Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7Fii	31598	2023-08-11	2021-07-31	4.3	4.37	—	4.1	0.002	0.36	0.0	0.04	8.97	0.00	2.073	1.66	0.00	0.9	99.1	0.0	3.08	0.64	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8765	1522	6	0	0	0	0	logfile
✔	8C93	16500	2023-08-27	2023-01-21	4.17	4.72	4.51	4.3	0.001	0.36	0.0	0.03	13.25	0.00	1.053	6.07	0.07	4.9	95.1	0.0	0.52	0.84	0.79	—	4.1	0.005	0.65	0.0	0.03	15.97	0.00	1.948	27.75	0.00	8.3	91.6	0.1	-1.47	0.75	0.86	0.85	—	50320	1657	17	1740	0	0	0	logfile
✔	6MWQ	9277	2023-08-17	2018-10-30	3.0	3.33	2.89	3.1	0.001	0.36	0.0	0.04	4.66	0.00	2.321	4.19	0.13	11.0	87.5	1.5	-4.81	0.54	0.39	0.22	3.1	0.003	0.72	0.0	0.04	13.43	0.00	2.152	8.38	1.78	4.1	95.7	0.2	-1.12	1.34	0.78	0.87	1.94	22072	2873	8	0	0	0	0	logfile
✔	7MVU	24056	2023-08-18	2021-05-15	3.77	4.87	3.73	4.0	0.002	0.36	0.0	0.03	6.38	0.00	2.187	3.55	0.00	1.1	98.9	0.0	-0.33	0.85	0.73	0.19	4.0	0.003	0.58	0.0	0.03	11.75	0.00	1.882	11.93	0.22	3.2	96.8	0.0	2.54	2.06	0.88	0.82	0.36	25645	1604	2	0	0	0	12841	logfile
✘	7XL4	33272	2023-08-18	2022-04-21	3.86	3.92	—	3.8	0.001	0.36	0.0	0.04	9.42	0.00	2.274	4.13	0.00	1.4	98.6	0.0	-4.82	0.78	0.75	1.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24560	3479	8	0	3	0	0	logfile
✔	7R9E	24324	2023-08-10	2021-06-29	4.0	4.83	—	3.9	0.002	0.37	0.0	0.04	4.45	0.00	2.277	3.11	0.00	9.9	88.7	1.4	-3.58	0.87	0.80	—	3.9	0.002	0.56	0.0	0.04	9.08	0.00	2.177	7.90	0.00	5.0	95.0	0.0	0.09	1.76	0.88	0.82	—	7726	505	1	0	0	0	3938	logfile
✔	8FEJ	29029	2023-08-11	2022-12-06	4.64	5.33	4.68	4.6	0.001	0.37	0.0	0.04	13.97	0.00	2.253	6.27	4.30	2.9	96.9	0.2	0.48	0.88	0.69	—	4.5	0.002	0.56	0.0	0.04	12.24	0.00	2.204	9.64	0.00	6.1	93.7	0.2	-0.44	1.31	0.91	0.74	—	10464	1368	3	0	0	0	0	logfile
✔	6NEQ	9358	2023-08-13	2018-12-18	3.32	3.85	—	3.5	0.001	0.37	0.0	0.03	12.81	0.00	1.949	3.29	0.35	10.3	88.1	1.6	-2.42	0.69	0.51	0.07	3.5	0.004	0.68	0.0	0.04	16.33	0.00	2.089	13.57	0.39	5.4	94.5	0.1	-0.36	2.01	0.85	0.85	1.39	65776	5509	32	952	147	0	0	logfile
✔	6X35	22018	2023-08-11	2020-05-21	4.2	4.14	—	4.2	0.001	0.37	0.0	0.03	8.42	0.00	2.202	3.37	0.05	1.8	98.1	0.0	-1.11	0.52	0.67	—	4.1	0.003	0.64	0.0	0.04	11.49	0.00	2.229	8.53	0.02	3.2	96.8	0.0	1.06	1.69	0.57	0.72	—	111888	14740	16	0	1432	0	0	logfile
✔	6X33	22016	2023-08-12	2020-05-21	4.2	4.35	—	4.3	0.001	0.37	0.0	0.03	9.39	0.00	2.304	3.24	0.00	1.9	98.1	0.0	-4.22	0.55	0.69	—	4.3	0.003	0.64	0.0	0.04	11.75	0.00	2.056	8.49	0.06	3.0	97.0	0.0	0.21	0.65	0.57	0.72	—	112372	14796	16	0	1436	0	0	logfile
