Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6HD5	0201	2021-06-02	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.003	0.80	0.0	0.04	12.24	0.01	2.154	19.96	0.00	6.7	93.2	0.1	-0.57	2.17	0.45	0.52	—	9707	1234	3	0	0	0	0	logfile
✔	5ZBo	6746	2021-06-03	2018-02-12	4.12	4.69	—	4.8	0.002	0.40	0.0	0.04	15.92	0.00	2.148	1.93	0.49	11.1	86.2	2.7	-4.88	0.71	0.60	—	4.1	0.004	0.81	0.0	0.04	13.05	0.00	2.105	22.25	0.01	6.0	94.0	0.0	-2.33	3.06	0.73	0.78	—	89100	10860	60	0	0	0	0	logfile
✔	6W18	21503	2021-06-02	2020-03-03	4.2	4.20	4.18	4.2	0.002	0.41	0.0	0.04	11.01	0.00	2.196	4.67	0.00	3.0	97.0	0.0	-3.43	0.71	0.62	—	4.2	0.005	0.79	0.0	0.05	12.90	0.00	2.055	13.93	0.09	8.9	91.1	0.0	-1.99	1.61	0.78	0.72	—	13151	1837	9	0	3	0	0	logfile
✔	6X34	22017	2021-06-03	2020-05-21	4.7	6.14	4.99	4.8	0.001	0.41	0.0	0.03	9.38	0.00	2.258	3.73	0.61	1.6	98.4	0.0	-2.99	0.74	0.66	—	4.8	0.004	0.69	0.0	0.04	9.85	0.00	2.078	16.42	0.00	5.6	94.4	0.0	0.07	1.04	0.80	0.80	—	97888	13956	12	0	1320	0	0	logfile
✔	6WCB	21605	2021-06-02	2020-03-30	3.17	3.17	—	3.2	0.005	0.41	0.0	0.03	13.87	0.00	2.128	2.50	1.29	0.8	99.2	0.0	0.58	0.55	0.77	2.89	3.2	0.004	0.51	0.0	0.04	15.63	0.00	2.020	4.14	0.49	1.7	98.3	0.0	3.29	1.30	0.57	0.80	2.14	11647	734	6	0	7	40	5904	logfile
✔	6U5S	20654	2021-06-04	2019-08-28	3.07	3.44	—	3.4	0.003	0.41	0.0	0.07	12.04	0.00	2.078	5.93	0.00	3.3	96.7	0.0	-3.21	0.81	0.80	4.41	3.3	0.004	0.48	0.0	0.04	13.65	0.00	2.138	6.54	0.00	3.3	96.7	0.0	0.21	1.25	0.84	0.85	4.06	21461	1504	8	0	20	0	9755	logfile
✔	6ZGG	11205	2021-06-03	2020-06-18	3.8	4.33	4.00	4.0	0.001	0.41	0.0	0.04	5.80	0.00	2.231	3.79	1.00	12.4	87.1	0.5	-2.52	0.84	0.74	0.73	4.0	0.006	0.78	0.0	0.04	11.80	0.00	2.112	13.88	0.32	7.4	92.6	0.0	-1.05	1.48	0.87	0.84	1.38	25096	3207	3	0	0	0	0	logfile
✔	7B0Y	11972	2021-06-05	2020-11-23	3.6	3.87	3.41	3.7	0.002	0.42	0.0	0.04	15.19	0.00	1.954	4.27	0.02	2.1	97.9	0.0	-2.96	0.75	0.78	2.05	3.7	0.005	0.64	0.0	0.04	17.25	0.00	2.047	12.07	0.26	4.8	95.2	0.0	-0.23	1.25	0.77	0.80	1.79	43792	4745	31	274	9	0	0	logfile
✔	5GW4	9540	2021-06-06	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.48	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	4.8	0.003	0.77	0.0	0.05	12.02	0.00	1.919	15.73	0.06	3.9	96.0	0.1	0.23	3.45	0.74	0.60	—	64544	8446	16	0	0	0	0	logfile
✔	7JLX	22383	2021-06-01	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.003	0.75	0.0	0.04	6.71	0.00	2.307	8.03	0.00	15.2	84.8	0.0	-1.73	2.43	0.49	0.54	—	3288	664	4	0	0	0	0	logfile
