Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6KRD	0756	2021-09-03	2019-08-21	4.38	4.25	—	4.4	0.001	0.39	0.0	0.04	7.15	0.00	2.226	5.79	0.00	4.5	95.5	0.1	-3.58	0.57	0.52	—	4.3	0.007	0.86	0.0	0.05	12.44	0.00	1.612	18.12	0.01	4.6	95.4	0.1	-0.48	3.26	0.65	0.66	—	61005	8006	16	0	0	0	0	logfile
✔	6XLH	22244	2021-09-03	2020-06-28	2.83	2.93	—	2.9	0.001	0.39	0.0	0.04	7.54	0.00	2.093	5.96	0.13	1.5	98.5	0.0	-3.84	0.73	0.80	3.26	2.9	0.003	0.61	0.0	0.04	16.61	0.00	1.978	9.15	2.47	3.0	97.0	0.0	-0.65	1.47	0.77	0.87	3.78	13608	1675	6	0	6	0	0	logfile
✔	6KS8	0760	2021-09-03	2019-08-23	4.69	4.76	—	4.6	0.001	0.39	0.0	0.04	7.12	0.00	2.228	5.83	0.01	4.4	95.5	0.0	-3.61	0.77	0.67	—	4.6	0.003	0.73	0.0	0.04	11.67	0.00	2.099	18.19	0.06	3.7	96.3	0.0	-0.31	1.99	0.82	0.73	—	61943	8120	16	0	0	0	0	logfile
✔	6KRE	0757	2021-09-03	2019-08-21	4.45	4.34	—	4.4	0.001	0.39	0.0	0.04	7.11	0.00	2.244	6.03	0.03	4.1	95.8	0.1	-3.50	0.61	0.56	—	4.4	0.006	0.84	0.0	0.05	12.27	0.00	1.505	17.91	0.02	4.0	95.9	0.1	0.05	1.88	0.68	0.66	—	60321	7922	16	0	0	0	0	logfile
✔	6NF8	9362	2021-09-03	2018-12-19	3.48	3.99	—	3.6	0.001	0.39	0.0	0.03	12.76	0.00	1.916	3.03	0.58	10.4	88.3	1.3	-2.53	0.76	0.60	1.16	3.5	0.005	0.76	1.0	0.04	16.04	0.01	1.563	15.31	0.17	6.1	93.9	0.0	-0.47	3.21	0.84	0.80	1.25	65776	5509	32	952	147	0	0	logfile
✔	6XGC	22180	2021-09-03	2020-06-17	4.1	4.25	—	4.2	0.001	0.39	0.0	0.04	7.78	0.00	2.215	5.83	0.16	2.3	97.7	0.0	1.43	0.80	0.81	—	4.2	0.004	0.68	0.0	0.04	11.59	0.00	2.197	11.78	0.05	3.5	96.5	0.0	0.01	1.34	0.82	0.83	—	17040	2157	21	0	21	0	0	logfile
✔	6HD5	0201	2021-09-03	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.003	0.76	0.0	0.04	12.33	0.00	2.149	16.76	0.00	5.8	94.1	0.1	-0.19	2.13	0.45	0.51	—	9707	1234	3	0	0	0	0	logfile
✔	5ZBo	6746	2021-09-06	2018-02-12	4.12	4.69	—	4.8	0.002	0.40	0.0	0.04	15.92	0.00	2.148	1.93	0.49	11.1	86.2	2.7	-4.88	0.71	0.60	—	4.1	0.004	0.77	0.0	0.04	12.99	0.00	2.167	20.30	0.00	6.0	94.0	0.0	-2.25	3.01	0.74	0.80	—	89100	10860	60	0	0	0	0	logfile
✔	6J2X	9772	2021-09-02	2019-01-03	3.8	3.99	—	3.9	0.002	0.40	0.0	0.04	7.12	0.00	2.220	6.60	0.00	5.8	94.1	0.1	-3.52	0.80	0.70	0.49	3.9	0.004	0.82	0.0	0.04	15.43	0.00	2.046	16.79	0.40	4.4	95.4	0.1	-0.72	1.92	0.84	0.77	0.98	106176	13501	47	0	0	0	0	logfile
✔	6J2Q	9771	2021-09-02	2019-01-02	3.8	3.95	—	3.9	0.002	0.40	0.0	0.04	7.17	0.00	2.202	6.51	0.00	5.5	94.4	0.1	-3.50	0.77	0.68	0.88	3.9	0.007	0.86	2.0	0.04	15.56	0.00	1.641	24.13	0.43	4.0	95.8	0.2	-0.63	2.30	0.83	0.76	0.98	106311	13518	47	0	0	0	0	logfile