✔	8D9K	27264	2023-08-09	2022-06-10	3.72	4.58	3.85	4.1	0.001	0.37	0.0	0.03	9.12	0.00	2.270	6.46	0.64	1.9	98.1	0.0	1.53	0.89	0.84	2.42	4.1	0.002	0.50	0.0	0.04	11.60	0.00	2.170	10.48	0.00	2.6	97.4	0.0	0.62	0.58	0.90	0.85	2.17	5708	546	3	65	0	0	0	logfile
✔	7TCP	25816	2023-08-13	2021-12-27	3.84	3.97	—	3.9	0.002	0.37	0.0	0.03	9.57	0.00	2.327	4.21	1.26	2.8	97.2	0.0	2.66	0.70	0.81	2.29	3.9	0.003	0.50	0.0	0.04	12.75	0.00	2.113	5.39	0.60	3.3	96.7	0.0	2.51	0.36	0.71	0.83	2.44	14992	1912	12	0	12	0	0	logfile
✔	7TJ2	25915	2023-08-14	2022-01-14	3.2	3.32	—	3.4	0.002	0.37	0.0	0.04	8.62	0.00	2.196	3.77	1.64	2.4	97.6	0.0	0.18	0.69	0.76	3.52	3.3	0.004	0.55	0.0	0.04	13.47	0.00	2.193	6.19	0.40	3.2	96.8	0.0	-0.17	2.83	0.71	0.82	3.42	17083	2007	8	62	0	0	0	logfile
✔	7Xo2	33334	2023-08-09	2022-04-30	3.0	2.83	2.60	2.9	0.001	0.38	0.0	0.05	18.12	0.00	2.586	6.10	0.00	5.0	95.0	0.0	-0.89	0.49	0.87	6.67	2.9	0.005	0.60	0.0	0.05	19.10	0.00	2.290	4.76	3.88	7.2	92.8	0.0	-1.69	2.16	0.49	0.88	6.49	2550	372	6	0	0	0	0	logfile
✔	7T4M	25680	2023-08-24	2021-12-10	2.48	2.77	2.55	2.7	0.001	0.38	0.0	0.04	9.69	0.00	2.253	4.85	0.97	1.6	98.4	0.0	1.34	0.72	0.86	4.48	2.7	0.002	0.49	0.0	0.04	12.83	0.00	2.168	5.88	0.67	1.3	98.7	0.0	1.57	0.90	0.74	0.88	3.95	39054	4854	12	0	0	0	0	logfile
✘	7VF9	31948	2023-08-18	2021-09-10	4.04	4.13	—	4.1	0.001	0.38	0.0	0.04	9.65	0.00	2.176	3.71	0.05	1.5	98.5	0.0	-4.44	0.74	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24247	3425	7	0	3	0	0	logfile
✔	7R9o	24330	2023-08-10	2021-06-29	4.0	4.66	—	4.0	0.002	0.38	0.0	0.04	4.49	0.00	2.252	2.85	0.25	10.5	88.7	0.8	-4.93	0.83	0.71	—	4.0	0.003	0.60	0.0	0.04	11.04	0.00	1.937	11.65	0.00	4.2	95.8	0.0	-0.51	3.45	0.88	0.83	—	7726	505	1	0	0	0	3938	logfile
✔	8E42	27877	2023-08-13	2022-08-17	2.29	2.95	2.61	2.7	0.005	0.38	0.0	0.07	12.94	0.02	1.931	1.94	0.53	4.0	96.0	0.0	0.92	0.73	0.91	4.67	2.7	0.005	0.61	0.0	0.04	14.07	0.01	1.770	3.67	0.53	5.3	94.7	0.0	0.08	0.29	0.71	0.91	5.08	115718	1179	11	3016	2	0	41815	logfile
✔	7oNL	12997	2023-08-13	2021-05-25	3.9	3.35	3.58	3.6	0.002	0.38	0.0	0.04	9.17	0.00	2.180	5.51	0.41	1.5	98.5	0.0	2.97	0.64	0.80	2.02	3.6	0.003	0.63	0.0	0.04	13.87	0.00	2.200	9.71	0.74	1.4	98.6	0.0	2.16	0.57	0.64	0.81	1.09	13923	1827	7	0	0	0	0	logfile
✔	7TQV	26073	2023-08-15	2022-01-27	3.43	3.72	—	3.7	0.002	0.38	0.0	0.04	7.79	0.00	2.162	5.00	0.82	3.8	96.2	0.0	-0.34	0.68	0.69	2.18	3.6	0.003	0.56	0.0	0.04	12.72	0.00	2.213	8.13	0.33	3.7	96.3	0.0	-0.50	1.51	0.73	0.76	2.12	17792	2083	8	66	0	0	0	logfile

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