | 2056 | 0 | logfile |
✔ | 7R4F | 14302 | 2023-12-09 | 2022-02-08 | 2.4 | 2.39 | — | 2.3 | 0.007 | 0.79 | 0.0 | 0.87 | 18.77 | 0.01 | 1.904 | 2.94 | 1.29 | 2.5 | 97.5 | 0.0 | 0.66 | 0.73 | 0.90 | 5.70 | 2.4 | 0.007 | 1.32 | 0.0 | 0.26 | 17.14 | 0.00 | 2.086 | 4.44 | 1.32 | 1.7 | 98.3 | 0.0 | 1.76 | 0.28 | 0.73 | 0.91 | 4.99 | 65494 | 7788 | 114 | 0 | 44 | 1415 | 0 | logfile |
✔ | 8BMT | 16125 | 2023-12-10 | 2022-11-10 | 2.5 | 2.69 | 2.49 | 2.5 | 0.003 | 0.62 | 0.0 | 0.05 | 15.40 | 0.00 | 1.922 | 10.73 | 1.12 | 1.8 | 98.2 | 0.0 | 1.86 | 0.83 | 0.85 | 3.16 | 2.6 | 0.004 | 0.73 | 0.0 | 0.05 | 16.18 | 0.00 | 1.963 | 13.58 | 1.28 | 1.7 | 98.3 | 0.0 | 1.01 | 1.51 | 0.84 | 0.88 | 2.99 | 65711 | 8680 | 56 | 0 | 42 | 1339 | 0 | logfile |
✔ | 7SCA | 25031 | 2023-12-08 | 2021-09-27 | 2.1 | 2.23 | 2.15 | 2.2 | 0.011 | 1.14 | 7.0 | 0.07 | 14.95 | 0.01 | 2.057 | 5.44 | 0.78 | 1.0 | 99.0 | 0.0 | 2.17 | 0.79 | 0.85 | 5.74 | 2.2 | 0.002 | 0.55 | 0.0 | 0.04 | 16.12 | 0.00 | 2.120 | 8.47 | 0.83 | 0.9 | 99.1 | 0.0 | 2.86 | 1.09 | 0.79 | 0.85 | 5.30 | 55437 | 6836 | 116 | 0 | 54 | 1325 | 0 | logfile |
✔ | 8BLC | 16106 | 2023-12-08 | 2022-11-09 | 2.7 | 2.79 | 2.65 | 2.7 | 0.005 | 0.51 | 0.0 | 0.04 | 17.03 | 0.00 | 2.062 | 11.39 | 1.44 | 0.9 | 99.1 | 0.0 | 1.13 | 0.81 | 0.83 | 2.54 | 2.7 | 0.002 | 0.47 | 0.0 | 0.04 | 16.78 | 0.00 | 2.059 | 11.07 | 1.29 | 0.8 | 99.2 | 0.0 | 1.34 | 0.23 | 0.83 | 0.87 | 2.41 | 55646 | 7336 | 42 | 0 | 42 | 1298 | 0 | logfile |
✔ | 8P5V | 17454 | 2023-12-08 | 2023-05-24 | 2.07 | 2.90 | 2.14 | 2.5 | 0.009 | 1.09 | 0.0 | 0.06 | 14.45 | 0.02 | 2.018 | 1.82 | 0.53 | 2.7 | 97.3 | 0.0 | 0.06 | 0.90 | 0.95 | 6.07 | 2.6 | 0.004 | 0.66 | 0.0 | 0.04 | 15.02 | 0.00 | 1.915 | 3.16 | 0.58 | 2.1 | 97.9 | 0.0 | 1.35 | 1.70 | 0.86 | 0.93 | 5.55 | 54248 | 6726 | 18 | 0 | 24 | 1280 | 0 | logfile |
✔ | 7N8o | 24239 | 2023-12-08 | 2021-06-15 | 1.93 | 1.73 | — | 1.9 | 0.025 | 2.40 | 0.0 | 0.11 | 22.23 | 0.01 | 1.522 | 14.77 | 1.91 | 3.0 | 96.9 | 0.1 | 0.75 | 0.73 | 0.75 | 5.48 | 1.8 | 0.004 | 0.78 | 0.0 | 0.05 | 17.97 | 0.01 | 2.008 | 12.36 | 1.68 | 2.7 | 97.3 | 0.0 | 0.99 | 0.36 | 0.75 | 0.77 | 5.38 | 54656 | 5544 | 113 | 0 | 228 | 1236 | 0 | logfile |
