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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3J4P | 5681 | 2022-05-05 | 2013-09-10 | 4.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 254580 | 31020 | 60 | 0 | 180 | 60 | 0 | logfile |
✘ | 5ZJi | 6932 | 2022-05-17 | 2018-03-20 | 3.3 | 3.39 | — | 3.4 | 0.012 | 1.45 | 0.0 | 0.11 | 16.67 | 0.01 | 1.204 | 8.01 | 0.45 | 6.4 | 93.6 | 0.0 | -3.56 | 0.68 | 0.84 | 3.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44708 | 4087 | 40 | 0 | 271 | 0 | 0 | logfile |
✘ | 6oiT | 20081 | 2022-05-13 | 2019-04-09 | 3.5 | 3.59 | — | 3.6 | 0.006 | 1.02 | 0.0 | 0.06 | 11.44 | 0.01 | 2.233 | 5.37 | 0.45 | 3.9 | 96.1 | 0.0 | -2.34 | 0.74 | 0.77 | 2.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12085 | 1536 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 6oPC | 20149 | 2022-05-16 | 2019-04-24 | 3.7 | 4.08 | — | 3.7 | 0.010 | 1.06 | 4.0 | 0.06 | 14.10 | 0.02 | 1.515 | 5.03 | 0.09 | 8.2 | 91.1 | 0.7 | -4.20 | 0.79 | 0.71 | 1.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30015 | 4455 | 13 | 0 | 48 | 0 | 0 | logfile |
✘ | 6iRS | 9721 | 2022-05-12 | 2018-11-14 | 3.3 | 3.44 | — | 3.4 | 0.011 | 1.35 | 0.0 | 0.07 | 12.97 | 0.01 | 2.150 | 13.18 | 3.66 | 8.8 | 90.3 | 0.9 | -5.69 | 0.62 | 0.77 | 2.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7337 | 926 | 4 | 0 | 10 | 0 | 0 | logfile |
✘ | 3J5R | 5777 | 2022-05-14 | 2013-10-28 | 4.2 | 4.88 | — | 7.2 | 0.011 | 1.57 | 0.0 | 0.09 | 20.25 | 0.01 | 1.204 | 84.60 | 28.64 | 7.8 | 91.0 | 1.2 | -0.91 | 0.58 | 0.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17564 | 2324 | 4 | 0 | 44 | 0 | 0 | logfile |
✘ | 5NJT | 3656 | 2022-05-16 | 2017-03-29 | 3.8 | 4.18 | 4.07 | 4.1 | 0.008 | 1.18 | 0.0 | 0.06 | 17.85 | 0.01 | 1.178 | 8.97 | 1.58 | 14.2 | 85.2 | 0.6 | -5.34 | 0.76 | 0.78 | 1.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 133097 | 5596 | 51 | 4579 | 0 | 0 | 0 | logfile |
✘ | 3J5Q | 5776 | 2022-05-14 | 2013-10-28 | 3.8 | 4.64 | — | 7.1 | 0.010 | 1.45 | 0.0 | 0.09 | 20.92 | 0.01 | 0.275 | 105.06 | 29.72 | 6.4 | 93.1 | 0.5 | -0.53 | 0.58 | 0.44 | -0.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18264 | 2324 | 8 | 0 | 168 | 0 | 0 | logfile |
✘ | 6R21 | 4706 | 2022-05-17 | 2019-03-15 | 3.33 | 2.60 | — | 3.3 | 0.016 | 1.51 | 48.0 | 0.10 | 12.19 | 0.01 | 1.283 | 16.65 | 1.64 | 11.9 | 88.0 | 0.0 | -4.23 | 0.81 | 0.80 | 2.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 101064 | 12786 | 30 | 0 | 0 | 0 | 0 | logfile |
✘ | 3JCA | 6441 | 2022-05-13 | 2015-11-24 | 4.8 | 4.59 | — | 4.5 | 0.012 | 1.49 | 0.0 | 0.07 | 18.62 | 0.01 | 2.370 | 3.54 | 0.00 | 7.2 | 92.8 | 0.0 | -1.87 | 0.75 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11466 | 1226 | 16 | 80 | 4 | 0 | 0 | logfile |
