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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7MVV | 24057 | 2024-03-19 | 2021-05-15 | 3.22 | 4.20 | 3.24 | 3.5 | 0.002 | 0.36 | 0.0 | 0.03 | 6.43 | 0.00 | 2.161 | 3.07 | 0.07 | 1.3 | 98.7 | 0.0 | -0.66 | 0.88 | 0.76 | 0.50 | 3.5 | 0.002 | 0.50 | 0.0 | 0.03 | 10.83 | 0.00 | 2.039 | 6.48 | 0.43 | 2.7 | 97.3 | 0.0 | 3.22 | 0.92 | 0.89 | 0.81 | 1.07 | 25764 | 1609 | 4 | 0 | 0 | 0 | 12907 | logfile |
✘ | 7XL4 | 33272 | 2024-03-19 | 2022-04-21 | 3.86 | 3.92 | — | 3.8 | 0.001 | 0.36 | 0.0 | 0.04 | 9.42 | 0.00 | 2.274 | 4.13 | 0.00 | 1.4 | 98.6 | 0.0 | -4.82 | 0.78 | 0.75 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24560 | 3479 | 8 | 0 | 3 | 0 | 0 | logfile |
✔ | 8HiA | 34813 | 2024-03-11 | 2022-11-19 | 4.9 | 4.49 | 2.13 | 9.6 | 0.001 | 0.36 | 0.0 | 0.05 | 15.83 | 0.00 | 2.251 | 1.11 | 2.86 | 12.1 | 87.6 | 0.2 | -4.39 | 0.47 | 0.07 | — | 9.4 | 0.009 | 0.98 | 0.0 | 0.05 | 15.73 | 0.01 | 2.082 | 32.36 | 4.76 | 19.0 | 81.0 | 0.0 | -5.53 | 12.59 | 0.68 | 0.24 | — | 7200 | 460 | 20 | 0 | 0 | 0 | 3660 | logfile |
✘ | 8BHK | 16058 | 2024-03-20 | 2022-10-31 | 3.3 | 3.34 | 3.25 | 3.4 | 0.002 | 0.36 | 0.0 | 0.04 | 13.09 | 0.01 | 2.195 | 1.28 | 0.20 | 1.7 | 98.3 | 0.0 | 1.80 | 0.68 | 0.78 | 3.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27165 | 1680 | 10 | 0 | 10 | 0 | 13415 | logfile |
✔ | 8C96 | 16503 | 2024-03-24 | 2023-01-21 | 4.43 | 5.03 | 4.86 | 4.4 | 0.001 | 0.36 | 0.0 | 0.03 | 22.54 | 0.00 | 1.928 | 6.57 | 0.08 | 3.8 | 96.1 | 0.1 | 0.57 | 0.83 | 0.79 | — | 4.4 | 0.006 | 0.74 | 0.0 | 0.04 | 24.03 | 0.01 | 1.999 | 39.58 | 0.00 | 8.3 | 91.7 | 0.0 | -1.84 | 0.94 | 0.84 | 0.85 | — | 44214 | 1607 | 16 | 1475 | 0 | 0 | 0 | logfile |
✔ | 7MVU | 24056 | 2024-03-19 | 2021-05-15 | 3.77 | 4.87 | 3.73 | 4.0 | 0.002 | 0.36 | 0.0 | 0.03 | 6.38 | 0.00 | 2.187 | 3.55 | 0.00 | 1.1 | 98.9 | 0.0 | -0.33 | 0.85 | 0.73 | 0.19 | 4.0 | 0.002 | 0.57 | 0.0 | 0.03 | 11.84 | 0.00 | 1.921 | 10.41 | 1.36 | 2.7 | 97.3 | 0.0 | 2.74 | 2.05 | 0.88 | 0.82 | 0.36 | 25645 | 1604 | 2 | 0 | 0 | 0 | 12841 | logfile |