✔	6QXF	4668	2021-06-04	2019-03-07	3.6	4.31	—	3.6	0.002	0.42	0.0	0.04	11.08	0.00	2.203	6.94	0.73	2.2	97.7	0.1	-1.19	0.90	0.86	1.38	3.6	0.003	0.61	0.0	0.04	13.82	0.00	2.091	11.75	0.03	2.5	97.4	0.1	1.68	2.80	0.89	0.86	1.54	34693	4088	30	50	8	0	0	logfile
✘	6PM5	20388	2021-06-02	2019-07-01	3.1	3.38	—	3.4	0.001	0.42	0.0	0.06	6.80	0.00	2.275	5.03	0.00	2.4	97.6	0.0	-4.42	0.52	0.78	3.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13975	1735	15	0	15	0	0	logfile
✘	6VLZ	21233	2021-06-07	2020-01-27	2.97	3.50	—	3.3	0.002	0.42	1.0	0.03	12.04	0.00	1.115	7.44	0.89	10.8	87.5	1.7	-2.83	0.70	0.61	1.27	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	174849	14904	107	2561	243	0	0	logfile
✔	7BL6	12219	2021-06-03	2021-01-18	4.0	7.11	—	4.0	0.002	0.42	0.0	0.03	13.17	0.00	2.117	10.91	0.07	4.7	95.3	0.1	-0.28	0.92	0.83	—	4.0	0.005	0.68	0.0	0.04	17.05	0.00	1.957	39.66	0.48	8.8	91.1	0.1	-1.53	3.14	0.93	0.85	—	92769	3600	42	3016	5	27	0	logfile
✔	6PLP	20371	2021-06-02	2019-07-01	3.3	3.51	—	3.8	0.001	0.43	0.0	0.04	7.21	0.00	2.285	5.97	0.00	2.0	98.0	0.0	-4.40	0.44	0.72	3.32	3.7	0.003	0.64	0.0	0.04	13.82	0.01	2.104	11.16	0.19	2.9	97.1	0.0	-0.87	0.81	0.51	0.80	3.02	14240	1730	15	0	20	0	0	logfile
✔	6PLQ	20372	2021-06-02	2019-07-01	3.4	4.30	—	4.3	0.001	0.43	0.0	0.04	7.21	0.00	2.285	5.97	0.00	2.0	98.0	0.0	-4.40	0.57	0.36	0.62	3.9	0.005	0.93	0.0	0.05	15.07	0.00	2.064	15.06	0.58	5.9	94.1	0.0	-1.61	2.46	0.76	0.85	2.50	14240	1730	15	0	20	0	0	logfile
✔	6NUD	0516	2021-06-03	2019-01-31	3.5	3.80	—	3.7	0.002	0.43	0.0	0.03	11.76	0.00	2.290	4.84	0.29	15.0	83.5	1.5	-5.22	0.53	0.46	0.65	3.7	0.004	0.79	0.0	0.04	17.12	0.01	2.069	12.31	0.29	8.8	91.2	0.0	-2.50	2.07	0.73	0.76	1.74	20831	2420	13	68	1	0	0	logfile
✔	6HD7	0202	2021-06-02	2018-08-17	3.4	3.54	—	3.3	0.002	0.43	0.0	0.05	14.93	0.00	0.345	24.87	0.08	11.1	87.1	1.9	-3.26	0.66	0.65	0.74	3.3	0.009	0.84	1.0	0.05	18.01	0.01	1.932	20.04	1.23	7.8	91.8	0.4	-1.38	1.61	0.76	0.87	1.72	141153	7514	52	3767	234	0	0	logfile
✔	5WVK	6694	2021-06-04	2016-12-25	4.2	4.73	—	4.3	0.002	0.43	0.0	0.04	7.38	0.00	2.151	7.46	0.01	6.6	93.3	0.2	-3.70	0.84	0.75	—	4.3	0.003	0.74	0.0	0.04	12.19	0.00	2.054	19.90	0.01	5.2	94.6	0.2	-0.77	2.37	0.87	0.78	—	105261	13392	47	0	0	0	0	logfile
✔	6TFJ	10492	2021-06-05	2019-11-14	2.9	3.01	2.90	3.0	0.002	0.43	0.0	0.04	9.89	0.00	2.013	6.70	0.11	8.4	91.6	0.0	-2.53	0.70	0.73	2.51	3.0	0.004	0.59	0.0	0.04	15.40	0.00	1.961	10.49	1.79	7.3	92.7	0.1	-0.75	1.35	0.72	0.78	2.18	48340	3058	4	0	0	0	24098	logfile

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