Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NEQ	9358	2022-07-04	2018-12-18	3.32	3.85	—	3.5	0.001	0.37	0.0	0.03	12.81	0.00	1.949	3.35	0.35	10.3	88.1	1.6	-2.42	0.69	0.51	0.07	3.5	0.004	0.68	0.0	0.04	16.24	0.01	2.099	13.08	0.35	5.3	94.6	0.1	-0.32	1.93	0.84	0.84	1.44	65776	5509	32	952	147	0	0	logfile
✔	7LH3	23335	2022-07-03	2021-01-21	4.3	4.87	—	4.6	0.001	0.40	0.0	0.04	7.88	0.00	2.258	4.81	1.06	1.8	98.2	0.0	2.29	0.61	0.73	—	4.6	0.003	0.65	0.0	0.04	10.89	0.00	2.261	11.45	0.00	4.2	95.8	0.0	1.60	1.12	0.63	0.82	—	10452	1360	2	0	0	0	0	logfile
✔	6ZGG	11205	2022-07-05	2020-06-18	3.8	4.33	4.00	4.0	0.001	0.41	0.0	0.04	5.80	0.00	2.231	3.83	1.00	12.4	87.1	0.5	-2.52	0.84	0.74	0.73	4.0	0.004	0.68	0.0	0.04	11.53	0.00	2.149	9.60	0.11	4.9	95.1	0.0	-0.82	1.78	0.87	0.82	1.18	25096	3207	3	0	0	0	0	logfile
✔	7TBH	25799	2022-07-08	2021-12-22	2.3	3.49	—	2.8	0.001	0.43	0.0	0.03	8.12	0.00	2.141	6.38	0.43	7.8	91.4	0.8	0.80	0.78	0.76	0.52	2.8	0.003	0.64	0.0	0.04	13.85	0.01	2.127	8.11	0.39	2.0	97.6	0.4	2.81	0.94	0.81	0.87	2.74	51768	6288	48	0	0	0	0	logfile
✔	5G2X	3331	2022-07-04	2016-04-16	3.8	3.49	—	3.4	0.001	0.31	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.004	0.76	0.0	0.04	17.15	0.01	1.994	28.48	0.45	18.5	80.5	1.1	-4.42	1.71	0.79	0.64	0.68	19072	487	3	704	0	0	0	logfile
✔	6KRD	0756	2022-07-03	2019-08-21	4.38	4.25	—	4.4	0.001	0.39	0.0	0.04	7.15	0.00	2.226	5.90	0.00	4.5	95.5	0.1	-3.58	0.57	0.52	—	4.3	0.008	0.86	1.0	0.05	11.99	0.00	1.822	15.52	0.01	3.3	96.6	0.1	-0.02	1.78	0.63	0.59	—	61005	8006	16	0	0	0	0	logfile
✔	6KS8	0760	2022-07-03	2019-08-23	4.69	4.76	—	4.6	0.001	0.39	0.0	0.04	7.12	0.00	2.228	5.95	0.01	4.4	95.5	0.0	-3.61	0.77	0.67	—	4.6	0.003	0.69	0.0	0.04	11.61	0.00	2.100	15.65	0.01	3.0	97.0	0.0	-0.13	1.85	0.80	0.71	—	61943	8120	16	0	0	0	0	logfile
✘	5GW4	9540	2022-07-03	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.57	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✔	6D00	7782	2022-07-07	2018-04-09	4.0	3.65	—	3.0	0.001	0.45	0.0	0.04	9.42	0.00	2.284	4.03	0.05	6.5	92.8	0.7	-4.95	0.62	0.43	—	3.4	0.004	0.85	0.0	0.04	15.19	0.01	2.117	14.76	0.39	3.2	96.7	0.0	-0.43	1.59	0.83	0.68	—	38328	4824	12	0	12	0	0	logfile
✔	5oAF	3773	2022-07-04	2017-06-21	4.06	4.15	—	4.1	0.001	0.47	0.0	0.04	9.13	0.00	2.165	12.46	0.28	2.4	97.6	0.0	-2.75	0.69	0.67	—	4.1	0.003	0.70	0.0	0.04	12.90	0.00	2.107	13.78	0.00	4.1	95.8	0.0	-0.36	3.56	0.72	0.72	—	19748	2538	12	0	6	0	0	logfile
