Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7S0E	24788	2022-07-03	2021-08-30	4.9	4.98	—	4.8	0.004	0.87	0.0	0.05	13.44	0.01	1.886	21.60	1.22	8.1	91.3	0.7	-1.76	0.77	0.67	—	4.8	0.003	0.74	0.0	0.05	12.86	0.01	2.143	17.68	0.00	8.4	91.4	0.2	-1.69	1.17	0.78	0.72	—	8248	1076	3	0	0	0	0	logfile
✔	7MoA	23922	2022-07-03	2021-05-01	4.9	4.75	—	4.0	0.011	1.36	0.0	0.08	18.26	0.01	1.983	27.95	10.24	8.6	91.0	0.5	-1.69	0.83	0.76	—	3.9	0.004	0.81	0.0	0.05	13.51	0.00	2.100	29.44	0.07	8.5	91.4	0.1	-1.74	1.83	0.84	0.80	—	12511	1580	5	0	12	0	0	logfile
✔	7KPW	22990	2022-07-03	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.8	0.005	0.86	0.0	0.04	6.91	0.00	2.059	5.41	0.00	14.6	84.8	0.6	-1.66	2.04	0.83	0.83	—	4313	865	1	0	0	0	0	logfile
✘	7AFK	11768	2022-07-04	2020-09-19	4.9	5.45	4.73	3.0	0.007	0.89	1.0	0.05	18.26	0.00	1.519	42.50	0.00	8.4	91.6	0.0	-2.88	0.87	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18521	1108	11	456	13	0	0	logfile
✘	5ZCS	6913	2022-07-08	2018-02-20	4.9	5.50	—	6.9	0.003	0.77	0.0	0.05	9.66	0.01	2.281	3.34	0.05	5.6	94.3	0.1	-5.28	0.85	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	49176	6644	8	0	278	0	0	logfile
✔	7K9L	22754	2022-07-03	2020-09-29	4.9	4.39	—	4.7	0.007	1.19	0.0	0.07	15.28	0.01	2.254	9.64	3.96	3.5	96.5	0.0	-1.98	0.67	0.78	—	4.7	0.003	0.75	0.0	0.04	14.20	0.00	2.241	18.09	0.36	5.0	95.0	0.0	-0.45	1.07	0.69	0.78	—	10472	1372	4	0	0	0	0	logfile
✔	3J6F	5896	2022-07-03	2014-02-19	4.9	4.97	—	4.9	0.021	2.64	64.0	0.14	14.01	0.01	2.069	6.10	0.14	3.1	96.3	0.6	-1.05	0.62	0.66	—	4.9	0.003	0.75	0.0	0.05	14.46	0.01	1.799	21.19	0.09	3.0	97.0	0.0	0.30	2.79	0.69	0.81	—	60903	7686	45	9	18	36	0	logfile
✔	6PoM	20416	2022-07-03	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	17.29	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	5.0	0.010	1.24	0.0	0.06	21.39	0.01	1.928	58.97	0.00	0.0	0.0	0.0	—	1.75	0.75	0.80	—	4937	0	2	230	0	0	0	logfile
✔	6GNi	0044	2022-07-03	2018-05-30	4.9	4.56	4.23	4.2	0.008	1.48	0.0	0.10	15.17	0.01	1.943	21.63	3.68	6.3	91.3	2.4	-3.39	0.44	0.63	—	4.2	0.003	0.65	0.0	0.04	13.71	0.01	1.875	13.47	0.07	2.9	97.0	0.2	0.79	1.66	0.48	0.73	—	12937	1632	6	0	4	0	0	logfile
✔	3iZK	5247	2022-07-03	2010-10-29	4.9	4.48	—	7.1	0.014	1.48	16.0	0.08	12.45	0.02	2.461	2.79	0.77	2.0	97.5	0.4	-1.62	0.65	0.48	—	6.0	0.003	0.75	0.0	0.04	13.21	0.00	2.241	26.30	0.00	3.5	96.5	0.0	-0.57	1.99	0.82	0.75	—	58448	7856	16	0	0	0	0	logfile
