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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7S0E | 24788 | 2022-07-03 | 2021-08-30 | 4.9 | 4.98 | — | 4.8 | 0.004 | 0.87 | 0.0 | 0.05 | 13.44 | 0.01 | 1.886 | 21.60 | 1.22 | 8.1 | 91.3 | 0.7 | -1.76 | 0.77 | 0.67 | — | 4.8 | 0.003 | 0.74 | 0.0 | 0.05 | 12.86 | 0.01 | 2.143 | 17.68 | 0.00 | 8.4 | 91.4 | 0.2 | -1.69 | 1.17 | 0.78 | 0.72 | — | 8248 | 1076 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MoA | 23922 | 2022-07-03 | 2021-05-01 | 4.9 | 4.75 | — | 4.0 | 0.011 | 1.36 | 0.0 | 0.08 | 18.26 | 0.01 | 1.983 | 27.95 | 10.24 | 8.6 | 91.0 | 0.5 | -1.69 | 0.83 | 0.76 | — | 3.9 | 0.004 | 0.81 | 0.0 | 0.05 | 13.51 | 0.00 | 2.100 | 29.44 | 0.07 | 8.5 | 91.4 | 0.1 | -1.74 | 1.83 | 0.84 | 0.80 | — | 12511 | 1580 | 5 | 0 | 12 | 0 | 0 | logfile |
✔ | 7KPW | 22990 | 2022-07-03 | 2020-11-12 | 4.9 | 5.04 | 4.74 | 4.9 | 0.009 | 1.54 | 4.0 | 0.10 | 1.89 | 0.01 | 2.279 | 3.61 | 0.00 | 3.9 | 94.9 | 1.2 | 4.09 | 0.75 | 0.67 | — | 4.8 | 0.005 | 0.86 | 0.0 | 0.04 | 6.91 | 0.00 | 2.059 | 5.41 | 0.00 | 14.6 | 84.8 | 0.6 | -1.66 | 2.04 | 0.83 | 0.83 | — | 4313 | 865 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7AFK | 11768 | 2022-07-04 | 2020-09-19 | 4.9 | 5.45 | 4.73 | 3.0 | 0.007 | 0.89 | 1.0 | 0.05 | 18.26 | 0.00 | 1.519 | 42.50 | 0.00 | 8.4 | 91.6 | 0.0 | -2.88 | 0.87 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18521 | 1108 | 11 | 456 | 13 | 0 | 0 | logfile |
✘ | 5ZCS | 6913 | 2022-07-08 | 2018-02-20 | 4.9 | 5.50 | — | 6.9 | 0.003 | 0.77 | 0.0 | 0.05 | 9.66 | 0.01 | 2.281 | 3.34 | 0.05 | 5.6 | 94.3 | 0.1 | -5.28 | 0.85 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 49176 | 6644 | 8 | 0 | 278 | 0 | 0 | logfile |
✔ | 7K9L | 22754 | 2022-07-03 | 2020-09-29 | 4.9 | 4.39 | — | 4.7 | 0.007 | 1.19 | 0.0 | 0.07 | 15.28 | 0.01 | 2.254 | 9.64 | 3.96 | 3.5 | 96.5 | 0.0 | -1.98 | 0.67 | 0.78 | — | 4.7 | 0.003 | 0.75 | 0.0 | 0.04 | 14.20 | 0.00 | 2.241 | 18.09 | 0.36 | 5.0 | 95.0 | 0.0 | -0.45 | 1.07 | 0.69 | 0.78 | — | 10472 | 1372 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J6F | 5896 | 2022-07-03 | 2014-02-19 | 4.9 | 4.97 | — | 4.9 | 0.021 | 2.64 | 64.0 | 0.14 | 14.01 | 0.01 | 2.069 | 6.10 | 0.14 | 3.1 | 96.3 | 0.6 | -1.05 | 0.62 | 0.66 | — | 4.9 | 0.003 | 0.75 | 0.0 | 0.05 | 14.46 | 0.01 | 1.799 | 21.19 | 0.09 | 3.0 | 97.0 | 0.0 | 0.30 | 2.79 | 0.69 | 0.81 | — | 60903 | 7686 | 45 | 9 | 18 | 36 | 0 | logfile |
