Table showing results for July 2022

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MVU	24056	2022-07-05	2021-05-15	3.77	4.87	3.73	4.0	0.002	0.36	0.0	0.03	6.38	0.00	2.187	3.55	0.00	1.1	98.9	0.0	-0.33	0.85	0.73	0.19	4.0	0.002	0.58	0.0	0.03	11.75	0.00	1.907	11.81	0.07	3.4	96.6	0.0	2.54	2.06	0.88	0.82	0.38	25645	1604	2	0	0	0	12841	logfile
✘	6X32	22015	2022-07-04	2020-05-21	3.8	3.75	—	3.9	0.001	0.36	0.0	0.03	7.99	0.00	2.266	3.35	0.00	1.4	98.6	0.0	-3.72	0.56	0.69	2.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	114280	14744	16	0	1416	0	0	logfile
✘	6PC7	20298	2022-07-04	2019-06-16	2.5	3.01	—	2.9	0.003	0.36	0.0	0.03	12.58	0.00	1.214	2.86	2.23	6.2	93.7	0.1	-3.93	0.66	0.85	3.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72146	964	8	3015	1	0	0	logfile
✔	6X35	22018	2022-07-03	2020-05-21	4.2	4.14	—	4.2	0.001	0.37	0.0	0.03	8.42	0.00	2.202	3.52	0.05	1.8	98.1	0.0	-1.11	0.52	0.67	—	4.1	0.008	0.82	1.0	0.04	11.45	0.01	1.758	11.06	0.00	3.5	96.5	0.0	0.74	1.68	0.58	0.73	—	111888	14740	16	0	1432	0	0	logfile
✔	6X33	22016	2022-07-04	2020-05-21	4.2	4.35	—	4.3	0.001	0.37	0.0	0.03	9.39	0.00	2.304	3.34	0.00	1.9	98.1	0.0	-4.22	0.55	0.69	—	4.3	0.004	0.70	0.0	0.04	11.86	0.00	2.017	10.82	0.09	4.4	95.6	0.0	-0.11	0.68	0.59	0.74	—	112372	14796	16	0	1436	0	0	logfile
✔	6NEQ	9358	2022-07-04	2018-12-18	3.32	3.85	—	3.5	0.001	0.37	0.0	0.03	12.81	0.00	1.949	3.35	0.35	10.3	88.1	1.6	-2.42	0.69	0.51	0.07	3.5	0.004	0.68	0.0	0.04	16.24	0.01	2.099	13.08	0.35	5.3	94.6	0.1	-0.32	1.93	0.84	0.84	1.44	65776	5509	32	952	147	0	0	logfile
✘	6PCR	20305	2022-07-04	2019-06-18	2.5	3.04	—	2.9	0.003	0.37	0.0	0.03	12.62	0.00	1.214	2.73	2.36	5.2	94.6	0.2	-3.36	0.72	0.89	4.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72166	967	8	3015	1	0	0	logfile
✔	7R9E	24324	2022-07-03	2021-06-29	4.0	4.83	—	3.9	0.002	0.37	0.0	0.04	4.45	0.00	2.277	3.11	0.00	9.9	88.7	1.4	-3.58	0.87	0.80	—	3.9	0.002	0.58	0.0	0.04	9.06	0.00	2.156	9.58	0.00	5.2	94.8	0.0	0.03	2.07	0.88	0.82	—	7726	505	1	0	0	0	3938	logfile
✔	7TJ2	25915	2022-07-04	2022-01-14	3.2	3.32	—	3.4	0.002	0.37	0.0	0.04	8.62	0.00	2.196	3.77	1.64	2.4	97.6	0.0	0.18	0.69	0.76	3.52	3.3	0.005	0.59	0.0	0.04	13.55	0.00	2.183	6.46	0.28	3.4	96.6	0.0	-0.19	2.83	0.71	0.82	3.48	17083	2007	8	62	0	0	0	logfile
✔	7VX9	32172	2022-07-07	2021-11-12	4.0	4.30	—	4.2	0.002	0.37	0.0	0.04	7.20	0.00	2.022	12.55	0.00	4.1	95.8	0.1	-2.09	0.63	0.59	—	4.1	0.003	0.64	0.0	0.04	14.40	0.00	1.913	37.97	0.48	3.9	96.0	0.2	-0.67	1.39	0.67	0.72	—	46098	3789	4	0	0	0	16250	logfile
