Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5U0A	8478	2023-04-28	2016-11-23	3.3	3.41	—	3.4	0.012	1.37	1.0	0.08	16.04	0.01	1.667	28.66	5.48	4.6	94.8	0.6	-2.78	0.65	0.74	1.61	3.4	0.003	0.65	0.0	0.04	17.79	0.00	2.102	13.31	0.38	3.4	96.6	0.1	0.14	1.92	0.73	0.85	1.68	28923	3329	14	144	0	0	0	logfile
✔	8CTH	26990	2023-04-20	2022-05-14	3.3	3.53	3.29	3.5	0.014	1.05	0.0	0.04	15.98	0.07	2.257	12.01	0.00	3.3	96.7	0.0	-1.68	0.64	0.67	1.91	3.6	0.003	1.28	0.0	0.04	17.86	0.01	2.072	13.10	0.47	5.0	95.0	0.0	-1.02	1.22	0.65	0.68	2.27	5544	495	4	74	0	0	0	logfile
✔	7SJR	25164	2023-04-22	2021-10-18	3.8	3.91	—	3.8	0.005	0.79	0.0	0.04	17.55	0.01	1.895	13.38	0.08	8.9	91.1	0.0	-1.61	0.77	0.83	1.72	3.8	0.003	0.62	0.0	0.04	18.86	0.00	2.044	8.50	0.00	6.8	93.2	0.0	-0.08	1.14	0.76	0.82	0.82	13696	1713	4	35	3	0	0	logfile
✔	7o6P	12739	2023-04-20	2021-04-12	2.04	2.55	—	2.1	0.008	0.59	0.0	0.05	11.73	0.00	2.140	6.08	0.93	1.8	98.2	0.0	-0.54	0.90	0.88	5.90	2.1	0.002	0.47	0.0	0.04	13.52	0.00	2.251	5.96	0.00	2.0	98.0	0.0	2.22	0.39	0.90	0.92	5.36	8276	1022	8	0	0	268	0	logfile
✔	7UVT	26816	2023-04-22	2022-05-02	3.9	4.17	4.00	4.1	0.001	0.41	0.0	0.02	16.13	0.00	1.897	6.61	0.00	0.0	0.0	0.0	—	0.76	0.74	—	4.1	0.006	0.70	0.0	0.04	17.94	0.01	1.892	21.35	0.00	0.0	0.0	0.0	—	0.48	0.77	0.76	—	12409	0	1	386	0	0	4149	logfile
✔	6XL6	22235	2023-04-20	2020-06-28	3.0	3.41	—	3.3	0.005	0.68	0.0	0.05	20.19	0.00	2.257	5.23	0.00	0.0	100.0	0.0	-1.93	0.76	0.83	2.94	3.3	0.003	0.53	0.0	0.04	21.18	0.00	2.275	6.47	2.65	1.3	98.7	0.0	0.64	1.38	0.74	0.83	2.39	5456	536	6	46	4	0	0	logfile
✔	8HS3	34984	2023-04-20	2022-12-16	3.14	3.64	3.25	3.6	0.005	0.75	0.0	0.05	16.98	0.01	2.141	7.14	0.36	5.6	94.4	0.0	-1.38	0.55	0.78	2.00	3.6	0.004	0.60	0.0	0.04	17.14	0.00	2.156	9.99	0.24	5.1	94.9	0.0	-0.41	0.31	0.54	0.77	2.03	8258	1124	5	0	0	0	0	logfile
✔	7SK2	25170	2023-04-20	2021-10-19	3.82	4.03	—	3.9	0.007	1.22	0.0	0.06	13.60	0.01	2.235	8.03	0.00	4.7	95.3	0.0	-2.59	0.49	0.69	1.11	3.9	0.003	0.83	0.0	0.04	16.15	0.00	2.138	18.38	0.94	5.3	94.7	0.0	-0.55	0.53	0.50	0.69	1.30	4177	532	1	0	1	0	0	logfile
✔	7Y85	33681	2023-04-24	2022-06-22	2.73	3.04	2.87	3.0	0.004	0.57	0.0	0.04	18.77	0.00	1.940	15.62	3.87	2.3	97.7	0.0	-0.05	0.55	0.75	2.97	3.0	0.005	0.60	0.0	0.04	19.03	0.00	1.935	16.15	4.30	2.4	97.6	0.0	0.11	0.32	0.59	0.78	2.93	16502	1884	5	59	5	0	0	logfile
✔	7SCZ	25043	2023-04-26	2021-09-29	3.5	4.01	3.49	3.8	0.014	1.91	1.0	0.09	27.47	0.03	2.529	0.04	0.00	1.7	98.3	0.0	0.09	0.80	0.77	2.51	3.8	0.005	0.64	0.0	0.04	27.89	0.00	1.967	6.90	0.00	2.2	97.8	0.0	2.69	1.42	0.79	0.80	1.57	23205	850	11	294	0	0	10435	logfile