✔ | 6PoM | 20416 | 2022-07-03 | 2019-07-04 | 4.9 | 5.01 | — | 5.0 | 0.003 | 0.64 | 0.0 | 0.03 | 17.29 | 0.00 | 2.075 | 3.10 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.61 | 0.64 | — | 5.0 | 0.010 | 1.24 | 0.0 | 0.06 | 21.39 | 0.01 | 1.928 | 58.97 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.75 | 0.75 | 0.80 | — | 4937 | 0 | 2 | 230 | 0 | 0 | 0 | logfile |
✔ | 6GNi | 0044 | 2022-07-03 | 2018-05-30 | 4.9 | 4.56 | 4.23 | 4.2 | 0.008 | 1.48 | 0.0 | 0.10 | 15.17 | 0.01 | 1.943 | 21.63 | 3.68 | 6.3 | 91.3 | 2.4 | -3.39 | 0.44 | 0.63 | — | 4.2 | 0.003 | 0.65 | 0.0 | 0.04 | 13.71 | 0.01 | 1.875 | 13.47 | 0.07 | 2.9 | 97.0 | 0.2 | 0.79 | 1.66 | 0.48 | 0.73 | — | 12937 | 1632 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 3iZK | 5247 | 2022-07-03 | 2010-10-29 | 4.9 | 4.48 | — | 7.1 | 0.014 | 1.48 | 16.0 | 0.08 | 12.45 | 0.02 | 2.461 | 2.79 | 0.77 | 2.0 | 97.5 | 0.4 | -1.62 | 0.65 | 0.48 | — | 6.0 | 0.003 | 0.75 | 0.0 | 0.04 | 13.21 | 0.00 | 2.241 | 26.30 | 0.00 | 3.5 | 96.5 | 0.0 | -0.57 | 1.99 | 0.82 | 0.75 | — | 58448 | 7856 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 5VoT | 8721 | 2022-07-04 | 2017-05-03 | 4.9 | 4.98 | — | 4.9 | 0.004 | 0.67 | 0.0 | 0.04 | 7.57 | 0.00 | 2.126 | 11.91 | 0.00 | 8.5 | 91.5 | 0.0 | -4.03 | 0.63 | 0.71 | — | 4.9 | 0.005 | 0.71 | 0.0 | 0.04 | 11.13 | 0.00 | 2.167 | 12.70 | 0.00 | 5.1 | 94.9 | 0.0 | 0.46 | 0.86 | 0.65 | 0.80 | — | 16463 | 2322 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q9i | 13870 | 2022-07-06 | 2021-11-12 | 4.9 | 5.59 | — | 5.3 | 0.003 | 0.54 | 0.0 | 0.04 | 10.81 | 0.00 | 2.216 | 4.81 | 0.80 | 3.4 | 96.5 | 0.0 | -0.34 | 0.76 | 0.63 | — | 5.3 | 0.003 | 0.61 | 0.0 | 0.04 | 11.61 | 0.00 | 2.066 | 15.32 | 0.06 | 3.4 | 96.6 | 0.0 | -0.19 | 1.93 | 0.79 | 0.71 | — | 30966 | 3881 | 24 | 0 | 53 | 0 | 0 | logfile |
✔ | 7STi | 25429 | 2022-07-04 | 2021-11-13 | 4.9 | 6.34 | — | 4.3 | 0.004 | 0.67 | 0.0 | 0.04 | 13.50 | 0.00 | 2.001 | 25.90 | 0.20 | 7.8 | 92.0 | 0.2 | -1.35 | 0.89 | 0.83 | — | 4.3 | 0.003 | 0.65 | 0.0 | 0.05 | 13.46 | 0.00 | 2.134 | 22.71 | 0.00 | 8.5 | 91.3 | 0.2 | -1.38 | 1.62 | 0.89 | 0.83 | — | 13531 | 1678 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7o3W | 12710 | 2022-07-06 | 2021-04-03 | 4.9 | 6.81 | 5.80 | 7.1 | 0.017 | 1.84 | 0.0 | 0.11 | 18.08 | 0.01 | 0.360 | 24.19 | 0.30 | 3.5 | 96.4 | 0.2 | 1.74 | 0.66 | 0.54 | — | 6.9 | 0.004 | 0.92 | 0.0 | 0.04 | 15.56 | 0.01 | 2.027 | 26.13 | 0.04 | 1.8 | 98.1 | 0.1 | 1.66 | 2.06 | 0.75 | 0.81 | — | 138390 | 17976 | 98 | 0 | 14 | 0 | 0 | logfile |