✘	6PCT	20307	2022-07-04	2019-06-18	2.8	3.01	—	2.9	0.003	0.37	2.0	0.03	12.58	0.00	1.213	2.99	2.50	6.3	93.6	0.1	-3.70	0.66	0.85	4.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72198	964	8	3015	1	0	0	logfile
✔	7JSE	22451	2022-07-03	2020-08-14	4.6	5.13	—	4.2	0.001	0.38	0.0	0.02	10.51	0.00	2.425	0.00	0.00	11.4	88.0	0.6	-2.68	0.79	0.50	—	3.8	0.005	0.96	0.0	0.08	14.35	0.00	2.201	6.17	0.00	15.6	84.4	0.0	-2.03	2.71	0.83	0.74	—	13288	3168	24	32	0	0	0	logfile
✔	7oNL	12997	2022-07-04	2021-05-25	3.9	3.35	3.58	3.6	0.002	0.38	0.0	0.04	9.17	0.00	2.180	5.51	0.41	1.5	98.5	0.0	2.97	0.64	0.80	2.02	3.6	0.004	0.66	0.0	0.04	13.84	0.00	2.158	10.48	0.68	1.9	98.1	0.0	2.22	0.56	0.63	0.81	1.23	13923	1827	7	0	0	0	0	logfile
✔	7TQV	26073	2022-07-04	2022-01-27	3.43	3.72	—	3.7	0.002	0.38	0.0	0.04	7.79	0.00	2.162	5.03	0.82	3.8	96.2	0.0	-0.34	0.68	0.69	2.18	3.6	0.003	0.58	0.0	0.04	12.75	0.00	2.161	8.45	0.33	3.7	96.3	0.0	-0.53	1.51	0.73	0.76	2.14	17792	2083	8	66	0	0	0	logfile
✔	5ZBo	6746	2022-07-05	2018-02-12	4.12	4.69	—	4.8	0.001	0.38	0.0	0.04	15.92	0.00	2.148	1.93	0.49	11.1	86.2	2.7	-4.88	0.71	0.60	—	4.1	0.003	0.77	1.0	0.04	13.18	0.00	2.045	19.68	0.00	5.9	94.1	0.0	-2.25	2.94	0.74	0.79	—	89100	10860	60	0	0	0	0	logfile
✔	7R9o	24330	2022-07-03	2021-06-29	4.0	4.66	—	4.0	0.002	0.38	0.0	0.04	4.49	0.00	2.252	2.85	0.25	10.5	88.7	0.8	-4.93	0.83	0.71	—	4.0	0.003	0.58	0.0	0.04	10.75	0.00	1.956	12.04	0.00	3.8	96.2	0.0	-0.37	3.44	0.88	0.83	—	7726	505	1	0	0	0	3938	logfile
✔	7T4M	25680	2022-07-07	2021-12-10	2.48	2.77	2.55	2.7	0.001	0.38	0.0	0.04	9.69	0.00	2.253	4.91	0.97	1.6	98.4	0.0	1.34	0.72	0.86	4.48	2.7	0.003	0.50	0.0	0.04	12.95	0.00	2.169	5.73	0.69	1.4	98.6	0.0	1.55	0.90	0.73	0.88	3.98	39054	4854	12	0	0	0	0	logfile
✔	7R9M	24329	2022-07-03	2021-06-29	4.0	4.58	—	3.9	0.002	0.38	0.0	0.04	4.68	0.00	2.214	3.88	0.00	8.3	90.9	0.8	-4.83	0.85	0.77	—	3.9	0.002	0.55	0.0	0.04	9.36	0.00	2.104	9.58	0.00	3.4	96.6	0.0	-0.01	1.74	0.86	0.79	—	7727	505	1	0	0	0	3939	logfile
✔	6NF8	9362	2022-07-04	2018-12-19	3.48	3.99	—	3.6	0.001	0.39	0.0	0.03	12.76	0.00	1.916	3.14	0.58	10.4	88.3	1.3	-2.53	0.76	0.60	1.16	3.5	0.003	0.67	0.0	0.04	15.68	0.00	2.019	12.91	0.19	5.5	94.5	0.0	-0.34	2.59	0.84	0.79	1.23	65776	5509	32	952	147	0	0	logfile
✔	6XGC	22180	2022-07-04	2020-06-17	4.1	4.25	—	4.2	0.001	0.39	0.0	0.04	7.78	0.00	2.215	5.92	0.16	2.3	97.7	0.0	1.43	0.80	0.81	—	4.2	0.006	0.76	0.0	0.05	11.55	0.00	2.105	14.11	0.00	5.4	94.6	0.0	-0.51	1.33	0.82	0.84	—	17040	2157	21	0	21	0	0	logfile

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