✔	6PM5	20388	2022-07-04	2019-07-01	3.1	3.38	—	3.4	0.001	0.42	0.0	0.06	6.80	0.00	2.275	5.10	0.00	2.4	97.6	0.0	-4.42	0.52	0.78	3.48	3.4	0.003	0.65	0.0	0.04	14.29	0.00	2.238	7.72	0.41	3.2	96.8	0.0	-0.31	1.12	0.58	0.85	3.86	13975	1735	15	0	15	0	0	logfile
✔	6XGC	22180	2022-07-04	2020-06-17	4.1	4.25	—	4.2	0.001	0.39	0.0	0.04	7.78	0.00	2.215	5.92	0.16	2.3	97.7	0.0	1.43	0.80	0.81	—	4.2	0.006	0.76	0.0	0.05	11.55	0.00	2.105	14.11	0.00	5.4	94.6	0.0	-0.51	1.33	0.82	0.84	—	17040	2157	21	0	21	0	0	logfile
✔	6X35	22018	2022-07-03	2020-05-21	4.2	4.14	—	4.2	0.001	0.37	0.0	0.03	8.42	0.00	2.202	3.52	0.05	1.8	98.1	0.0	-1.11	0.52	0.67	—	4.1	0.008	0.82	1.0	0.04	11.45	0.01	1.758	11.06	0.00	3.5	96.5	0.0	0.74	1.68	0.58	0.73	—	111888	14740	16	0	1432	0	0	logfile
✔	6HD5	0201	2022-07-03	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.52	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.003	0.73	0.0	0.04	11.96	0.00	2.138	15.29	0.00	5.4	94.5	0.1	-0.09	2.01	0.45	0.55	—	9707	1234	3	0	0	0	0	logfile
✘	6X32	22015	2022-07-04	2020-05-21	3.8	3.75	—	3.9	0.001	0.36	0.0	0.03	7.99	0.00	2.266	3.35	0.00	1.4	98.6	0.0	-3.72	0.56	0.69	2.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	114280	14744	16	0	1416	0	0	logfile
✔	6PLQ	20372	2022-07-04	2019-07-01	3.4	4.30	—	4.3	0.001	0.46	0.0	0.04	7.10	0.00	2.285	5.97	0.00	2.0	98.0	0.0	-4.40	0.57	0.36	0.62	4.0	0.014	1.11	0.0	0.05	14.48	0.01	2.108	16.00	0.52	3.8	96.2	0.0	-1.09	1.67	0.71	0.72	0.89	14240	1730	15	0	20	0	0	logfile
✔	7JLX	22383	2022-07-03	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.004	0.84	0.0	0.04	7.94	0.00	2.314	8.45	0.00	18.9	81.1	0.0	-3.03	2.40	0.47	0.53	—	3288	664	4	0	0	0	0	logfile
✔	6X34	22017	2022-07-06	2020-05-21	4.7	6.14	4.99	4.8	0.001	0.41	0.0	0.03	9.38	0.00	2.258	3.87	0.61	1.6	98.4	0.0	-2.99	0.74	0.66	—	4.8	0.003	0.65	0.0	0.04	9.64	0.00	2.095	12.85	0.00	4.0	96.0	0.0	0.40	0.92	0.80	0.80	—	97888	13956	12	0	1320	0	0	logfile
✘	6VPC	21308	2022-07-04	2020-02-03	3.2	3.51	3.17	3.2	0.002	0.55	0.0	0.04	16.93	0.00	1.331	5.95	1.58	2.2	97.8	0.0	-1.99	0.83	0.79	1.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16309	1633	9	154	5	0	0	logfile
✔	6KLH	0710	2022-07-05	2019-07-30	3.7	3.90	—	3.8	0.002	0.68	3.0	0.04	13.46	0.00	2.176	10.41	0.25	9.4	90.3	0.3	-3.61	0.78	0.74	0.87	3.8	0.003	0.80	0.0	0.04	16.02	0.00	2.086	12.67	0.32	10.1	89.7	0.1	-1.18	0.79	0.79	0.77	0.99	27569	3731	6	14	4	0	0	logfile

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