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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7R9M | 24329 | 2022-05-12 | 2021-06-29 | 4.0 | 4.58 | — | 3.9 | 0.002 | 0.38 | 0.0 | 0.04 | 4.68 | 0.00 | 2.214 | 3.88 | 0.00 | 8.3 | 90.9 | 0.8 | -4.83 | 0.85 | 0.77 | — | 3.9 | 0.002 | 0.55 | 0.0 | 0.04 | 9.36 | 0.00 | 2.104 | 9.58 | 0.00 | 3.4 | 96.6 | 0.0 | -0.01 | 1.74 | 0.86 | 0.79 | — | 7727 | 505 | 1 | 0 | 0 | 0 | 3939 | logfile |
✔ | 7T4M | 25680 | 2022-05-17 | 2021-12-10 | 2.48 | 2.77 | 2.55 | 2.7 | 0.001 | 0.38 | 0.0 | 0.04 | 9.69 | 0.00 | 2.253 | 4.91 | 0.97 | 1.6 | 98.4 | 0.0 | 1.34 | 0.72 | 0.86 | 4.48 | 2.7 | 0.003 | 0.50 | 0.0 | 0.04 | 12.95 | 0.00 | 2.169 | 5.73 | 0.69 | 1.4 | 98.6 | 0.0 | 1.55 | 0.90 | 0.73 | 0.88 | 3.98 | 39054 | 4854 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oNL | 12997 | 2022-05-13 | 2021-05-25 | 3.9 | 3.35 | 3.58 | 3.6 | 0.002 | 0.38 | 0.0 | 0.04 | 9.17 | 0.00 | 2.180 | 5.51 | 0.41 | 1.5 | 98.5 | 0.0 | 2.97 | 0.64 | 0.80 | 2.02 | 3.6 | 0.004 | 0.66 | 0.0 | 0.04 | 13.84 | 0.00 | 2.158 | 10.48 | 0.68 | 1.9 | 98.1 | 0.0 | 2.22 | 0.56 | 0.63 | 0.81 | 1.23 | 13923 | 1827 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7R9o | 24330 | 2022-05-12 | 2021-06-29 | 4.0 | 4.66 | — | 4.0 | 0.002 | 0.38 | 0.0 | 0.04 | 4.49 | 0.00 | 2.252 | 2.85 | 0.25 | 10.5 | 88.7 | 0.8 | -4.93 | 0.83 | 0.71 | — | 4.0 | 0.003 | 0.58 | 0.0 | 0.04 | 10.75 | 0.00 | 1.956 | 12.04 | 0.00 | 3.8 | 96.2 | 0.0 | -0.37 | 3.44 | 0.88 | 0.83 | — | 7726 | 505 | 1 | 0 | 0 | 0 | 3938 | logfile |
✔ | 5ZBo | 6746 | 2022-05-16 | 2018-02-12 | 4.12 | 4.69 | — | 4.8 | 0.001 | 0.38 | 0.0 | 0.04 | 15.92 | 0.00 | 2.148 | 1.93 | 0.49 | 11.1 | 86.2 | 2.7 | -4.88 | 0.71 | 0.60 | — | 4.1 | 0.003 | 0.77 | 1.0 | 0.04 | 13.18 | 0.00 | 2.045 | 19.68 | 0.00 | 5.9 | 94.1 | 0.0 | -2.25 | 2.94 | 0.74 | 0.79 | — | 89100 | 10860 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TQV | 26073 | 2022-05-14 | 2022-01-27 | 3.43 | 3.72 | — | 3.7 | 0.002 | 0.38 | 0.0 | 0.04 | 7.79 | 0.00 | 2.162 | 5.03 | 0.82 | 3.8 | 96.2 | 0.0 | -0.34 | 0.68 | 0.69 | 2.18 | 3.6 | 0.003 | 0.58 | 0.0 | 0.04 | 12.75 | 0.00 | 2.161 | 8.45 | 0.33 | 3.7 | 96.3 | 0.0 | -0.53 | 1.51 | 0.73 | 0.76 | 2.14 | 17792 | 2083 | 8 | 66 | 0 | 0 | 0 | logfile |
