Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7R9M	24329	2022-05-12	2021-06-29	4.0	4.58	—	3.9	0.002	0.38	0.0	0.04	4.68	0.00	2.214	3.88	0.00	8.3	90.9	0.8	-4.83	0.85	0.77	—	3.9	0.002	0.55	0.0	0.04	9.36	0.00	2.104	9.58	0.00	3.4	96.6	0.0	-0.01	1.74	0.86	0.79	—	7727	505	1	0	0	0	3939	logfile
✔	7T4M	25680	2022-05-17	2021-12-10	2.48	2.77	2.55	2.7	0.001	0.38	0.0	0.04	9.69	0.00	2.253	4.91	0.97	1.6	98.4	0.0	1.34	0.72	0.86	4.48	2.7	0.003	0.50	0.0	0.04	12.95	0.00	2.169	5.73	0.69	1.4	98.6	0.0	1.55	0.90	0.73	0.88	3.98	39054	4854	12	0	0	0	0	logfile
✔	7oNL	12997	2022-05-13	2021-05-25	3.9	3.35	3.58	3.6	0.002	0.38	0.0	0.04	9.17	0.00	2.180	5.51	0.41	1.5	98.5	0.0	2.97	0.64	0.80	2.02	3.6	0.004	0.66	0.0	0.04	13.84	0.00	2.158	10.48	0.68	1.9	98.1	0.0	2.22	0.56	0.63	0.81	1.23	13923	1827	7	0	0	0	0	logfile
✔	7R9o	24330	2022-05-12	2021-06-29	4.0	4.66	—	4.0	0.002	0.38	0.0	0.04	4.49	0.00	2.252	2.85	0.25	10.5	88.7	0.8	-4.93	0.83	0.71	—	4.0	0.003	0.58	0.0	0.04	10.75	0.00	1.956	12.04	0.00	3.8	96.2	0.0	-0.37	3.44	0.88	0.83	—	7726	505	1	0	0	0	3938	logfile
✔	5ZBo	6746	2022-05-16	2018-02-12	4.12	4.69	—	4.8	0.001	0.38	0.0	0.04	15.92	0.00	2.148	1.93	0.49	11.1	86.2	2.7	-4.88	0.71	0.60	—	4.1	0.003	0.77	1.0	0.04	13.18	0.00	2.045	19.68	0.00	5.9	94.1	0.0	-2.25	2.94	0.74	0.79	—	89100	10860	60	0	0	0	0	logfile
✔	7TQV	26073	2022-05-14	2022-01-27	3.43	3.72	—	3.7	0.002	0.38	0.0	0.04	7.79	0.00	2.162	5.03	0.82	3.8	96.2	0.0	-0.34	0.68	0.69	2.18	3.6	0.003	0.58	0.0	0.04	12.75	0.00	2.161	8.45	0.33	3.7	96.3	0.0	-0.53	1.51	0.73	0.76	2.14	17792	2083	8	66	0	0	0	logfile
✔	6PCH	20300	2022-05-15	2019-06-17	2.9	3.23	—	3.1	0.005	0.38	0.0	0.02	12.69	0.02	1.702	3.92	2.23	7.9	92.0	0.1	-4.23	0.61	0.79	3.30	3.1	0.007	0.79	0.0	0.04	15.44	0.01	1.965	12.12	6.57	9.5	90.3	0.2	-2.30	0.50	0.63	0.83	2.23	72134	964	8	3015	1	0	0	logfile
✔	7JSE	22451	2022-05-13	2020-08-14	4.6	5.13	—	4.2	0.001	0.38	0.0	0.02	10.51	0.00	2.425	0.00	0.00	11.4	88.0	0.6	-2.68	0.79	0.50	—	3.8	0.005	0.96	0.0	0.08	14.35	0.00	2.201	6.17	0.00	15.6	84.4	0.0	-2.03	2.71	0.83	0.74	—	13288	3168	24	32	0	0	0	logfile
✔	6NF8	9362	2022-05-13	2018-12-19	3.48	3.99	—	3.6	0.001	0.39	0.0	0.03	12.76	0.00	1.916	3.14	0.58	10.4	88.3	1.3	-2.53	0.76	0.60	1.16	3.5	0.003	0.67	0.0	0.04	15.68	0.00	2.019	12.91	0.19	5.5	94.5	0.0	-0.34	2.59	0.84	0.79	1.23	65776	5509	32	952	147	0	0	logfile
✔	6KS8	0760	2022-05-13	2019-08-23	4.69	4.76	—	4.6	0.001	0.39	0.0	0.04	7.12	0.00	2.228	5.95	0.01	4.4	95.5	0.0	-3.61	0.77	0.67	—	4.6	0.003	0.69	0.0	0.04	11.61	0.00	2.100	15.65	0.01	3.0	97.0	0.0	-0.13	1.85	0.80	0.71	—	61943	8120	16	0	0	0	0	logfile