✔ | 8G3K | 29700 | 2024-03-10 | 2023-02-08 | 2.2 | 2.34 | 2.21 | 2.3 | 0.002 | 0.36 | 0.0 | 0.03 | 9.98 | 0.00 | 2.348 | 3.50 | 0.00 | 0.7 | 99.3 | 0.0 | 5.07 | 0.46 | 0.82 | 4.79 | 2.3 | 0.003 | 0.48 | 0.0 | 0.03 | 17.08 | 0.00 | 2.386 | 4.15 | 2.88 | 0.7 | 99.3 | 0.0 | 4.64 | 1.15 | 0.47 | 0.83 | 5.16 | 2244 | 285 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XLG | 22243 | 2024-03-15 | 2020-06-28 | 2.71 | 2.81 | — | 2.8 | 0.001 | 0.36 | 0.0 | 0.04 | 10.47 | 0.00 | 2.105 | 5.84 | 0.00 | 1.3 | 98.7 | 0.0 | -3.01 | 0.73 | 0.81 | 4.05 | 2.8 | 0.003 | 0.55 | 0.0 | 0.04 | 16.60 | 0.00 | 1.963 | 9.23 | 2.52 | 2.0 | 98.0 | 0.0 | -0.31 | 3.19 | 0.78 | 0.89 | 3.97 | 12258 | 1504 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 8E41 | 27876 | 2024-03-12 | 2022-08-17 | 2.13 | 2.86 | 2.57 | 2.6 | 0.005 | 0.36 | 1.0 | 0.02 | 23.37 | 0.02 | 1.983 | 1.89 | 0.85 | 5.2 | 94.8 | 0.0 | 0.82 | 0.73 | 0.90 | 5.26 | 2.6 | 0.005 | 0.59 | 1.0 | 0.04 | 23.21 | 0.01 | 1.982 | 3.23 | 1.48 | 5.9 | 94.0 | 0.1 | 0.21 | 0.23 | 0.73 | 0.91 | 5.29 | 115744 | 1186 | 12 | 3016 | 1 | 0 | 41833 | logfile |
✔ | 6X32 | 22015 | 2024-03-12 | 2020-05-21 | 3.8 | 3.75 | — | 3.9 | 0.001 | 0.36 | 0.0 | 0.03 | 7.99 | 0.00 | 2.266 | 3.27 | 0.00 | 1.4 | 98.6 | 0.0 | -3.72 | 0.56 | 0.69 | 2.26 | 3.8 | 0.003 | 0.62 | 0.0 | 0.04 | 13.13 | 0.00 | 2.125 | 8.65 | 2.35 | 2.9 | 97.1 | 0.0 | 0.59 | 1.67 | 0.60 | 0.73 | 1.88 | 114280 | 14744 | 16 | 0 | 1416 | 0 | 0 | logfile |
✔ | 8C91 | 16498 | 2024-03-11 | 2023-01-21 | 4.19 | 4.74 | 4.70 | 4.2 | 0.001 | 0.36 | 0.0 | 0.03 | 22.46 | 0.00 | 1.896 | 5.51 | 0.07 | 3.8 | 96.1 | 0.2 | 0.39 | 0.84 | 0.79 | — | 4.2 | 0.005 | 0.71 | 0.0 | 0.04 | 24.09 | 0.01 | 1.946 | 33.40 | 0.00 | 10.5 | 89.4 | 0.1 | -2.06 | 0.97 | 0.86 | 0.85 | — | 59110 | 1860 | 18 | 2077 | 0 | 0 | 0 | logfile |
✔ | 6X35 | 22018 | 2024-03-11 | 2020-05-21 | 4.2 | 4.14 | — | 4.2 | 0.001 | 0.37 | 0.0 | 0.03 | 8.42 | 0.00 | 2.202 | 3.37 | 0.05 | 1.8 | 98.1 | 0.0 | -1.11 | 0.52 | 0.67 | — | 4.1 | 0.002 | 0.61 | 0.0 | 0.04 | 11.41 | 0.00 | 2.182 | 7.29 | 0.01 | 2.5 | 97.5 | 0.0 | 1.11 | 1.69 | 0.57 | 0.72 | — | 111888 | 14740 | 16 | 0 | 1432 | 0 | 0 | logfile |
✔ | 6NEQ | 9358 | 2024-03-13 | 2018-12-18 | 3.32 | 3.85 | — | 3.5 | 0.001 | 0.37 | 0.0 | 0.03 | 17.57 | 0.00 | 1.949 | 3.29 | 0.35 | 10.3 | 88.1 | 1.6 | -2.42 | 0.69 | 0.51 | 0.07 | 3.5 | 0.003 | 0.68 | 0.0 | 0.04 | 19.76 | 0.00 | 2.098 | 13.26 | 1.83 | 5.2 | 94.7 | 0.1 | -0.39 | 1.96 | 0.85 | 0.85 | 1.35 | 65776 | 5509 | 32 | 952 | 147 | 0 | 0 | logfile |
