Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7CX3	30490	2022-12-11	2020-09-01	2.8	3.05	—	3.0	0.006	0.66	0.0	0.05	12.64	0.00	2.109	8.18	0.00	4.0	96.0	0.0	-1.96	0.68	0.81	3.41	3.0	0.005	0.64	0.0	0.04	15.61	0.00	2.065	7.10	1.91	3.4	96.6	0.0	0.51	1.12	0.68	0.84	3.06	7923	1019	6	0	1	0	0	logfile
✔	7NHo	12335	2022-12-14	2021-02-11	2.66	3.46	—	3.3	0.014	2.16	1.0	0.44	18.54	0.02	1.974	2.75	1.77	5.4	94.4	0.1	-2.33	0.58	0.79	3.76	3.3	0.003	0.68	0.0	0.04	17.59	0.00	1.823	9.53	2.19	2.8	97.2	0.0	1.21	1.70	0.62	0.84	3.19	19800	2086	26	0	62	0	0	logfile
✔	7NHP	12336	2022-12-14	2021-02-11	2.72	3.45	—	3.4	0.012	2.19	0.0	0.30	18.46	0.02	1.924	6.09	1.36	5.8	93.8	0.3	-2.63	0.58	0.78	3.10	3.3	0.004	0.77	0.0	0.04	17.90	0.00	2.046	11.50	2.83	3.5	96.5	0.0	0.81	1.38	0.61	0.82	2.97	21839	2350	26	0	60	0	0	logfile
✔	6WWG	21934	2022-12-14	2020-05-09	2.9	2.24	2.91	2.1	0.007	0.93	0.0	0.06	14.85	0.02	1.969	6.56	2.58	4.7	95.1	0.3	-3.52	0.66	0.80	4.17	2.2	0.003	0.68	0.0	0.04	17.34	0.00	1.916	8.82	2.49	3.5	96.5	0.0	-0.26	0.68	0.67	0.85	3.29	19749	2479	12	2	10	0	0	logfile
✔	7NHQ	12337	2022-12-14	2021-02-11	2.68	3.36	—	3.3	0.012	2.31	4.0	0.41	19.45	0.02	1.790	4.57	1.77	5.1	94.6	0.3	-2.58	0.59	0.77	3.11	3.3	0.003	0.77	0.0	0.04	18.19	0.00	1.726	11.06	2.59	3.4	96.6	0.0	0.90	1.75	0.61	0.82	3.34	20946	2237	27	0	60	0	0	logfile
✔	7LV8	23529	2022-12-12	2021-02-24	3.4	3.85	3.57	3.8	0.003	0.65	0.0	0.04	27.28	0.00	1.334	3.06	0.17	2.7	97.3	0.0	-3.26	0.70	0.78	0.97	3.9	0.003	0.58	0.0	0.03	27.73	0.00	2.150	9.74	0.33	1.9	98.1	0.0	2.31	0.58	0.70	0.79	1.13	10651	764	10	242	0	0	0	logfile
✔	6Z5U	11082	2022-12-13	2020-05-27	3.9	4.52	—	38.0	0.021	1.88	10.0	0.11	11.91	0.01	0.901	4.94	1.69	2.0	97.7	0.3	-0.47	0.18	0.03	-0.06	4.5	0.003	0.76	0.0	0.04	14.53	0.00	1.928	14.28	0.41	5.2	94.8	0.0	-0.62	1.59	0.29	0.18	0.56	17880	2334	14	0	4	0	0	logfile
✔	7LMA	23437	2022-12-14	2021-02-05	3.3	3.45	—	3.4	0.004	0.56	0.0	0.04	16.77	0.00	2.202	6.67	0.91	4.3	95.7	0.0	-2.64	0.73	0.82	2.57	3.4	0.002	0.53	0.0	0.04	17.79	0.00	2.070	7.80	0.12	2.8	97.2	0.0	0.36	0.56	0.76	0.84	1.88	18672	1837	9	170	1	0	0	logfile
✔	7LJF	23392	2022-12-13	2021-01-29	4.0	4.34	—	4.2	0.003	0.62	0.0	0.04	13.74	0.00	1.987	14.43	0.41	3.4	96.6	0.0	0.00	0.83	0.80	—	4.2	0.006	0.77	0.0	0.05	15.72	0.00	1.752	24.09	0.41	6.1	93.9	0.0	-0.76	0.36	0.83	0.82	—	15742	2007	9	0	6	0	0	logfile
✔	7BiN	12192	2022-12-19	2021-01-12	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	81721	10887	56	0	0	0	0	logfile