✔ | 6PCH | 20300 | 2022-05-15 | 2019-06-17 | 2.9 | 3.23 | — | 3.1 | 0.005 | 0.38 | 0.0 | 0.02 | 12.69 | 0.02 | 1.702 | 3.92 | 2.23 | 7.9 | 92.0 | 0.1 | -4.23 | 0.61 | 0.79 | 3.30 | 3.1 | 0.007 | 0.79 | 0.0 | 0.04 | 15.44 | 0.01 | 1.965 | 12.12 | 6.57 | 9.5 | 90.3 | 0.2 | -2.30 | 0.50 | 0.63 | 0.83 | 2.23 | 72134 | 964 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 7JSE | 22451 | 2022-05-13 | 2020-08-14 | 4.6 | 5.13 | — | 4.2 | 0.001 | 0.38 | 0.0 | 0.02 | 10.51 | 0.00 | 2.425 | 0.00 | 0.00 | 11.4 | 88.0 | 0.6 | -2.68 | 0.79 | 0.50 | — | 3.8 | 0.005 | 0.96 | 0.0 | 0.08 | 14.35 | 0.00 | 2.201 | 6.17 | 0.00 | 15.6 | 84.4 | 0.0 | -2.03 | 2.71 | 0.83 | 0.74 | — | 13288 | 3168 | 24 | 32 | 0 | 0 | 0 | logfile |
✔ | 6NF8 | 9362 | 2022-05-13 | 2018-12-19 | 3.48 | 3.99 | — | 3.6 | 0.001 | 0.39 | 0.0 | 0.03 | 12.76 | 0.00 | 1.916 | 3.14 | 0.58 | 10.4 | 88.3 | 1.3 | -2.53 | 0.76 | 0.60 | 1.16 | 3.5 | 0.003 | 0.67 | 0.0 | 0.04 | 15.68 | 0.00 | 2.019 | 12.91 | 0.19 | 5.5 | 94.5 | 0.0 | -0.34 | 2.59 | 0.84 | 0.79 | 1.23 | 65776 | 5509 | 32 | 952 | 147 | 0 | 0 | logfile |
✔ | 6KS8 | 0760 | 2022-05-13 | 2019-08-23 | 4.69 | 4.76 | — | 4.6 | 0.001 | 0.39 | 0.0 | 0.04 | 7.12 | 0.00 | 2.228 | 5.95 | 0.01 | 4.4 | 95.5 | 0.0 | -3.61 | 0.77 | 0.67 | — | 4.6 | 0.003 | 0.69 | 0.0 | 0.04 | 11.61 | 0.00 | 2.100 | 15.65 | 0.01 | 3.0 | 97.0 | 0.0 | -0.13 | 1.85 | 0.80 | 0.71 | — | 61943 | 8120 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KS7 | 0759 | 2022-05-13 | 2019-08-23 | 4.62 | 4.57 | — | 4.5 | 0.001 | 0.39 | 0.0 | 0.04 | 7.11 | 0.00 | 2.241 | 5.80 | 0.00 | 4.3 | 95.7 | 0.0 | -3.50 | 0.70 | 0.62 | — | 4.5 | 0.009 | 0.91 | 0.0 | 0.05 | 12.10 | 0.00 | 1.014 | 21.96 | 0.03 | 3.5 | 96.4 | 0.1 | -0.25 | 1.82 | 0.74 | 0.68 | — | 62022 | 8131 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KRE | 0757 | 2022-05-13 | 2019-08-21 | 4.45 | 4.34 | — | 4.4 | 0.001 | 0.39 | 0.0 | 0.04 | 7.11 | 0.00 | 2.244 | 6.14 | 0.03 | 4.1 | 95.8 | 0.1 | -3.50 | 0.61 | 0.56 | — | 4.4 | 0.004 | 0.75 | 1.0 | 0.04 | 12.02 | 0.00 | 2.101 | 12.70 | 0.05 | 3.2 | 96.8 | 0.1 | 0.24 | 1.77 | 0.65 | 0.62 | — | 60321 | 7922 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KRD | 0756 | 2022-05-13 | 2019-08-21 | 4.38 | 4.25 | — | 4.4 | 0.001 | 0.39 | 0.0 | 0.04 | 7.15 | 0.00 | 2.226 | 5.90 | 0.00 | 4.5 | 95.5 | 0.1 | -3.58 | 0.57 | 0.52 | — | 4.3 | 0.008 | 0.86 | 1.0 | 0.05 | 11.99 | 0.00 | 1.822 | 15.52 | 0.01 | 3.3 | 96.6 | 0.1 | -0.02 | 1.78 | 0.63 | 0.59 | — | 61005 | 8006 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SAM | 24952 | 2022-05-12 | 2021-09-22 | 4.3 | 6.95 | 4.38 | 4.2 | 0.001 | 0.39 | 0.0 | 0.02 | 13.28 | 0.00 | 1.952 | 2.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.84 | 0.51 | — | 4.3 | 0.006 | 0.88 | 0.0 | 0.04 | 22.86 | 0.01 | 1.817 | 83.53 | 0.00 | 0.0 | 0.0 | 0.0 | — | 5.89 | 0.95 | 0.86 | — | 5399 | 0 | 1 | 169 | 0 | 0 | 1802 | logfile |