✔	5VoT	8721	2022-07-04	2017-05-03	4.9	4.98	—	4.9	0.004	0.67	0.0	0.04	7.57	0.00	2.126	11.91	0.00	8.5	91.5	0.0	-4.03	0.63	0.71	—	4.9	0.005	0.71	0.0	0.04	11.13	0.00	2.167	12.70	0.00	5.1	94.9	0.0	0.46	0.86	0.65	0.80	—	16463	2322	8	0	0	0	0	logfile
✔	7Q9i	13870	2022-07-06	2021-11-12	4.9	5.59	—	5.3	0.003	0.54	0.0	0.04	10.81	0.00	2.216	4.81	0.80	3.4	96.5	0.0	-0.34	0.76	0.63	—	5.3	0.003	0.61	0.0	0.04	11.61	0.00	2.066	15.32	0.06	3.4	96.6	0.0	-0.19	1.93	0.79	0.71	—	30966	3881	24	0	53	0	0	logfile
✔	7STi	25429	2022-07-04	2021-11-13	4.9	6.34	—	4.3	0.004	0.67	0.0	0.04	13.50	0.00	2.001	25.90	0.20	7.8	92.0	0.2	-1.35	0.89	0.83	—	4.3	0.003	0.65	0.0	0.05	13.46	0.00	2.134	22.71	0.00	8.5	91.3	0.2	-1.38	1.62	0.89	0.83	—	13531	1678	3	0	0	0	0	logfile
✔	7o3W	12710	2022-07-06	2021-04-03	4.9	6.81	5.80	7.1	0.017	1.84	0.0	0.11	18.08	0.01	0.360	24.19	0.30	3.5	96.4	0.2	1.74	0.66	0.54	—	6.9	0.004	0.92	0.0	0.04	15.56	0.01	2.027	26.13	0.04	1.8	98.1	0.1	1.66	2.06	0.75	0.81	—	138390	17976	98	0	14	0	0	logfile
✔	7RSi	24672	2022-07-03	2021-08-11	4.9	7.04	5.29	7.8	0.015	1.51	0.0	0.07	12.44	0.01	2.015	6.36	0.00	4.5	94.6	0.9	-0.32	0.82	0.69	—	7.7	0.003	0.60	0.0	0.04	13.12	0.00	1.828	17.23	0.00	6.6	93.4	0.0	-0.40	1.22	0.83	0.70	—	10886	686	2	0	2	0	5400	logfile
✔	7BWA	30231	2022-07-03	2020-04-14	4.9	5.10	4.70	4.8	0.004	0.77	0.0	0.05	15.31	0.00	1.970	41.31	0.00	13.4	86.6	0.0	-4.15	0.80	0.64	—	4.8	0.003	0.74	0.0	0.05	14.24	0.00	2.128	19.77	0.00	8.6	91.4	0.0	-3.02	1.70	0.79	0.59	—	11670	1444	4	0	0	0	0	logfile
✔	7CCR	30340	2022-07-06	2020-06-17	4.9	6.57	—	4.8	0.007	0.96	0.0	0.06	24.75	0.01	1.593	7.21	0.11	4.4	95.6	0.0	-2.64	0.83	0.67	—	4.8	0.006	0.75	0.0	0.04	27.60	0.01	2.024	31.13	0.00	5.4	94.6	0.0	-0.29	1.56	0.88	0.78	—	29722	2202	22	588	0	0	0	logfile
✔	6ZQF	11362	2022-07-05	2020-07-09	4.9	5.01	—	4.8	0.009	1.42	25.0	0.08	17.00	0.01	0.887	15.97	0.00	6.2	92.3	1.5	-2.85	0.69	0.48	—	4.8	0.005	0.94	0.0	0.05	18.65	0.00	1.930	21.25	0.00	12.6	87.1	0.3	-2.62	1.55	0.81	0.72	—	89582	11884	43	1447	1	0	0	logfile
✘	6P7N	20267	2022-07-07	2019-06-06	4.9	9.02	6.14	4.9	0.002	0.53	0.0	0.04	14.46	0.00	2.152	6.68	1.33	5.6	94.4	0.0	-3.30	0.81	0.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20356	2352	10	52	4	0	0	logfile
✔	3JAP	3048	2022-07-06	2015-06-18	4.9	5.03	5.08	5.0	0.007	1.39	79.0	0.11	22.42	0.01	1.307	9.55	13.17	10.9	85.8	3.4	-1.68	0.68	0.69	—	4.9	0.004	0.80	0.0	0.04	19.12	0.01	1.219	25.22	0.03	10.0	89.2	0.8	-1.85	2.20	0.72	0.80	—	98333	7272	53	1869	255	0	0	logfile

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