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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5XJC | 6721 | 2023-12-09 | 2017-04-30 | 3.6 | 3.69 | 3.82 | 3.6 | 0.013 | 1.58 | 25.0 | 0.10 | 17.69 | 0.01 | 1.113 | 24.22 | 8.13 | 4.9 | 93.3 | 1.8 | -1.84 | 0.46 | 0.53 | 1.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 116421 | 14184 | 59 | 405 | 24 | 0 | 0 | logfile |
✘ | 5ZWM | 6972 | 2023-12-08 | 2018-05-16 | 3.4 | 3.37 | — | 3.3 | 0.007 | 1.15 | 10.0 | 0.06 | 14.46 | 0.01 | 1.786 | 18.95 | 0.72 | 5.9 | 93.5 | 0.6 | -3.22 | 0.51 | 0.43 | 1.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111041 | 12858 | 61 | 634 | 8 | 0 | 0 | logfile |
✘ | 6PUY | 20484 | 2023-12-09 | 2019-07-18 | 2.8 | 3.15 | 2.88 | 3.1 | 0.015 | 0.90 | 0.0 | 0.06 | 19.87 | 0.01 | 0.000 | 4.36 | 0.19 | 3.0 | 97.0 | 0.0 | -3.07 | 0.75 | 0.90 | 4.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11784 | 1232 | 28 | 72 | 10 | 404 | 0 | logfile |
✘ | 6JGZ | 9824 | 2023-12-08 | 2019-02-16 | 4.6 | 4.96 | — | 4.6 | 0.007 | 1.13 | 0.0 | 0.06 | 11.54 | 0.01 | 2.171 | 11.98 | 0.73 | 11.3 | 88.3 | 0.4 | -4.06 | 0.78 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109824 | 14368 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 6JRS | 9880 | 2023-12-08 | 2019-04-05 | 3.7 | 3.86 | — | 3.7 | 0.010 | 1.08 | 0.0 | 0.06 | 16.41 | 0.01 | 2.225 | 8.77 | 0.90 | 12.4 | 87.2 | 0.3 | -5.87 | 0.74 | 0.80 | 1.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112168 | 14652 | 20 | 0 | 24 | 0 | 0 | logfile |
✘ | 8D8R | 27255 | 2023-12-07 | 2022-06-08 | 4.1 | 4.18 | 1.95 | 4.1 | 0.011 | 1.25 | 0.0 | 0.06 | 10.92 | 0.01 | 2.512 | 1.08 | 0.00 | 2.1 | 97.9 | 0.0 | 1.96 | 0.59 | 0.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3323 | 425 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 7ZEC | 14689 | 2023-12-08 | 2022-03-30 | 3.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8987 | 1148 | 2 | 0 | 3 | 0 | 0 | logfile |
✘ | 6JRR | 9879 | 2023-12-08 | 2019-04-05 | 3.9 | 4.09 | — | 3.9 | 0.010 | 1.14 | 4.0 | 0.06 | 15.94 | 0.01 | 1.827 | 8.44 | 0.80 | 10.2 | 89.5 | 0.2 | -5.20 | 0.76 | 0.81 | 1.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109132 | 14268 | 12 | 0 | 16 | 0 | 0 | logfile |
✘ | 7Li9 | 23364 | 2023-12-08 | 2021-01-26 | 3.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6174 | 767 | 5 | 0 | 13 | 0 | 0 | logfile |
✘ | 8DH6 | 27430 | 2023-12-10 | 2022-06-25 | 2.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12901 | 1560 | 16 | 0 | 17 | 0 | 0 | logfile |
✘ | 6Ji8 | 9833 | 2023-12-09 | 2019-02-20 | 3.6 | 3.80 | — | 3.7 | 0.010 | 1.26 | 8.0 | 0.06 | 11.98 | 0.01 | 2.196 | 8.60 | 1.03 | 10.5 | 89.0 | 0.5 | -4.77 | 0.73 | 0.77 | 2.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115060 | 15024 | 16 | 0 | 4 | 0 | 0 | logfile |
✘ | 7X7T | 33047 | 2023-12-08 | 2022-03-10 | 3.48 | 3.70 | — | 3.7 | 0.007 | 1.04 | 3.0 | 0.06 | 13.41 | 0.01 | 2.174 | 8.12 | 0.14 | 6.0 | 93.9 | 0.1 | -4.53 | 0.44 | 0.61 | 3.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6815 | 871 | 8 | 0 | 1 | 0 | 0 | logfile |
✘ | 6JHN | 9826 | 2023-12-08 | 2019-02-18 | 4.5 | 7.49 | — | 4.4 | 0.010 | 1.23 | 0.0 | 0.06 | 16.52 | 0.01 | 2.114 | 19.26 | 1.44 | 13.9 | 85.8 | 0.3 | -4.27 | 0.85 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109488 | 14332 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 6JV2 | 9889 | 2023-12-08 | 2019-04-15 | 4.4 | 5.59 | — | 4.4 | 0.011 | 1.30 | 1.0 | 0.06 | 16.74 | 0.01 | 2.116 | 19.38 | 1.92 | 13.3 | 86.5 | 0.3 | -4.61 | 0.83 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111080 | 14564 | 16 | 0 | 24 | 0 | 0 | logfile |
✘ | 6JiU | 9836 | 2023-12-08 | 2019-02-23 | 4.2 | 4.52 | — | 4.2 | 0.006 | 1.01 | 9.0 | 0.05 | 15.69 | 0.01 | 2.218 | 10.69 | 0.51 | 10.3 | 89.5 | 0.2 | -5.44 | 0.78 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112212 | 14684 | 20 | 0 | 24 | 0 | 0 | logfile |
✘ | 7L20 | 23121 | 2023-12-08 | 2020-12-15 | 3.15 | 3.39 | — | 3.4 | 0.007 | 0.87 | 0.0 | 0.05 | 19.41 | 0.01 | 0.505 | 10.97 | 0.84 | 7.3 | 92.2 | 0.5 | -3.38 | 0.69 | 0.79 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 110234 | 9454 | 67 | 1583 | 171 | 0 | 0 | logfile |
✘ | 6Jii | 9834 | 2023-12-09 | 2019-02-21 | 4.2 | 4.38 | — | 4.1 | 0.008 | 1.12 | 0.0 | 0.06 | 11.51 | 0.01 | 2.208 | 7.63 | 0.57 | 11.2 | 88.4 | 0.4 | -4.07 | 0.78 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115028 | 15012 | 16 | 0 | 16 | 0 | 0 | logfile |
✘ | 7WG5 | 32477 | 2023-12-08 | 2021-12-28 | 3.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112687 | 11759 | 92 | 0 | 545 | 0 | 0 | logfile |
✘ | 7PNK | 13548 | 2023-12-08 | 2021-09-07 | 3.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 60673 | 6142 | 74 | 0 | 250 | 0 | 0 | logfile |
✘ | 6ZZX | 11588 | 2023-12-08 | 2020-08-05 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56369 | 4684 | 68 | 0 | 403 | 99 | 0 | logfile |