✘ | 6iRT | 9722 | 2022-05-12 | 2018-11-14 | 3.5 | 3.76 | — | 3.7 | 0.011 | 1.22 | 0.0 | 0.09 | 12.34 | 0.01 | 2.241 | 10.46 | 3.01 | 9.2 | 90.0 | 0.8 | -5.53 | 0.63 | 0.80 | 3.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7348 | 926 | 4 | 0 | 11 | 0 | 0 | logfile |
✘ | 6iH9 | 9671 | 2022-05-03 | 2018-09-29 | 2.8 | 2.91 | — | 3.5 | 0.008 | 0.93 | 0.0 | 0.05 | 10.02 | 0.01 | 1.244 | 43.79 | 0.65 | 4.2 | 95.6 | 0.2 | -2.32 | 0.34 | 0.23 | 0.07 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 248580 | 31020 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 4CE4 | 2490 | 2022-05-13 | 2013-11-08 | 4.9 | 5.03 | — | 5.0 | 0.004 | 0.79 | 0.0 | 0.04 | 14.48 | 0.00 | 1.398 | 13.86 | 2.64 | 5.3 | 94.5 | 0.2 | -2.30 | 0.47 | 0.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65473 | 3572 | 40 | 1437 | 984 | 0 | 0 | logfile |
✘ | 6DBU | 7850 | 2022-05-14 | 2018-05-03 | 3.9 | 4.03 | — | 3.9 | 0.007 | 1.20 | 8.0 | 0.05 | 21.90 | 0.01 | 1.769 | 23.51 | 0.13 | 8.8 | 90.9 | 0.2 | -4.17 | 0.80 | 0.81 | 1.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17010 | 1788 | 10 | 136 | 6 | 0 | 0 | logfile |
✘ | 6oo3 | 20143 | 2022-05-14 | 2019-04-22 | 2.9 | 3.02 | 2.79 | 3.0 | 0.014 | 1.22 | 0.0 | 0.06 | 9.99 | 0.01 | 2.495 | 2.38 | 0.00 | 3.1 | 96.9 | 0.0 | -2.84 | 0.68 | 0.85 | 4.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18236 | 2404 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 3J0G | 5275 | 2022-05-12 | 2011-07-21 | 4.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108000 | 14160 | 240 | 0 | 0 | 0 | 0 | logfile |
✘ | 6oo4 | 20145 | 2022-05-14 | 2019-04-22 | 3.3 | 3.45 | 3.23 | 3.5 | 0.013 | 1.10 | 0.0 | 0.06 | 9.30 | 0.01 | 1.858 | 3.19 | 0.00 | 3.4 | 96.6 | 0.0 | -2.86 | 0.47 | 0.64 | 4.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18452 | 2440 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 6CNA | 7529 | 2022-05-14 | 2018-03-07 | 4.6 | 5.89 | — | 5.8 | 0.006 | 0.91 | 0.0 | 0.05 | 10.19 | 0.01 | 2.021 | 26.64 | 0.00 | 9.7 | 90.1 | 0.3 | -4.80 | 0.57 | 0.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21426 | 3160 | 8 | 0 | 22 | 0 | 0 | logfile |
✘ | 6R8Y | 4762 | 2022-05-17 | 2019-04-02 | 4.3 | 4.52 | — | 4.4 | 0.015 | 1.07 | 2.0 | 0.08 | 22.89 | 0.01 | 2.015 | 3.55 | 0.47 | 5.7 | 94.0 | 0.3 | -1.60 | 0.78 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40962 | 1996 | 12 | 289 | 0 | 0 | 19245 | logfile |
✔ | 6V10 | 21004 | 2022-05-05 | 2019-11-19 | 3.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 250920 | 31260 | 120 | 120 | 0 | 0 | 0 | logfile |