Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6TGY	10501	2021-08-12	2019-11-18	3.5	3.59	3.49	3.5	0.007	1.10	0.0	0.05	10.46	0.01	2.359	1.88	0.00	16.6	83.4	0.0	-5.42	0.69	0.73	3.89	3.5	0.004	0.66	0.0	0.04	14.73	0.01	2.166	6.58	0.54	13.3	86.7	0.0	-1.03	1.31	0.76	0.82	2.86	96960	12480	120	0	0	0	0	logfile
✔	6PP8	20422	2021-08-10	2019-07-05	4.12	4.53	—	4.3	0.003	0.72	0.0	0.04	12.10	0.01	2.116	2.90	0.00	0.2	99.8	0.0	-2.36	0.80	0.76	—	4.3	0.004	0.60	0.0	0.04	12.78	0.00	1.823	11.51	0.00	4.7	95.3	0.0	-0.86	1.03	0.83	0.80	—	32335	2078	13	0	13	0	16234	logfile
✔	4V91	2599	2021-08-10	2014-03-21	3.7	3.84	—	3.8	0.133	4.77	525.0	0.43	20.66	0.07	0.695	19.16	12.79	15.8	74.0	10.2	-5.88	0.33	0.36	0.15	3.8	0.034	1.36	1.0	0.04	17.51	0.02	1.640	17.24	0.28	9.3	89.8	0.9	-3.08	2.57	0.64	0.82	1.58	125665	6450	45	3482	0	0	0	logfile
✔	6PoS	20418	2021-08-08	2019-07-05	4.12	4.39	—	4.2	0.003	0.68	0.0	0.04	11.58	0.01	2.116	2.43	0.00	0.1	99.9	0.0	-2.43	0.80	0.77	—	4.2	0.004	0.58	0.0	0.04	13.09	0.00	1.834	10.96	0.00	4.8	95.2	0.0	-0.06	1.07	0.82	0.80	—	53503	3425	20	0	13	0	26853	logfile
✔	5VLY	8708	2021-08-09	2017-04-26	3.3	3.50	—	3.5	0.008	0.95	0.0	0.06	9.15	0.01	0.762	33.05	0.00	8.0	92.0	0.0	-6.40	0.59	0.75	2.98	3.5	0.007	1.02	0.0	0.05	13.21	0.01	2.046	13.03	0.40	5.5	94.5	0.0	-4.29	0.67	0.67	0.81	2.18	171720	23280	180	0	0	0	0	logfile
✔	5JUo	6648	2021-08-16	2016-05-10	4.0	4.65	—	3.6	0.021	1.30	0.0	0.15	17.54	0.01	1.298	41.10	10.58	20.9	71.5	7.6	-6.44	0.72	0.53	—	3.6	0.007	1.01	3.0	0.05	18.94	0.01	1.839	40.67	0.54	15.8	83.3	0.9	-4.14	0.93	0.81	0.70	—	215363	12391	84	5568	2	0	0	logfile
✔	5T62	8362	2021-08-11	2016-09-01	3.3	3.38	—	3.4	0.007	1.13	5.0	0.09	17.39	0.01	1.390	1.86	6.32	8.1	89.7	2.2	-4.03	0.68	0.78	3.21	3.3	0.007	0.78	0.0	0.04	16.41	0.01	1.069	5.69	0.10	7.0	92.3	0.7	-1.75	1.27	0.73	0.84	2.59	131766	7061	57	3483	438	6	0	logfile
✔	6AB5	6999	2021-08-12	2018-07-20	3.7	3.79	—	3.7	0.007	0.97	6.0	0.06	11.27	0.01	1.686	24.36	0.75	5.6	94.4	0.0	-3.80	0.85	0.86	3.48	3.7	0.004	0.59	0.0	0.05	13.96	0.00	2.147	11.21	0.42	5.4	94.6	0.0	-1.84	0.65	0.86	0.87	2.23	139740	18180	60	0	0	0	0	logfile
✔	6QJQ	4566	2021-08-07	2019-01-24	3.7	3.99	2.14	4.1	0.021	1.17	0.0	0.11	13.36	0.01	2.499	5.58	0.00	4.0	94.0	2.0	-4.41	0.39	0.75	2.60	4.2	0.005	0.83	0.0	0.05	14.21	0.00	2.290	9.97	0.69	6.7	93.3	0.0	-3.08	2.14	0.37	0.75	1.88	1218	162	6	0	0	0	0	logfile
✔	6RBE	4793	2021-08-10	2019-04-10	3.8	3.91	3.60	2.4	0.007	1.27	0.0	0.06	18.44	0.01	2.076	9.09	1.35	11.9	86.8	1.2	-4.17	0.86	0.80	1.27	2.3	0.007	0.81	0.0	0.04	18.12	0.01	2.018	26.45	0.32	12.8	86.8	0.4	-1.91	1.73	0.86	0.78	0.80	72721	4512	33	1750	0	0	0	logfile
