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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7R9E | 24324 | 2023-02-18 | 2021-06-29 | 4.0 | 4.83 | — | 3.9 | 0.002 | 0.37 | 0.0 | 0.04 | 4.45 | 0.00 | 2.277 | 3.11 | 0.00 | 9.9 | 88.7 | 1.4 | -3.58 | 0.87 | 0.80 | — | 3.9 | 0.002 | 0.56 | 0.0 | 0.04 | 9.08 | 0.00 | 2.177 | 7.90 | 0.00 | 5.0 | 95.0 | 0.0 | 0.09 | 1.76 | 0.88 | 0.82 | — | 7726 | 505 | 1 | 0 | 0 | 0 | 3938 | logfile |
✔ | 7TCP | 25816 | 2023-02-21 | 2021-12-27 | 3.84 | 3.97 | — | 3.9 | 0.002 | 0.37 | 0.0 | 0.03 | 9.57 | 0.00 | 2.327 | 4.11 | 1.26 | 2.8 | 97.2 | 0.0 | 2.66 | 0.70 | 0.81 | 2.29 | 3.9 | 0.003 | 0.50 | 0.0 | 0.04 | 12.75 | 0.00 | 2.113 | 5.25 | 0.60 | 3.3 | 96.7 | 0.0 | 2.51 | 0.36 | 0.71 | 0.83 | 2.44 | 14992 | 1912 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 7oNL | 12997 | 2023-02-21 | 2021-05-25 | 3.9 | 3.35 | 3.58 | 3.6 | 0.002 | 0.38 | 0.0 | 0.04 | 9.17 | 0.00 | 2.180 | 5.51 | 0.41 | 1.5 | 98.5 | 0.0 | 2.97 | 0.64 | 0.80 | 2.02 | 3.6 | 0.003 | 0.63 | 0.0 | 0.04 | 13.87 | 0.00 | 2.200 | 9.71 | 0.74 | 1.4 | 98.6 | 0.0 | 2.16 | 0.57 | 0.64 | 0.81 | 1.09 | 13923 | 1827 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JSE | 22451 | 2023-02-20 | 2020-08-14 | 4.6 | 5.13 | — | 4.2 | 0.001 | 0.38 | 0.0 | 0.02 | 10.51 | 0.00 | 2.425 | 0.00 | 0.00 | 11.4 | 88.0 | 0.6 | -2.68 | 0.79 | 0.50 | — | 3.8 | 0.006 | 1.04 | 0.0 | 0.08 | 14.36 | 0.00 | 2.181 | 8.70 | 0.00 | 15.8 | 84.2 | 0.0 | -2.47 | 2.74 | 0.84 | 0.74 | — | 13288 | 3168 | 24 | 32 | 0 | 0 | 0 | logfile |
✔ | 7R9M | 24329 | 2023-02-18 | 2021-06-29 | 4.0 | 4.58 | — | 3.9 | 0.002 | 0.38 | 0.0 | 0.04 | 4.68 | 0.00 | 2.214 | 3.88 | 0.00 | 8.3 | 90.9 | 0.8 | -4.83 | 0.85 | 0.77 | — | 3.9 | 0.002 | 0.54 | 0.0 | 0.04 | 9.14 | 0.00 | 2.110 | 9.06 | 0.00 | 2.6 | 97.4 | 0.0 | -0.08 | 1.73 | 0.86 | 0.79 | — | 7727 | 505 | 1 | 0 | 0 | 0 | 3939 | logfile |
✔ | 7SQV | 25396 | 2023-02-17 | 2021-11-06 | 2.3 | 2.95 | 2.29 | 2.8 | 0.001 | 0.38 | 0.0 | 0.04 | 16.08 | 0.00 | 2.314 | 1.47 | 0.63 | 0.7 | 99.3 | 0.0 | 1.86 | 0.76 | 0.88 | 3.59 | 2.8 | 0.003 | 0.47 | 0.0 | 0.04 | 16.30 | 0.00 | 2.295 | 1.36 | 1.67 | 1.1 | 98.9 | 0.0 | 1.71 | 1.99 | 0.77 | 0.90 | 3.84 | 4471 | 573 | 5 | 0 | 0 | 7 | 0 | logfile |