✔	8GUD	34273	2023-04-20	2022-09-11	2.62	2.98	2.83	3.1	0.008	0.79	0.0	0.05	14.80	0.01	2.116	20.31	0.00	6.0	94.0	0.0	-2.12	0.52	0.56	1.45	3.1	0.003	0.65	0.0	0.04	17.32	0.00	2.168	17.15	1.85	4.4	95.6	0.0	-1.16	1.14	0.49	0.56	1.07	6814	835	1	0	1	0	0	logfile
✔	6N3Q	0336	2023-04-21	2018-11-16	3.68	4.01	—	4.0	0.006	1.03	0.0	0.05	10.91	0.01	2.308	4.48	0.67	3.2	96.8	0.0	-3.32	0.63	0.78	2.20	4.0	0.005	0.80	0.0	0.04	15.42	0.00	2.175	12.10	0.86	4.4	95.6	0.0	0.89	2.71	0.69	0.81	1.66	9931	1290	6	0	0	0	0	logfile
✔	7WHR	32509	2023-04-24	2021-12-31	3.4	4.06	—	4.0	0.003	0.60	0.0	0.05	13.11	0.00	2.190	10.13	0.00	7.4	92.6	0.0	-2.33	0.66	0.74	2.21	4.0	0.002	0.65	0.0	0.05	15.04	0.00	2.235	10.83	0.11	6.9	93.0	0.1	-2.70	0.36	0.63	0.70	1.70	16914	2184	6	0	0	0	0	logfile
✔	6VYG	21459	2023-04-22	2020-02-26	3.5	3.58	—	3.5	0.004	0.69	0.0	0.04	14.05	0.00	2.094	7.99	0.54	9.2	90.8	0.0	-3.60	0.73	0.84	3.44	3.5	0.002	0.58	0.0	0.04	16.12	0.00	2.160	7.84	0.20	6.9	93.1	0.0	-0.78	0.43	0.71	0.83	2.28	13616	1732	4	0	0	0	0	logfile
✔	7TTi	26116	2023-04-20	2022-02-01	3.5	3.76	—	3.8	0.006	0.65	0.0	0.04	13.49	0.01	1.990	50.92	0.28	7.7	92.3	0.0	1.88	0.46	0.65	2.20	3.8	0.004	0.73	0.0	0.04	14.47	0.01	2.221	10.17	0.00	6.5	93.5	0.0	0.78	0.60	0.62	0.78	2.28	7670	1084	8	0	10	0	0	logfile
✔	7WLJ	32585	2023-04-21	2022-01-13	3.9	4.18	—	4.1	0.009	1.01	0.0	0.14	14.59	0.00	1.912	18.90	0.10	6.7	93.3	0.0	0.03	0.59	0.80	1.62	4.1	0.003	0.88	0.0	0.05	16.21	0.00	2.150	16.14	0.20	6.6	93.4	0.0	-0.06	0.67	0.60	0.80	0.94	9450	1135	1	0	15	0	0	logfile
✔	7VFX	31962	2023-04-21	2021-09-14	2.8	2.73	2.85	2.9	0.003	0.65	0.0	0.05	13.95	0.00	2.225	5.38	0.00	3.1	96.9	0.0	0.41	0.70	0.87	3.94	2.9	0.002	0.55	0.0	0.04	16.05	0.00	2.136	4.82	0.72	2.9	97.1	0.0	1.09	1.24	0.71	0.89	3.74	9004	1139	7	0	4	0	0	logfile
✔	7S1X	24807	2023-04-22	2021-09-02	2.9	3.15	—	3.3	0.005	0.83	2.0	0.05	12.05	0.01	2.052	18.39	0.17	9.9	90.1	0.0	-0.65	0.51	0.72	3.89	3.2	0.003	0.64	2.0	0.04	15.22	0.00	2.090	10.45	3.55	8.2	91.8	0.0	0.13	0.52	0.61	0.81	3.52	12658	1742	4	0	6	0	0	logfile
✔	7T2H	25613	2023-04-20	2021-12-04	3.2	3.41	3.23	3.4	0.004	0.52	0.0	0.15	14.12	0.00	2.158	8.69	0.65	3.6	96.4	0.0	-3.17	0.66	0.81	3.01	3.4	0.004	0.71	0.0	0.09	15.51	0.00	2.167	10.26	0.43	2.7	97.3	0.0	-0.64	0.42	0.60	0.79	2.44	8677	1119	5	0	1	0	0	logfile
✔	8GSZ	34244	2023-04-20	2022-09-07	3.65	3.14	3.68	3.8	0.006	0.86	0.0	0.05	15.61	0.01	2.241	12.76	0.39	2.7	97.3	0.0	-5.38	0.62	0.76	1.72	3.8	0.003	0.69	0.0	0.04	17.49	0.00	2.123	9.67	0.39	4.0	96.0	0.0	-0.70	0.76	0.62	0.76	0.90	4870	620	2	0	0	0	0	logfile

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