Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6KS8	0760	2021-06-05	2019-08-23	4.69	4.76	—	4.6	0.001	0.39	0.0	0.04	7.12	0.00	2.228	5.83	0.01	4.4	95.5	0.0	-3.61	0.77	0.67	—	4.6	0.003	0.74	0.0	0.04	11.89	0.00	2.048	17.59	0.03	3.9	96.0	0.0	-0.29	2.03	0.82	0.73	—	61943	8120	16	0	0	0	0	logfile
✔	5GW4	9540	2021-06-06	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.48	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	4.8	0.003	0.77	0.0	0.05	12.02	0.00	1.919	15.73	0.06	3.9	96.0	0.1	0.23	3.45	0.74	0.60	—	64544	8446	16	0	0	0	0	logfile
✘	6MWQ	9277	2021-06-03	2018-10-30	3.0	3.33	2.89	3.1	0.001	0.36	0.0	0.04	4.66	0.00	2.321	4.19	0.13	11.0	87.5	1.5	-4.81	0.54	0.39	0.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22072	2873	8	0	0	0	0	logfile
✔	5N6W	3595	2021-06-04	2017-02-16	4.2	4.31	—	4.2	0.001	0.36	0.0	0.04	4.92	0.00	2.309	3.73	0.00	17.7	79.7	2.6	-5.61	0.44	0.28	—	4.2	0.003	0.72	0.0	0.04	12.22	0.01	1.905	17.05	0.04	15.0	84.5	0.5	-4.03	2.62	0.72	0.73	—	40752	2512	16	0	0	0	20032	logfile
✔	6NF8	9362	2021-06-06	2018-12-19	3.48	3.99	—	3.5	0.001	0.39	0.0	0.03	12.76	0.00	1.916	3.03	0.58	10.4	88.3	1.3	-2.53	0.76	0.60	1.16	3.5	0.003	0.68	0.0	0.04	16.15	0.01	2.054	14.16	0.48	5.8	94.2	0.0	-0.31	2.62	0.84	0.80	1.14	65776	5509	32	952	147	0	0	logfile
✔	6HD5	0201	2021-06-02	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.003	0.80	0.0	0.04	12.24	0.01	2.154	19.96	0.00	6.7	93.2	0.1	-0.57	2.17	0.45	0.52	—	9707	1234	3	0	0	0	0	logfile
✔	6PLQ	20372	2021-06-02	2019-07-01	3.4	4.30	—	4.3	0.001	0.43	0.0	0.04	7.21	0.00	2.285	5.97	0.00	2.0	98.0	0.0	-4.40	0.57	0.36	0.62	3.9	0.005	0.93	0.0	0.05	15.07	0.00	2.064	15.06	0.58	5.9	94.1	0.0	-1.61	2.46	0.76	0.85	2.50	14240	1730	15	0	20	0	0	logfile
✔	6X32	22015	2021-06-05	2020-05-21	3.8	3.75	—	3.9	0.001	0.36	0.0	0.03	7.99	0.00	2.266	3.27	0.00	1.4	98.6	0.0	-3.72	0.56	0.69	2.26	3.8	0.005	0.70	0.0	0.04	13.49	0.01	2.121	8.75	0.43	3.3	96.7	0.0	0.57	1.69	0.61	0.74	1.83	114280	14744	16	0	1416	0	0	logfile
✔	6Y5H	10697	2021-06-02	2020-02-25	3.0	3.10	3.04	3.1	0.002	0.56	0.0	0.07	14.94	0.01	2.238	2.81	0.70	4.1	95.9	0.0	-2.50	0.53	0.56	0.43	3.1	0.003	0.57	0.0	0.04	17.06	0.00	2.174	4.42	2.81	2.7	97.3	0.0	-0.23	1.10	0.74	0.85	3.73	11994	1470	18	0	33	0	0	logfile
✔	6LXD	30005	2021-06-02	2020-02-10	3.9	3.67	—	3.5	0.002	0.55	0.0	0.04	13.46	0.00	2.239	15.14	0.70	9.3	90.7	0.0	-3.27	0.87	0.79	0.87	3.5	0.003	0.83	0.0	0.04	15.00	0.01	2.119	19.07	0.58	10.3	89.7	0.0	-1.51	0.78	0.88	0.79	1.01	9435	963	5	72	2	0	0	logfile