✔	7E23	30950	2022-12-11	2021-02-04	3.3	3.62	—	3.6	0.004	0.82	0.0	0.05	14.42	0.01	2.123	14.37	0.00	17.3	82.7	0.0	-3.70	0.70	0.77	2.78	3.6	0.003	0.75	0.0	0.05	16.18	0.01	2.170	13.23	0.30	15.8	84.2	0.0	-3.06	1.15	0.71	0.80	1.81	3133	403	4	0	1	0	0	logfile
✔	7EGG	31116	2022-12-12	2021-03-24	2.77	3.08	—	3.0	0.008	1.13	14.0	0.08	14.57	0.01	2.248	8.31	3.51	3.8	96.1	0.1	-3.25	0.72	0.85	3.29	3.0	0.003	0.60	0.0	0.04	17.34	0.00	2.105	10.51	2.25	4.1	95.9	0.1	0.48	1.07	0.66	0.85	2.98	10062	1259	7	0	0	0	0	logfile
✔	7BC6	12140	2022-12-11	2020-12-18	3.2	3.48	3.20	3.4	0.008	0.90	0.0	0.05	13.65	0.01	2.145	9.76	0.92	7.0	93.0	0.0	-1.77	0.64	0.85	2.92	3.4	0.003	0.63	0.0	0.04	15.29	0.00	2.201	7.85	0.23	4.2	95.8	0.0	0.39	0.28	0.54	0.82	2.09	4178	549	2	0	0	0	0	logfile
✔	7LV9	23530	2022-12-11	2021-02-24	4.5	7.82	4.59	4.4	0.003	0.64	0.0	0.04	27.26	0.00	1.334	3.02	0.00	3.2	96.8	0.0	-3.35	0.82	0.66	—	4.4	0.005	0.68	0.0	0.04	29.24	0.00	2.127	22.13	0.00	3.3	96.7	0.0	1.18	1.55	0.90	0.85	—	8238	581	8	190	0	0	0	logfile
✔	7BL3	12216	2022-12-16	2021-01-18	3.5	3.69	—	3.5	0.002	0.48	0.0	0.03	14.11	0.00	2.089	12.48	0.03	6.4	93.6	0.0	-1.33	0.75	0.79	1.02	3.5	0.004	0.63	0.0	0.04	15.54	0.00	1.991	17.00	0.68	8.6	91.4	0.0	-1.72	0.59	0.76	0.82	1.25	92831	3612	39	3021	2	27	0	logfile
✔	6ZV6	11441	2022-12-15	2020-07-24	2.9	3.51	—	3.2	0.008	1.07	0.0	0.05	15.86	0.01	2.116	5.56	0.48	5.7	94.2	0.1	-3.48	0.70	0.83	2.33	3.2	0.004	0.76	0.0	0.04	17.58	0.01	1.993	16.83	3.33	6.0	93.9	0.1	-1.09	1.26	0.71	0.84	1.71	76226	5048	38	1683	5	3	0	logfile
✔	7BL5	12218	2022-12-17	2021-01-18	3.3	3.74	—	3.5	0.002	0.45	0.0	0.03	14.15	0.00	2.029	11.86	0.11	5.7	94.3	0.0	-1.05	0.75	0.79	1.02	3.5	0.003	0.62	1.0	0.03	15.88	0.00	1.918	17.71	0.68	8.2	91.8	0.0	-1.81	0.61	0.76	0.83	1.11	98927	4348	46	3033	3	27	0	logfile
✔	7M0R	23613	2022-12-16	2021-03-11	3.7	4.13	—	3.3	0.004	0.71	0.0	0.05	12.84	0.00	2.056	17.18	1.04	4.4	95.6	0.0	-2.49	0.84	0.82	1.82	3.3	0.003	0.64	0.0	0.04	14.33	0.00	2.159	15.83	0.03	4.6	95.4	0.0	-1.23	1.21	0.84	0.82	1.65	30898	4228	8	0	134	0	0	logfile
✔	7MKM	23899	2022-12-11	2021-04-24	3.16	2.47	—	2.2	0.003	0.79	0.0	0.05	13.11	0.01	2.177	7.69	0.00	2.8	97.2	0.0	-1.30	0.52	0.58	1.72	2.0	0.003	0.76	0.0	0.04	14.85	0.00	2.233	10.09	0.00	4.8	95.2	0.0	-2.02	0.61	0.53	0.62	1.93	3192	406	4	0	1	0	0	logfile
✔	7MJi	23874	2022-12-11	2021-04-20	2.81	3.32	—	3.2	0.006	0.80	0.0	0.05	12.43	0.01	2.367	2.85	0.00	2.8	97.2	0.0	-0.83	0.56	0.84	4.52	3.2	0.004	0.58	0.0	0.04	15.25	0.00	2.300	7.73	1.10	2.8	97.2	0.0	-0.01	1.44	0.57	0.85	4.21	2522	320	3	0	1	0	0	logfile

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