✔ | 6PCH | 20300 | 2024-03-16 | 2019-06-17 | 2.9 | 3.23 | — | 3.1 | 0.005 | 0.37 | 0.0 | 0.02 | 23.63 | 0.02 | 1.702 | 3.90 | 2.23 | 7.9 | 92.0 | 0.1 | -4.23 | 0.61 | 0.79 | 3.30 | 3.1 | 0.004 | 0.65 | 0.0 | 0.03 | 23.94 | 0.01 | 2.032 | 11.26 | 3.94 | 8.7 | 91.2 | 0.1 | -2.16 | 0.51 | 0.63 | 0.82 | 1.90 | 72134 | 964 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 8E42 | 27877 | 2024-03-12 | 2022-08-17 | 2.29 | 2.95 | 2.61 | 2.7 | 0.005 | 0.37 | 0.0 | 0.07 | 23.54 | 0.02 | 1.931 | 1.94 | 0.53 | 4.0 | 96.0 | 0.0 | 0.92 | 0.73 | 0.91 | 4.67 | 2.7 | 0.006 | 0.62 | 0.0 | 0.04 | 23.40 | 0.01 | 1.771 | 3.29 | 0.74 | 5.2 | 94.8 | 0.0 | 0.17 | 0.30 | 0.71 | 0.91 | 4.97 | 115718 | 1179 | 11 | 3016 | 2 | 0 | 41815 | logfile |
✔ | 8D9K | 27264 | 2024-03-10 | 2022-06-10 | 3.72 | 4.58 | 3.85 | 4.1 | 0.001 | 0.37 | 0.0 | 0.03 | 16.35 | 0.00 | 2.270 | 6.46 | 0.64 | 1.9 | 98.1 | 0.0 | 1.53 | 0.89 | 0.84 | 2.42 | 4.1 | 0.003 | 0.50 | 0.0 | 0.04 | 17.22 | 0.00 | 2.142 | 11.42 | 2.14 | 2.1 | 97.9 | 0.0 | 0.75 | 0.56 | 0.90 | 0.86 | 1.97 | 5708 | 546 | 3 | 65 | 0 | 0 | 0 | logfile |
✔ | 7TCP | 25816 | 2024-03-16 | 2021-12-27 | 3.84 | 3.97 | — | 3.9 | 0.002 | 0.37 | 0.0 | 0.03 | 9.57 | 0.00 | 2.327 | 4.21 | 1.26 | 2.8 | 97.2 | 0.0 | 2.66 | 0.70 | 0.81 | 2.29 | 3.9 | 0.006 | 0.60 | 0.0 | 0.04 | 12.89 | 0.00 | 2.125 | 6.46 | 2.46 | 4.0 | 96.0 | 0.0 | 1.96 | 0.27 | 0.71 | 0.83 | 2.42 | 14992 | 1912 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 7R9E | 24324 | 2024-03-11 | 2021-06-29 | 4.0 | 4.83 | — | 3.9 | 0.002 | 0.37 | 0.0 | 0.04 | 4.45 | 0.00 | 2.277 | 3.11 | 0.00 | 9.9 | 88.7 | 1.4 | -3.58 | 0.87 | 0.80 | — | 3.9 | 0.003 | 0.59 | 0.0 | 0.04 | 9.14 | 0.00 | 2.120 | 9.84 | 0.98 | 5.4 | 94.6 | 0.0 | -0.26 | 2.08 | 0.88 | 0.82 | — | 7726 | 505 | 1 | 0 | 0 | 0 | 3938 | logfile |
✔ | 7TJ2 | 25915 | 2024-03-17 | 2022-01-14 | 3.2 | 3.32 | — | 3.4 | 0.002 | 0.37 | 0.0 | 0.04 | 11.30 | 0.00 | 2.196 | 3.77 | 1.64 | 2.4 | 97.6 | 0.0 | 0.18 | 0.69 | 0.76 | 3.52 | 3.3 | 0.004 | 0.54 | 0.0 | 0.04 | 15.12 | 0.00 | 2.192 | 6.55 | 3.34 | 3.3 | 96.7 | 0.0 | -0.16 | 2.83 | 0.71 | 0.82 | 3.40 | 17083 | 2007 | 8 | 62 | 0 | 0 | 0 | logfile |
✔ | 8BEJ | 16005 | 2024-03-20 | 2022-10-21 | 3.24 | 3.94 | 3.38 | 3.7 | 0.002 | 0.37 | 0.0 | 0.04 | 6.96 | 0.00 | 2.170 | 2.39 | 0.00 | 2.1 | 97.9 | 0.0 | 1.70 | 0.73 | 0.84 | 4.62 | 3.7 | 0.004 | 0.52 | 0.0 | 0.04 | 11.60 | 0.00 | 1.975 | 4.97 | 0.07 | 2.8 | 97.2 | 0.0 | 1.34 | 0.94 | 0.73 | 0.85 | 4.08 | 27065 | 1680 | 10 | 0 | 5 | 0 | 13415 | logfile |