✔	6VWN	21422	2021-06-02	2020-02-20	3.4	3.71	—	3.2	0.002	0.58	0.0	0.03	14.91	0.00	1.951	7.11	3.85	4.3	95.7	0.0	-3.14	0.83	0.82	1.13	3.2	0.003	0.62	0.0	0.03	16.42	0.00	1.915	16.14	0.55	6.4	93.6	0.0	-1.39	1.29	0.84	0.86	1.08	140036	5341	57	4580	55	0	0	logfile
✔	6W18	21503	2021-06-02	2020-03-03	4.2	4.20	4.18	4.2	0.002	0.41	0.0	0.04	11.01	0.00	2.196	4.67	0.00	3.0	97.0	0.0	-3.43	0.71	0.62	—	4.2	0.005	0.79	0.0	0.05	12.90	0.00	2.055	13.93	0.09	8.9	91.1	0.0	-1.99	1.61	0.78	0.72	—	13151	1837	9	0	3	0	0	logfile
✔	6LXE	30006	2021-06-02	2020-02-10	4.2	4.23	—	4.0	0.002	0.59	0.0	0.04	15.29	0.00	2.030	16.76	0.14	8.7	91.3	0.0	-3.22	0.85	0.70	—	3.9	0.004	0.87	0.0	0.05	14.79	0.01	2.084	30.26	0.00	11.2	88.8	0.0	-2.39	1.33	0.86	0.72	—	6519	813	4	0	2	0	0	logfile
✔	7C8K	30306	2021-06-01	2020-06-02	3.2	3.18	—	3.1	0.002	0.49	0.0	0.04	13.54	0.00	2.001	4.88	0.00	3.2	96.8	0.0	-1.52	0.82	0.78	2.09	3.1	0.006	0.70	0.0	0.04	15.64	0.01	2.197	10.08	0.20	4.0	96.0	0.0	1.13	1.15	0.85	0.83	2.78	4853	596	3	0	6	0	0	logfile
✔	6ZQi	11364	2021-06-01	2020-07-09	3.8	4.13	3.63	4.1	0.002	0.56	0.0	0.04	12.40	0.00	2.336	5.73	1.12	3.1	96.9	0.0	-2.14	0.67	0.78	0.85	4.1	0.005	0.83	0.0	0.05	16.18	0.00	2.208	12.87	0.93	5.4	94.6	0.0	-0.79	0.72	0.68	0.80	1.24	5032	655	4	0	1	0	0	logfile
✔	6V4U	21048	2021-06-01	2019-12-01	3.8	4.31	—	4.1	0.002	0.47	0.0	0.04	9.64	0.00	2.273	4.54	0.00	6.1	93.9	0.0	-3.58	0.73	0.61	1.20	4.1	0.004	0.83	0.0	0.05	13.42	0.01	2.207	12.74	1.02	11.5	88.5	0.0	-2.05	1.00	0.76	0.69	1.09	7074	1106	3	0	0	0	0	logfile
✔	6Wi9	21683	2021-06-01	2020-04-09	4.3	4.37	4.24	4.3	0.002	0.50	0.0	0.04	12.85	0.00	2.214	5.31	0.00	4.2	95.8	0.0	-3.72	0.77	0.78	—	4.3	0.003	0.68	0.0	0.04	13.83	0.00	2.081	14.57	0.00	6.4	93.6	0.0	-0.53	0.86	0.78	0.78	—	8550	1108	6	0	0	0	0	logfile
✔	7C7A	30297	2021-06-03	2020-05-24	2.8	3.32	—	3.1	0.002	0.58	0.0	0.04	14.30	0.00	2.157	8.77	0.04	5.9	94.0	0.1	-2.84	0.79	0.71	0.74	3.1	0.004	0.71	0.0	0.04	16.76	0.00	1.985	10.89	3.31	7.2	92.7	0.0	-0.46	1.48	0.85	0.82	1.37	27500	2519	16	339	4	0	0	logfile
✔	6UUS	20901	2021-06-01	2019-10-31	2.4	2.10	2.30	2.4	0.002	0.50	0.0	0.04	17.13	0.00	2.214	7.39	3.27	2.8	97.2	0.0	-2.25	0.57	0.72	3.22	2.2	0.003	0.57	0.0	0.04	17.58	0.00	2.173	8.97	1.43	2.9	97.1	0.0	0.67	1.03	0.64	0.77	3.21	9308	1190	7	0	0	0	0	logfile
✔	6V3D	21033	2021-06-03	2019-11-25	2.95	3.39	—	3.2	0.002	0.47	0.0	0.03	14.48	0.01	1.698	5.90	0.04	2.8	97.1	0.1	-1.93	0.85	0.86	2.47	3.2	0.003	0.61	0.0	0.03	15.82	0.01	1.895	7.21	2.98	3.8	96.2	0.1	-0.51	1.19	0.86	0.89	2.54	89040	3117	45	3007	108	231	0	logfile

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