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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7XSK | 33425 | 2023-12-09 | 2022-05-14 | 3.53 | 4.49 | 3.42 | 3.4 | 0.001 | 0.44 | 0.0 | 0.02 | 23.47 | 0.00 | 1.970 | 6.98 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.90 | 0.76 | — | 3.4 | 0.007 | 0.70 | 0.0 | 0.04 | 24.80 | 0.01 | 1.762 | 32.64 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.16 | 0.91 | 0.83 | — | 12467 | 0 | 1 | 388 | 0 | 0 | 4168 | logfile |
✔ | 8H0P | 34413 | 2023-12-08 | 2022-09-30 | 3.15 | 2.98 | 3.14 | 3.2 | 0.001 | 0.40 | 0.0 | 0.04 | 7.54 | 0.00 | 2.208 | 5.68 | 0.10 | 1.2 | 98.8 | 0.0 | -2.49 | 0.52 | 0.65 | 1.60 | 3.2 | 0.004 | 0.63 | 0.0 | 0.04 | 13.57 | 0.00 | 2.018 | 12.42 | 0.10 | 2.8 | 97.2 | 0.0 | -0.20 | 1.36 | 0.57 | 0.79 | 2.58 | 8932 | 1137 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KRD | 0756 | 2023-12-09 | 2019-08-21 | 4.38 | 4.25 | — | 4.4 | 0.001 | 0.39 | 0.0 | 0.04 | 7.15 | 0.00 | 2.226 | 5.80 | 0.00 | 4.5 | 95.5 | 0.1 | -3.58 | 0.57 | 0.52 | — | 4.3 | 0.003 | 0.67 | 0.0 | 0.04 | 11.93 | 0.00 | 2.014 | 12.31 | 0.01 | 3.2 | 96.7 | 0.1 | 0.08 | 1.78 | 0.62 | 0.58 | — | 61005 | 8006 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KRE | 0757 | 2023-12-08 | 2019-08-21 | 4.45 | 4.34 | — | 4.4 | 0.001 | 0.39 | 0.0 | 0.04 | 7.11 | 0.00 | 2.244 | 6.04 | 0.03 | 4.1 | 95.8 | 0.1 | -3.50 | 0.61 | 0.56 | — | 4.4 | 0.003 | 0.68 | 0.0 | 0.04 | 11.97 | 0.00 | 2.090 | 13.71 | 0.03 | 3.5 | 96.4 | 0.1 | 0.20 | 1.80 | 0.67 | 0.64 | — | 60321 | 7922 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KS8 | 0760 | 2023-12-09 | 2019-08-23 | 4.69 | 4.76 | — | 4.6 | 0.001 | 0.39 | 0.0 | 0.04 | 7.12 | 0.00 | 2.228 | 5.86 | 0.01 | 4.4 | 95.5 | 0.0 | -3.61 | 0.77 | 0.67 | — | 4.6 | 0.003 | 0.73 | 0.0 | 0.05 | 11.70 | 0.00 | 2.011 | 17.70 | 0.01 | 3.4 | 96.6 | 0.0 | -0.29 | 1.89 | 0.81 | 0.73 | — | 61943 | 8120 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 5GW4 | 9540 | 2023-12-09 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.49 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WoG | 32651 | 2023-12-07 | 2022-01-21 | 4.06 | 2.95 | — | 2.0 | 0.001 | 0.41 | 0.0 | 0.04 | 8.09 | 0.00 | 2.293 | 10.22 | 3.78 | 8.0 | 92.0 | 0.0 | -3.98 | 0.51 | 0.51 | — | 2.2 | 0.003 | 0.71 | 0.0 | 0.04 | 10.94 | 0.00 | 2.020 | 21.35 | 0.00 | 13.1 | 86.9 | 0.0 | -2.59 | 1.02 | 0.54 | 0.55 | — | 3362 | 433 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8AA4 | 15293 | 2023-12-10 | 2022-06-29 | 3.1 | 3.54 | 2.92 | 3.2 | 0.001 | 0.41 | 0.0 | 0.04 | 7.46 | 0.00 | 2.240 | 3.52 | 0.00 | 2.7 | 97.2 | 0.1 | 0.39 | 0.73 | 0.88 | 4.17 | 3.2 | 0.004 | 0.59 | 0.0 | 0.04 | 10.31 | 0.00 | 2.136 | 4.08 | 0.00 | 4.6 | 95.3 | 0.1 | -0.44 | 0.94 | 0.73 | 0.90 | 4.26 | 13616 | 1742 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NF8 | 9362 | 2023-12-10 | 2018-12-19 | 3.48 | 3.99 | — | 3.6 | 0.001 | 0.39 | 0.0 | 0.03 | 16.64 | 0.00 | 1.916 | 3.08 | 0.58 | 10.4 | 88.3 | 1.3 | -2.53 | 0.76 | 0.60 | 1.16 | 3.5 | 0.003 | 0.68 | 0.0 | 0.04 | 18.69 | 0.00 | 2.017 | 13.43 | 0.33 | 5.9 | 94.1 | 0.0 | -0.40 | 2.60 | 0.84 | 0.79 | 1.20 | 65776 | 5509 | 32 | 952 | 147 | 0 | 0 | logfile |
✔ | 6NEQ | 9358 | 2023-12-10 | 2018-12-18 | 3.32 | 3.85 | — | 3.5 | 0.001 | 0.37 | 0.0 | 0.03 | 16.68 | 0.00 | 1.949 | 3.29 | 0.35 | 10.3 | 88.1 | 1.6 | -2.42 | 0.69 | 0.51 | 0.07 | 3.5 | 0.003 | 0.66 | 0.0 | 0.03 | 19.12 | 0.00 | 2.104 | 12.87 | 0.35 | 5.0 | 94.9 | 0.1 | -0.29 | 2.00 | 0.85 | 0.85 | 1.25 | 65776 | 5509 | 32 | 952 | 147 | 0 | 0 | logfile |
✔ | 6X35 | 22018 | 2023-12-08 | 2020-05-21 | 4.2 | 4.14 | — | 4.2 | 0.001 | 0.37 | 0.0 | 0.03 | 8.42 | 0.00 | 2.202 | 3.37 | 0.05 | 1.8 | 98.1 | 0.0 | -1.11 | 0.52 | 0.67 | — | 4.1 | 0.003 | 0.64 | 0.0 | 0.04 | 11.49 | 0.00 | 2.229 | 8.53 | 0.02 | 3.2 | 96.8 | 0.0 | 1.06 | 1.69 | 0.57 | 0.72 | — | 111888 | 14740 | 16 | 0 | 1432 | 0 | 0 | logfile |
✔ | 7LH3 | 23335 | 2023-12-09 | 2021-01-21 | 4.3 | 4.87 | — | 4.6 | 0.001 | 0.40 | 0.0 | 0.04 | 7.88 | 0.00 | 2.258 | 4.71 | 1.06 | 1.8 | 98.2 | 0.0 | 2.29 | 0.61 | 0.73 | — | 4.6 | 0.003 | 0.62 | 0.0 | 0.04 | 10.77 | 0.00 | 2.289 | 10.84 | 0.00 | 3.5 | 96.5 | 0.0 | 1.90 | 1.12 | 0.63 | 0.82 | — | 10452 | 1360 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JSH | 22454 | 2023-12-08 | 2020-08-14 | 4.4 | 7.07 | — | 17.0 | 0.001 | 0.20 | 0.0 | 0.02 | 8.81 | 0.00 | 2.581 | 0.00 | 0.00 | 13.1 | 83.7 | 3.2 | -3.27 | 0.49 | 0.25 | — | 5.3 | 0.005 | 1.30 | 0.0 | 0.05 | 13.69 | 0.01 | 1.942 | 27.17 | 0.00 | 31.8 | 67.9 | 0.3 | -5.48 | 6.11 | 0.73 | 0.61 | — | 7916 | 1904 | 8 | 15 | 0 | 0 | 0 | logfile |