✔	7oDS	12846	2021-09-02	2021-04-30	3.1	3.32	—	3.1	0.002	0.40	0.0	0.03	11.15	0.02	2.009	5.00	0.51	1.2	98.8	0.0	0.91	0.78	0.76	2.42	3.1	0.005	0.77	0.0	0.04	14.89	0.01	1.469	12.32	0.12	3.1	96.9	0.0	0.58	1.70	0.79	0.79	2.14	108339	9371	67	1487	132	0	0	logfile
✔	7EoS	31229	2021-09-04	2021-04-22	3.9	4.43	—	3.9	0.001	0.40	0.0	0.04	9.12	0.00	2.254	6.51	1.89	4.1	95.8	0.1	0.47	0.88	0.78	1.32	4.0	0.003	0.67	0.0	0.04	12.78	0.00	2.091	14.40	0.11	6.7	93.3	0.1	-0.45	1.72	0.90	0.83	1.39	24600	3106	8	0	18	0	0	logfile
✔	6ZGG	11205	2021-09-04	2020-06-18	3.8	4.33	4.00	4.0	0.001	0.41	0.0	0.04	5.80	0.00	2.231	3.79	1.00	12.4	87.1	0.5	-2.52	0.84	0.74	0.73	4.0	0.004	0.70	0.0	0.04	11.49	0.00	2.135	10.33	0.25	5.2	94.8	0.0	-0.79	1.45	0.87	0.83	1.21	25096	3207	3	0	0	0	0	logfile
✔	6W18	21503	2021-09-03	2020-03-03	4.2	4.20	4.18	4.2	0.002	0.41	0.0	0.04	11.01	0.00	2.196	4.67	0.00	3.0	97.0	0.0	-3.43	0.71	0.62	—	4.2	0.002	0.68	0.0	0.04	12.68	0.00	2.168	8.57	0.09	6.3	93.7	0.0	-1.40	1.30	0.76	0.70	—	13151	1837	9	0	3	0	0	logfile
✔	7A4G	11632	2021-09-08	2020-08-19	4.2	4.25	4.16	4.2	0.002	0.41	0.0	0.04	9.74	0.00	2.229	6.20	1.14	2.3	97.7	0.0	2.89	0.72	0.78	—	4.2	0.003	0.64	0.0	0.05	13.52	0.00	2.156	10.43	0.02	3.0	97.0	0.0	1.54	2.20	0.73	0.80	—	205680	27120	180	0	0	0	0	logfile
✔	7oDR	12845	2021-09-02	2021-04-30	2.9	3.11	—	3.0	0.002	0.41	0.0	0.03	11.10	0.02	1.963	4.94	0.44	1.1	98.9	0.0	0.96	0.74	0.80	3.31	3.0	0.009	0.86	1.0	0.04	15.32	0.01	1.739	10.95	2.12	2.2	97.8	0.0	0.83	1.26	0.76	0.84	2.67	107464	9244	68	1489	135	0	0	logfile
✔	7oDT	12847	2021-09-03	2021-04-30	3.1	3.31	—	3.1	0.002	0.41	0.0	0.03	10.97	0.01	1.988	5.24	0.53	1.2	98.8	0.0	1.05	0.77	0.79	2.84	3.1	0.008	0.80	2.0	0.04	15.01	0.01	1.540	12.71	0.19	3.6	96.4	0.0	0.23	0.75	0.78	0.82	2.48	110473	9585	71	1526	110	0	0	logfile
✔	7EU8	31309	2021-09-04	2021-05-16	4.07	4.11	—	3.6	0.002	0.41	0.0	0.04	8.07	0.00	2.206	3.13	3.51	2.0	97.9	0.1	1.10	0.75	0.61	—	3.4	0.009	0.91	1.0	0.05	9.13	0.00	2.103	9.33	0.00	4.1	95.7	0.2	-0.38	1.44	0.79	0.70	—	18670	3010	8	0	8	0	0	logfile
✔	6WCB	21605	2021-09-03	2020-03-30	3.17	3.17	—	3.2	0.005	0.41	0.0	0.03	13.87	0.00	2.128	2.50	1.29	0.8	99.2	0.0	0.58	0.55	0.77	2.89	3.2	0.002	0.47	0.0	0.03	15.68	0.00	2.040	3.62	0.00	1.5	98.5	0.0	3.79	1.32	0.56	0.79	2.12	11647	734	6	0	7	40	5904	logfile
✔	6U5S	20654	2021-09-05	2019-08-28	3.07	3.44	—	3.4	0.003	0.41	0.0	0.07	12.04	0.00	2.078	5.93	0.00	3.3	96.7	0.0	-3.21	0.81	0.80	4.41	3.3	0.003	0.48	0.0	0.04	13.66	0.00	2.129	6.89	0.00	3.4	96.6	0.0	0.18	1.25	0.84	0.85	4.11	21461	1504	8	0	20	0	9755	logfile

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