✔ | 7RCV | 24407 | 2023-12-08 | 2021-07-08 | 2.01 | 1.78 | — | 1.9 | 0.024 | 2.38 | 0.0 | 0.11 | 22.23 | 0.01 | 1.915 | 13.94 | 1.99 | 2.6 | 97.4 | 0.0 | 0.92 | 0.78 | 0.79 | 5.10 | 1.9 | 0.007 | 0.97 | 0.0 | 0.05 | 18.79 | 0.01 | 1.965 | 13.00 | 2.02 | 3.0 | 97.0 | 0.0 | 0.32 | 0.91 | 0.81 | 0.84 | 5.29 | 54656 | 5544 | 114 | 0 | 228 | 1236 | 0 | logfile |
✔ | 8BMD | 16118 | 2023-12-08 | 2022-11-10 | 2.8 | 2.93 | 2.78 | 2.8 | 0.004 | 0.60 | 0.0 | 0.04 | 16.85 | 0.00 | 2.030 | 9.24 | 1.77 | 1.8 | 98.2 | 0.0 | 0.48 | 0.83 | 0.86 | 2.79 | 2.8 | 0.002 | 0.50 | 0.0 | 0.04 | 16.55 | 0.00 | 2.003 | 10.70 | 2.43 | 1.1 | 98.9 | 0.0 | 1.30 | 0.23 | 0.83 | 0.87 | 2.63 | 55532 | 7336 | 42 | 0 | 42 | 1184 | 0 | logfile |
✔ | 6ZGL | 11210 | 2023-12-10 | 2020-06-19 | 1.9 | 1.87 | — | 1.9 | 0.013 | 1.55 | 0.0 | 0.12 | 15.52 | 0.01 | 2.196 | 9.00 | 3.73 | 1.1 | 98.9 | 0.0 | 0.13 | 0.73 | 0.83 | 7.03 | 1.9 | 0.003 | 0.52 | 0.0 | 0.04 | 15.83 | 0.00 | 2.114 | 4.28 | 0.93 | 0.9 | 99.1 | 0.0 | 3.77 | 0.76 | 0.75 | 0.83 | 7.09 | 15760 | 1848 | 24 | 0 | 0 | 964 | 0 | logfile |
✔ | 7R4G | 14307 | 2023-12-09 | 2022-02-08 | 2.5 | 2.48 | — | 2.5 | 0.008 | 0.81 | 0.0 | 0.86 | 16.79 | 0.01 | 1.869 | 4.23 | 0.03 | 3.2 | 96.8 | 0.0 | -0.01 | 0.70 | 0.89 | 5.55 | 2.5 | 0.007 | 1.33 | 0.0 | 0.26 | 16.69 | 0.00 | 2.155 | 5.04 | 0.79 | 2.0 | 97.9 | 0.0 | 1.35 | 0.79 | 0.70 | 0.90 | 4.67 | 65153 | 7802 | 111 | 0 | 47 | 851 | 0 | logfile |
✔ | 7XMU | 33305 | 2023-12-10 | 2022-04-26 | 2.3 | 2.51 | 2.33 | 2.5 | 0.016 | 0.90 | 0.0 | 0.05 | 17.56 | 0.04 | 1.897 | 4.23 | 1.57 | 2.6 | 97.4 | 0.0 | -0.10 | 0.75 | 0.87 | 4.86 | 2.5 | 0.003 | 1.81 | 0.0 | 0.04 | 17.21 | 0.00 | 1.872 | 4.69 | 0.46 | 2.6 | 97.4 | 0.0 | 0.29 | 1.11 | 0.77 | 0.88 | 4.57 | 15294 | 1842 | 18 | 0 | 36 | 822 | 0 | logfile |
✔ | 7XMV | 33306 | 2023-12-10 | 2022-04-27 | 2.6 | 2.75 | 2.70 | 2.8 | 0.015 | 0.96 | 0.0 | 0.05 | 15.36 | 0.04 | 1.853 | 5.34 | 1.18 | 3.6 | 96.4 | 0.0 | -0.87 | 0.72 | 0.86 | 4.88 | 2.8 | 0.002 | 1.31 | 0.0 | 0.04 | 17.04 | 0.01 | 1.904 | 4.31 | 0.59 | 3.0 | 97.0 | 0.0 | 0.19 | 1.12 | 0.73 | 0.87 | 4.35 | 15228 | 1842 | 18 | 0 | 30 | 810 | 0 | logfile |
✔ | 8CAD | 16524 | 2023-12-09 | 2023-01-24 | 2.85 | 2.57 | 2.81 | 2.7 | 0.003 | 0.59 | 0.0 | 0.05 | 10.12 | 0.00 | 2.115 | 5.66 | 0.00 | 1.8 | 98.2 | 0.0 | 0.82 | 0.69 | 0.81 | 3.81 | 2.6 | 0.004 | 0.59 | 0.0 | 0.04 | 14.55 | 0.00 | 1.902 | 4.95 | 1.25 | 3.4 | 96.6 | 0.0 | 0.48 | 0.63 | 0.71 | 0.86 | 4.08 | 64084 | 3816 | 30 | 0 | 78 | 766 | 31062 | logfile |