✔ | 7CR3 | 30446 | 2023-12-10 | 2020-08-12 | 3.6 | 3.76 | — | 3.7 | 0.002 | 0.55 | 0.0 | 0.04 | 14.56 | 0.00 | 2.232 | 12.46 | 0.00 | 3.3 | 96.7 | 0.0 | -3.24 | 0.61 | 0.75 | 1.93 | 3.7 | 0.003 | 0.88 | 0.0 | 0.04 | 16.74 | 0.00 | 2.172 | 16.93 | 0.42 | 3.4 | 96.6 | 0.0 | 0.98 | 2.01 | 0.60 | 0.72 | 1.15 | 15924 | 1968 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Z8R | 14561 | 2023-12-10 | 2022-03-18 | 2.7 | 2.85 | 2.72 | 2.9 | 0.002 | 0.52 | 0.0 | 0.04 | 13.27 | 0.00 | 1.991 | 4.45 | 0.12 | 2.0 | 98.0 | 0.0 | 1.79 | 0.80 | 0.84 | 3.22 | 2.9 | 0.002 | 0.52 | 0.0 | 0.04 | 15.89 | 0.00 | 2.243 | 4.45 | 1.33 | 2.1 | 97.9 | 0.0 | 2.31 | 1.97 | 0.82 | 0.89 | 2.60 | 15124 | 1950 | 3 | 0 | 3 | 0 | 0 | logfile |
✔ | 7P1J | 13162 | 2023-12-08 | 2021-07-01 | 3.04 | 4.02 | 2.96 | 4.0 | 0.002 | 0.48 | 0.0 | 0.03 | 8.89 | 0.00 | 2.305 | 5.96 | 2.29 | 3.5 | 96.5 | 0.0 | 2.14 | 0.65 | 0.71 | 0.64 | 4.0 | 0.003 | 0.87 | 0.0 | 0.04 | 14.68 | 0.00 | 2.227 | 16.91 | 0.72 | 6.3 | 93.7 | 0.0 | 0.73 | 1.43 | 0.66 | 0.74 | 0.77 | 6502 | 868 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7VGS | 31978 | 2023-12-10 | 2021-09-18 | 2.8 | 3.28 | — | 3.3 | 0.002 | 0.66 | 0.0 | 0.04 | 12.19 | 0.01 | 2.230 | 9.89 | 0.38 | 7.0 | 93.0 | 0.0 | -1.16 | 0.67 | 0.75 | 2.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9700 | 1254 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 8A01 | 15044 | 2023-12-07 | 2022-05-26 | 3.2 | 3.25 | 3.20 | 3.2 | 0.002 | 0.44 | 0.0 | 0.05 | 14.81 | 0.00 | 2.289 | 4.13 | 0.00 | 2.0 | 98.0 | 0.0 | 0.02 | 0.48 | 0.86 | 2.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5511 | 717 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XQG | 33395 | 2023-12-09 | 2022-05-07 | 3.8 | 4.58 | 3.85 | 4.2 | 0.002 | 0.46 | 0.0 | 0.03 | 12.11 | 0.00 | 2.268 | 4.64 | 5.00 | 1.5 | 98.0 | 0.5 | 2.98 | 0.79 | 0.85 | 2.01 | 4.2 | 0.003 | 0.75 | 0.0 | 0.04 | 15.10 | 0.00 | 2.296 | 8.03 | 0.19 | 3.7 | 96.3 | 0.0 | 2.23 | 0.77 | 0.79 | 0.84 | 1.46 | 10206 | 1206 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 8BC1 | 15959 | 2023-12-08 | 2022-10-14 | 2.93 | 3.48 | 2.73 | 3.5 | 0.002 | 0.46 | 0.0 | 0.04 | 10.38 | 0.00 | 2.265 | 7.96 | 3.43 | 2.9 | 97.1 | 0.0 | 1.53 | 0.38 | 0.52 | 1.52 | 3.5 | 0.004 | 0.81 | 0.0 | 0.04 | 15.72 | 0.01 | 2.131 | 15.98 | 2.25 | 4.8 | 95.2 | 0.0 | 0.67 | 1.04 | 0.40 | 0.54 | 1.03 | 8684 | 1054 | 4 | 0 | 6 | 0 | 0 | logfile |