✘ | 7VF9 | 31948 | 2023-02-25 | 2021-09-10 | 4.04 | 4.13 | — | 4.1 | 0.001 | 0.38 | 0.0 | 0.04 | 9.65 | 0.00 | 2.176 | 3.71 | 0.05 | 1.5 | 98.5 | 0.0 | -4.44 | 0.74 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24247 | 3425 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 7Xo2 | 33334 | 2023-02-16 | 2022-04-30 | 3.0 | 2.83 | 2.60 | 2.9 | 0.001 | 0.38 | 0.0 | 0.05 | 18.12 | 0.00 | 2.586 | 6.10 | 0.00 | 5.0 | 95.0 | 0.0 | -0.89 | 0.49 | 0.87 | 6.67 | 2.9 | 0.005 | 0.60 | 0.0 | 0.05 | 19.10 | 0.00 | 2.290 | 4.76 | 3.88 | 7.2 | 92.8 | 0.0 | -1.69 | 2.16 | 0.49 | 0.88 | 6.49 | 2550 | 372 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7R9o | 24330 | 2023-02-18 | 2021-06-29 | 4.0 | 4.66 | — | 4.0 | 0.002 | 0.38 | 0.0 | 0.04 | 4.49 | 0.00 | 2.252 | 2.85 | 0.25 | 10.5 | 88.7 | 0.8 | -4.93 | 0.83 | 0.71 | — | 4.0 | 0.003 | 0.60 | 0.0 | 0.04 | 11.04 | 0.00 | 1.937 | 11.65 | 0.00 | 4.2 | 95.8 | 0.0 | -0.51 | 3.45 | 0.88 | 0.83 | — | 7726 | 505 | 1 | 0 | 0 | 0 | 3938 | logfile |
✔ | 7TQV | 26073 | 2023-02-22 | 2022-01-27 | 3.43 | 3.72 | — | 3.7 | 0.002 | 0.38 | 0.0 | 0.04 | 7.79 | 0.00 | 2.162 | 5.00 | 0.82 | 3.8 | 96.2 | 0.0 | -0.34 | 0.68 | 0.69 | 2.18 | 3.6 | 0.003 | 0.56 | 0.0 | 0.04 | 12.72 | 0.00 | 2.213 | 8.13 | 0.33 | 3.7 | 96.3 | 0.0 | -0.50 | 1.51 | 0.73 | 0.76 | 2.12 | 17792 | 2083 | 8 | 66 | 0 | 0 | 0 | logfile |
✔ | 8AP8 | 15561 | 2023-02-20 | 2022-08-09 | 3.7 | 3.98 | 3.47 | 3.8 | 0.002 | 0.39 | 0.0 | 0.04 | 8.11 | 0.00 | 2.139 | 2.40 | 0.31 | 1.6 | 98.4 | 0.0 | 2.44 | 0.72 | 0.82 | 1.61 | 3.8 | 0.003 | 0.51 | 0.0 | 0.04 | 13.75 | 0.00 | 2.107 | 5.71 | 0.78 | 3.4 | 96.6 | 0.0 | 2.09 | 1.18 | 0.73 | 0.84 | 1.53 | 12083 | 767 | 5 | 0 | 0 | 0 | 6098 | logfile |
✔ | 6NF8 | 9362 | 2023-02-24 | 2018-12-19 | 3.48 | 3.99 | — | 3.6 | 0.001 | 0.39 | 0.0 | 0.03 | 12.76 | 0.00 | 1.916 | 3.07 | 0.58 | 10.4 | 88.3 | 1.3 | -2.53 | 0.76 | 0.60 | 1.16 | 3.5 | 0.004 | 0.69 | 0.0 | 0.04 | 15.87 | 0.00 | 2.020 | 14.69 | 0.52 | 6.3 | 93.7 | 0.0 | -0.36 | 2.60 | 0.84 | 0.80 | 1.20 | 65776 | 5509 | 32 | 952 | 147 | 0 | 0 | logfile |
✔ | 7MVY | 24058 | 2023-02-25 | 2021-05-15 | 2.39 | 3.24 | 1.97 | 3.1 | 0.002 | 0.39 | 0.0 | 0.03 | 6.61 | 0.00 | 2.209 | 3.28 | 0.00 | 0.7 | 99.3 | 0.0 | -0.54 | 0.72 | 0.64 | 0.92 | 3.0 | 0.004 | 0.62 | 0.0 | 0.04 | 14.21 | 0.00 | 1.966 | 12.50 | 1.86 | 4.0 | 96.0 | 0.0 | 1.26 | 1.65 | 0.76 | 0.75 | 2.15 | 26555 | 1694 | 2 | 0 | 0 | 0 | 13337 | logfile |