✔	6XYo	10650	2021-08-07	2020-01-30	2.6	2.79	2.31	2.7	0.008	0.74	0.0	0.06	12.93	0.00	2.300	5.78	0.93	2.6	97.4	0.0	-2.90	0.46	0.89	5.98	2.7	0.005	0.57	0.0	0.05	18.09	0.00	2.185	4.80	2.22	3.1	96.9	0.0	-1.78	0.97	0.49	0.90	4.64	5490	800	10	0	0	0	0	logfile
✔	3J9M	2876	2021-08-18	2015-02-08	3.5	3.59	3.50	3.5	0.007	1.35	38.0	0.09	19.29	0.01	1.242	5.61	9.06	8.2	89.4	2.4	-1.72	0.66	0.76	1.82	3.5	0.006	0.79	2.0	0.04	18.28	0.01	1.507	14.73	0.29	6.8	92.6	0.6	0.05	0.92	0.70	0.80	1.51	158384	12902	97	2454	309	0	0	logfile
✔	6EZJ	3999	2021-08-10	2017-11-15	3.1	3.22	—	3.2	0.007	1.11	0.0	0.05	11.12	0.01	2.111	3.82	0.00	8.2	91.8	0.0	-5.02	0.68	0.77	3.52	3.2	0.005	0.84	0.0	0.05	15.78	0.01	1.690	8.81	0.84	9.9	90.1	0.0	-1.47	1.97	0.73	0.81	3.83	33600	4440	48	0	72	0	0	logfile
✔	6DBo	7846	2021-08-08	2018-05-03	4.4	4.68	—	4.4	0.009	1.35	0.0	0.07	22.20	0.01	1.874	24.81	0.00	6.8	92.4	0.7	-4.15	0.86	0.82	—	4.4	0.003	0.79	0.0	0.04	19.60	0.00	2.099	18.14	0.00	4.1	95.9	0.0	-0.94	1.03	0.87	0.83	—	16820	1786	10	128	6	0	0	logfile
✔	6RW9	10035	2021-08-12	2019-06-04	3.27	3.69	—	3.3	0.008	1.10	0.0	0.06	9.91	0.01	2.258	5.96	0.37	6.7	93.2	0.0	-3.60	0.85	0.80	2.61	3.3	0.003	0.70	0.0	0.04	14.29	0.00	2.046	12.15	0.29	4.9	95.1	0.0	0.58	2.15	0.86	0.86	1.72	88700	11425	5	0	0	0	0	logfile
✔	6TMF	10519	2021-08-09	2019-12-04	2.8	2.90	—	2.8	0.017	1.11	2.0	0.07	15.98	0.01	1.750	4.66	0.73	9.5	90.0	0.5	-3.66	0.85	0.85	3.51	2.8	0.004	0.66	0.0	0.04	16.89	0.01	1.909	9.68	2.77	7.4	92.6	0.1	-0.57	1.21	0.88	0.90	2.74	65449	4172	35	1485	37	0	0	logfile
✔	5XTE	6774	2021-08-10	2017-06-19	3.4	3.53	—	3.4	0.009	1.31	2.0	0.22	12.53	0.01	1.408	20.76	1.49	5.0	93.6	1.4	-0.90	0.77	0.79	2.93	3.4	0.004	0.75	0.0	0.04	15.44	0.00	2.041	11.78	0.23	4.3	95.5	0.2	0.65	1.36	0.80	0.85	2.39	34492	4222	35	0	26	0	0	logfile
✔	6RW6	10033	2021-08-13	2019-06-04	2.75	2.81	—	2.7	0.011	0.96	0.0	0.06	9.75	0.01	2.148	4.10	0.00	2.2	97.8	0.0	-3.68	0.85	0.87	4.43	2.7	0.003	0.60	0.0	0.04	14.96	0.00	2.117	7.20	1.42	2.1	97.9	0.0	1.73	3.28	0.87	0.89	3.53	98645	12425	5	0	0	0	0	logfile
✔	6TH3	10502	2021-08-09	2019-11-18	4.0	4.17	4.09	4.0	0.007	1.10	0.0	0.05	10.47	0.01	2.268	4.52	0.00	16.5	83.5	0.0	-5.42	0.64	0.56	—	4.0	0.006	0.91	0.0	0.05	15.59	0.01	2.168	11.44	0.76	12.9	87.1	0.0	-1.73	1.75	0.75	0.78	—	60600	7800	75	0	0	0	0	logfile
✔	6S12	10078	2021-08-14	2019-06-18	3.2	3.25	—	3.2	0.015	1.21	0.0	0.06	19.57	0.01	1.590	12.90	15.92	14.1	85.8	0.1	-5.24	0.61	0.59	1.73	3.2	0.006	0.75	0.0	0.04	19.01	0.01	1.750	13.69	1.04	12.0	88.0	0.0	-3.02	1.82	0.77	0.78	2.04	146017	3125	30	3020	0	0	57352	logfile

• ← previous
• Page 2 of 276
• next →