✔ | 7RSi | 24672 | 2022-07-03 | 2021-08-11 | 4.9 | 7.04 | 5.29 | 7.8 | 0.015 | 1.51 | 0.0 | 0.07 | 12.44 | 0.01 | 2.015 | 6.36 | 0.00 | 4.5 | 94.6 | 0.9 | -0.32 | 0.82 | 0.69 | — | 7.7 | 0.003 | 0.60 | 0.0 | 0.04 | 13.12 | 0.00 | 1.828 | 17.23 | 0.00 | 6.6 | 93.4 | 0.0 | -0.40 | 1.22 | 0.83 | 0.70 | — | 10886 | 686 | 2 | 0 | 2 | 0 | 5400 | logfile |
✔ | 7BWA | 30231 | 2022-07-03 | 2020-04-14 | 4.9 | 5.10 | 4.70 | 4.8 | 0.004 | 0.77 | 0.0 | 0.05 | 15.31 | 0.00 | 1.970 | 41.31 | 0.00 | 13.4 | 86.6 | 0.0 | -4.15 | 0.80 | 0.64 | — | 4.8 | 0.003 | 0.74 | 0.0 | 0.05 | 14.24 | 0.00 | 2.128 | 19.77 | 0.00 | 8.6 | 91.4 | 0.0 | -3.02 | 1.70 | 0.79 | 0.59 | — | 11670 | 1444 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CCR | 30340 | 2022-07-06 | 2020-06-17 | 4.9 | 6.57 | — | 4.8 | 0.007 | 0.96 | 0.0 | 0.06 | 24.75 | 0.01 | 1.593 | 7.21 | 0.11 | 4.4 | 95.6 | 0.0 | -2.64 | 0.83 | 0.67 | — | 4.8 | 0.006 | 0.75 | 0.0 | 0.04 | 27.60 | 0.01 | 2.024 | 31.13 | 0.00 | 5.4 | 94.6 | 0.0 | -0.29 | 1.56 | 0.88 | 0.78 | — | 29722 | 2202 | 22 | 588 | 0 | 0 | 0 | logfile |
✔ | 6ZQF | 11362 | 2022-07-05 | 2020-07-09 | 4.9 | 5.01 | — | 4.8 | 0.009 | 1.42 | 25.0 | 0.08 | 17.00 | 0.01 | 0.887 | 15.97 | 0.00 | 6.2 | 92.3 | 1.5 | -2.85 | 0.69 | 0.48 | — | 4.8 | 0.005 | 0.94 | 0.0 | 0.05 | 18.65 | 0.00 | 1.930 | 21.25 | 0.00 | 12.6 | 87.1 | 0.3 | -2.62 | 1.55 | 0.81 | 0.72 | — | 89582 | 11884 | 43 | 1447 | 1 | 0 | 0 | logfile |
✘ | 6P7N | 20267 | 2022-07-07 | 2019-06-06 | 4.9 | 9.02 | 6.14 | 4.9 | 0.002 | 0.53 | 0.0 | 0.04 | 14.46 | 0.00 | 2.152 | 6.68 | 1.33 | 5.6 | 94.4 | 0.0 | -3.30 | 0.81 | 0.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20356 | 2352 | 10 | 52 | 4 | 0 | 0 | logfile |
✔ | 3JAP | 3048 | 2022-07-06 | 2015-06-18 | 4.9 | 5.03 | 5.08 | 5.0 | 0.007 | 1.39 | 79.0 | 0.11 | 22.42 | 0.01 | 1.307 | 9.55 | 13.17 | 10.9 | 85.8 | 3.4 | -1.68 | 0.68 | 0.69 | — | 4.9 | 0.004 | 0.80 | 0.0 | 0.04 | 19.12 | 0.01 | 1.219 | 25.22 | 0.03 | 10.0 | 89.2 | 0.8 | -1.85 | 2.20 | 0.72 | 0.80 | — | 98333 | 7272 | 53 | 1869 | 255 | 0 | 0 | logfile |