✔ | 7oZo | 13130 | 2023-02-21 | 2021-06-28 | 3.8 | 4.06 | 3.82 | 3.9 | 0.002 | 0.39 | 0.0 | 0.04 | 14.07 | 0.00 | 1.993 | 4.62 | 0.00 | 2.1 | 97.9 | 0.0 | 1.21 | 0.79 | 0.71 | 0.70 | 3.9 | 0.004 | 0.73 | 0.0 | 0.05 | 16.69 | 0.00 | 2.132 | 16.59 | 0.40 | 3.6 | 96.4 | 0.0 | -0.29 | 1.27 | 0.82 | 0.78 | 0.99 | 54330 | 6774 | 32 | 0 | 10 | 0 | 0 | logfile |
✔ | 6KRE | 0757 | 2023-02-23 | 2019-08-21 | 4.45 | 4.34 | — | 4.4 | 0.001 | 0.39 | 0.0 | 0.04 | 7.11 | 0.00 | 2.244 | 6.04 | 0.03 | 4.1 | 95.8 | 0.1 | -3.50 | 0.61 | 0.56 | — | 4.4 | 0.003 | 0.68 | 0.0 | 0.04 | 11.97 | 0.00 | 2.090 | 13.70 | 0.03 | 3.5 | 96.4 | 0.1 | 0.20 | 1.80 | 0.67 | 0.64 | — | 60321 | 7922 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SAM | 24952 | 2023-02-17 | 2021-09-22 | 4.3 | 6.95 | 4.38 | 4.2 | 0.001 | 0.39 | 0.0 | 0.02 | 13.28 | 0.00 | 1.952 | 2.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.84 | 0.51 | — | 4.3 | 0.007 | 0.88 | 0.0 | 0.04 | 22.84 | 0.01 | 1.820 | 82.61 | 0.00 | 0.0 | 0.0 | 0.0 | — | 5.78 | 0.96 | 0.87 | — | 5399 | 0 | 1 | 169 | 0 | 0 | 1802 | logfile |
✔ | 6XLH | 22244 | 2023-02-21 | 2020-06-28 | 2.83 | 2.93 | — | 2.9 | 0.001 | 0.39 | 0.0 | 0.04 | 7.54 | 0.00 | 2.093 | 5.99 | 0.13 | 1.5 | 98.5 | 0.0 | -3.84 | 0.73 | 0.80 | 3.26 | 2.9 | 0.004 | 0.62 | 0.0 | 0.04 | 16.39 | 0.00 | 1.913 | 9.37 | 1.67 | 3.1 | 96.9 | 0.0 | -0.57 | 0.88 | 0.77 | 0.88 | 3.86 | 13608 | 1675 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7Xo0 | 33332 | 2023-02-16 | 2022-04-30 | 3.0 | 2.48 | 1.85 | 3.1 | 0.001 | 0.39 | 0.0 | 0.05 | 16.62 | 0.00 | 2.280 | 4.76 | 0.00 | 5.0 | 95.0 | 0.0 | -2.66 | 0.47 | 0.87 | 7.11 | 3.1 | 0.003 | 0.43 | 0.0 | 0.05 | 17.01 | 0.00 | 2.241 | 5.71 | 1.94 | 5.8 | 94.2 | 0.0 | -2.86 | 0.38 | 0.47 | 0.87 | 6.51 | 2550 | 372 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7XL3 | 33271 | 2023-02-25 | 2022-04-21 | 3.13 | 3.20 | — | 3.2 | 0.002 | 0.39 | 0.0 | 0.04 | 12.03 | 0.00 | 2.263 | 4.77 | 1.08 | 2.9 | 97.1 | 0.0 | -4.73 | 0.73 | 0.79 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25700 | 3480 | 8 | 0 | 3 | 0 | 0 | logfile |
✔ | 6XGC | 22180 | 2023-02-22 | 2020-06-17 | 4.1 | 4.25 | — | 4.2 | 0.001 | 0.39 | 0.0 | 0.04 | 7.78 | 0.00 | 2.215 | 5.83 | 0.16 | 2.3 | 97.7 | 0.0 | 1.43 | 0.80 | 0.81 | — | 4.2 | 0.003 | 0.68 | 0.0 | 0.04 | 11.21 | 0.00 | 2.210 | 11.27 | 0.00 | 3.3 | 96.7 | 0.0 | -0.05 | 1.32 | 0.81 | 0.83 | — | 17040 | 2157 | 21 | 0 | 21 | 0 | 0 | logfile |