✔ | 6XGC | 22180 | 2022-05-14 | 2020-06-17 | 4.1 | 4.25 | — | 4.2 | 0.001 | 0.39 | 0.0 | 0.04 | 7.78 | 0.00 | 2.215 | 5.92 | 0.16 | 2.3 | 97.7 | 0.0 | 1.43 | 0.80 | 0.81 | — | 4.2 | 0.006 | 0.76 | 0.0 | 0.05 | 11.55 | 0.00 | 2.105 | 14.11 | 0.00 | 5.4 | 94.6 | 0.0 | -0.51 | 1.33 | 0.82 | 0.84 | — | 17040 | 2157 | 21 | 0 | 21 | 0 | 0 | logfile |
✔ | 7oZP | 13131 | 2022-05-12 | 2021-06-28 | 3.8 | 4.17 | 3.83 | 4.0 | 0.002 | 0.39 | 0.0 | 0.04 | 14.04 | 0.00 | 1.969 | 4.78 | 0.00 | 2.1 | 97.9 | 0.0 | 1.24 | 0.79 | 0.71 | 0.86 | 4.0 | 0.009 | 0.95 | 2.0 | 0.05 | 16.67 | 0.01 | 1.544 | 21.89 | 0.20 | 3.3 | 96.7 | 0.0 | 0.24 | 0.93 | 0.83 | 0.78 | 1.28 | 54330 | 6774 | 32 | 0 | 10 | 0 | 0 | logfile |
✘ | 6XLH | 22244 | 2022-05-13 | 2020-06-28 | 2.83 | 2.93 | — | 2.9 | 0.001 | 0.39 | 0.0 | 0.04 | 7.54 | 0.00 | 2.093 | 5.99 | 0.13 | 1.5 | 98.5 | 0.0 | -3.84 | 0.73 | 0.80 | 3.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13608 | 1675 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7oZo | 13130 | 2022-05-12 | 2021-06-28 | 3.8 | 4.06 | 3.82 | 3.9 | 0.002 | 0.39 | 0.0 | 0.04 | 14.07 | 0.00 | 1.993 | 4.68 | 0.00 | 2.1 | 97.9 | 0.0 | 1.21 | 0.79 | 0.71 | 0.70 | 3.9 | 0.004 | 0.73 | 0.0 | 0.05 | 16.76 | 0.01 | 2.113 | 15.84 | 0.38 | 3.6 | 96.4 | 0.0 | -0.09 | 1.26 | 0.82 | 0.78 | 0.89 | 54330 | 6774 | 32 | 0 | 10 | 0 | 0 | logfile |
✔ | 7oo8 | 13007 | 2022-05-13 | 2021-05-26 | 3.7 | 2.99 | 3.39 | 3.0 | 0.003 | 0.40 | 0.0 | 0.04 | 9.89 | 0.00 | 2.286 | 6.45 | 0.00 | 1.9 | 98.1 | 0.0 | 2.79 | 0.65 | 0.79 | 2.44 | 3.0 | 0.003 | 0.48 | 0.0 | 0.04 | 14.96 | 0.00 | 2.291 | 10.06 | 0.27 | 1.2 | 98.8 | 0.0 | 2.49 | 0.46 | 0.65 | 0.79 | 2.25 | 13923 | 1827 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7EoS | 31229 | 2022-05-15 | 2021-04-22 | 3.9 | 4.43 | — | 3.9 | 0.001 | 0.40 | 0.0 | 0.04 | 9.12 | 0.00 | 2.254 | 6.57 | 1.89 | 4.1 | 95.8 | 0.1 | 0.47 | 0.88 | 0.78 | 1.32 | 4.0 | 0.004 | 0.71 | 0.0 | 0.04 | 12.91 | 0.00 | 2.114 | 15.89 | 0.27 | 6.9 | 93.1 | 0.1 | -0.55 | 2.28 | 0.91 | 0.83 | 1.42 | 24600 | 3106 | 8 | 0 | 18 | 0 | 0 | logfile |