✔	6KS7	0759	2022-05-13	2019-08-23	4.62	4.57	—	4.5	0.001	0.39	0.0	0.04	7.11	0.00	2.241	5.80	0.00	4.3	95.7	0.0	-3.50	0.70	0.62	—	4.5	0.009	0.91	0.0	0.05	12.10	0.00	1.014	21.96	0.03	3.5	96.4	0.1	-0.25	1.82	0.74	0.68	—	62022	8131	16	0	0	0	0	logfile
✔	6KRE	0757	2022-05-13	2019-08-21	4.45	4.34	—	4.4	0.001	0.39	0.0	0.04	7.11	0.00	2.244	6.14	0.03	4.1	95.8	0.1	-3.50	0.61	0.56	—	4.4	0.004	0.75	1.0	0.04	12.02	0.00	2.101	12.70	0.05	3.2	96.8	0.1	0.24	1.77	0.65	0.62	—	60321	7922	16	0	0	0	0	logfile
✔	6KRD	0756	2022-05-13	2019-08-21	4.38	4.25	—	4.4	0.001	0.39	0.0	0.04	7.15	0.00	2.226	5.90	0.00	4.5	95.5	0.1	-3.58	0.57	0.52	—	4.3	0.008	0.86	1.0	0.05	11.99	0.00	1.822	15.52	0.01	3.3	96.6	0.1	-0.02	1.78	0.63	0.59	—	61005	8006	16	0	0	0	0	logfile
✔	7SAM	24952	2022-05-12	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	13.28	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.006	0.88	0.0	0.04	22.86	0.01	1.817	83.53	0.00	0.0	0.0	0.0	—	5.89	0.95	0.86	—	5399	0	1	169	0	0	1802	logfile
✔	6XGC	22180	2022-05-14	2020-06-17	4.1	4.25	—	4.2	0.001	0.39	0.0	0.04	7.78	0.00	2.215	5.92	0.16	2.3	97.7	0.0	1.43	0.80	0.81	—	4.2	0.006	0.76	0.0	0.05	11.55	0.00	2.105	14.11	0.00	5.4	94.6	0.0	-0.51	1.33	0.82	0.84	—	17040	2157	21	0	21	0	0	logfile
✔	7oZP	13131	2022-05-12	2021-06-28	3.8	4.17	3.83	4.0	0.002	0.39	0.0	0.04	14.04	0.00	1.969	4.78	0.00	2.1	97.9	0.0	1.24	0.79	0.71	0.86	4.0	0.009	0.95	2.0	0.05	16.67	0.01	1.544	21.89	0.20	3.3	96.7	0.0	0.24	0.93	0.83	0.78	1.28	54330	6774	32	0	10	0	0	logfile
✘	6XLH	22244	2022-05-13	2020-06-28	2.83	2.93	—	2.9	0.001	0.39	0.0	0.04	7.54	0.00	2.093	5.99	0.13	1.5	98.5	0.0	-3.84	0.73	0.80	3.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13608	1675	6	0	6	0	0	logfile
✔	7oZo	13130	2022-05-12	2021-06-28	3.8	4.06	3.82	3.9	0.002	0.39	0.0	0.04	14.07	0.00	1.993	4.68	0.00	2.1	97.9	0.0	1.21	0.79	0.71	0.70	3.9	0.004	0.73	0.0	0.05	16.76	0.01	2.113	15.84	0.38	3.6	96.4	0.0	-0.09	1.26	0.82	0.78	0.89	54330	6774	32	0	10	0	0	logfile
✔	7oo8	13007	2022-05-13	2021-05-26	3.7	2.99	3.39	3.0	0.003	0.40	0.0	0.04	9.89	0.00	2.286	6.45	0.00	1.9	98.1	0.0	2.79	0.65	0.79	2.44	3.0	0.003	0.48	0.0	0.04	14.96	0.00	2.291	10.06	0.27	1.2	98.8	0.0	2.49	0.46	0.65	0.79	2.25	13923	1827	7	0	0	0	0	logfile
✔	7EoS	31229	2022-05-15	2021-04-22	3.9	4.43	—	3.9	0.001	0.40	0.0	0.04	9.12	0.00	2.254	6.57	1.89	4.1	95.8	0.1	0.47	0.88	0.78	1.32	4.0	0.004	0.71	0.0	0.04	12.91	0.00	2.114	15.89	0.27	6.9	93.1	0.1	-0.55	2.28	0.91	0.83	1.42	24600	3106	8	0	18	0	0	logfile

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