Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6X33	22016	2021-09-03	2020-05-21	4.2	4.35	—	4.3	0.001	0.37	0.0	0.03	9.39	0.00	2.304	3.19	0.00	1.9	98.1	0.0	-4.22	0.55	0.69	—	4.3	0.013	1.08	8.0	0.04	11.85	0.01	1.587	16.49	0.02	5.6	94.4	0.0	-0.71	0.72	0.58	0.73	—	112372	14796	16	0	1436	0	0	logfile
✔	6KRD	0756	2021-09-03	2019-08-21	4.38	4.25	—	4.4	0.001	0.39	0.0	0.04	7.15	0.00	2.226	5.79	0.00	4.5	95.5	0.1	-3.58	0.57	0.52	—	4.3	0.007	0.86	0.0	0.05	12.44	0.00	1.612	18.12	0.01	4.6	95.4	0.1	-0.48	3.26	0.65	0.66	—	61005	8006	16	0	0	0	0	logfile
✔	6PLP	20371	2021-09-03	2019-07-01	3.3	3.51	—	3.8	0.001	0.43	0.0	0.04	7.21	0.00	2.285	5.97	0.00	2.0	98.0	0.0	-4.40	0.44	0.72	3.32	3.6	0.003	0.63	0.0	0.04	13.63	0.01	2.085	10.07	0.39	3.0	97.0	0.0	-0.84	1.80	0.50	0.79	2.65	14240	1730	15	0	20	0	0	logfile
✔	6PLQ	20372	2021-09-03	2019-07-01	3.4	4.30	—	4.3	0.001	0.43	0.0	0.04	7.21	0.00	2.285	5.97	0.00	2.0	98.0	0.0	-4.40	0.57	0.36	0.62	3.8	0.004	0.87	0.0	0.05	14.71	0.01	2.123	13.23	0.32	4.3	95.7	0.0	-1.02	2.46	0.76	0.84	2.17	14240	1730	15	0	20	0	0	logfile
✔	6KS7	0759	2021-09-03	2019-08-23	4.62	4.57	—	4.5	0.001	0.39	0.0	0.04	7.11	0.00	2.241	5.70	0.00	4.3	95.7	0.0	-3.50	0.70	0.62	—	4.5	0.003	0.74	0.0	0.04	12.38	0.00	2.092	15.74	0.06	4.0	95.9	0.1	-0.43	2.41	0.76	0.70	—	62022	8131	16	0	0	0	0	logfile
✘	6D00	7782	2021-09-06	2018-04-09	4.0	3.65	—	3.0	0.001	0.45	0.0	0.04	9.42	0.00	2.284	3.91	0.05	6.5	92.8	0.7	-4.95	0.62	0.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38328	4824	12	0	12	0	0	logfile
✔	5N6W	3595	2021-09-06	2017-02-16	4.2	4.31	—	4.2	0.001	0.36	0.0	0.04	4.92	0.00	2.309	3.73	0.00	17.7	79.7	2.6	-5.61	0.44	0.28	—	4.2	0.028	2.04	4.0	0.05	11.63	0.01	1.888	29.56	0.17	13.8	85.3	0.8	-4.48	1.56	0.69	0.66	—	40752	2512	16	0	0	0	20032	logfile
✔	6NEQ	9358	2021-09-03	2018-12-18	3.32	3.85	—	3.5	0.001	0.37	0.0	0.03	12.81	0.00	1.949	3.27	0.35	10.3	88.1	1.6	-2.42	0.69	0.51	0.07	3.5	0.003	0.66	0.0	0.03	16.31	0.00	2.089	11.85	0.44	5.1	94.8	0.1	-0.21	2.11	0.85	0.84	1.26	65776	5509	32	952	147	0	0	logfile
✔	6HD5	0201	2021-09-03	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.003	0.76	0.0	0.04	12.33	0.00	2.149	16.76	0.00	5.8	94.1	0.1	-0.19	2.13	0.45	0.51	—	9707	1234	3	0	0	0	0	logfile
✔	6ZGG	11205	2021-09-04	2020-06-18	3.8	4.33	4.00	4.0	0.001	0.41	0.0	0.04	5.80	0.00	2.231	3.79	1.00	12.4	87.1	0.5	-2.52	0.84	0.74	0.73	4.0	0.004	0.70	0.0	0.04	11.49	0.00	2.135	10.33	0.25	5.2	94.8	0.0	-0.79	1.45	0.87	0.83	1.21	25096	3207	3	0	0	0	0	logfile
✔	6XGC	22180	2021-09-03	2020-06-17	4.1	4.25	—	4.2	0.001	0.39	0.0	0.04	7.78	0.00	2.215	5.83	0.16	2.3	97.7	0.0	1.43	0.80	0.81	—	4.2	0.004	0.68	0.0	0.04	11.59	0.00	2.197	11.78	0.05	3.5	96.5	0.0	0.01	1.34	0.82	0.83	—	17040	2157	21	0	21	0	0	logfile
✔	6X35	22018	2021-09-03	2020-05-21	4.2	4.14	—	4.2	0.001	0.37	0.0	0.03	8.42	0.00	2.202	3.37	0.05	1.8	98.1	0.0	-1.11	0.52	0.67	—	4.1	0.008	0.80	2.0	0.04	11.60	0.01	1.614	11.87	0.01	4.1	95.9	0.0	0.71	1.71	0.57	0.73	—	111888	14740	16	0	1432	0	0	logfile
✔	7JSE	22451	2021-09-03	2020-08-14	4.6	5.13	—	4.2	0.001	0.38	0.0	0.02	10.51	0.00	2.425	0.00	0.00	11.4	88.0	0.6	-2.68	0.79	0.51	—	3.8	0.007	1.12	0.0	0.09	14.79	0.00	2.151	10.99	0.00	21.9	78.1	0.0	-2.77	2.79	0.69	0.70	—	13288	3168	24	32	0	0	0	logfile
✔	7JLX	22383	2021-09-02	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.004	0.83	0.0	0.04	7.84	0.00	2.303	8.24	0.00	17.7	82.3	0.0	-3.14	2.43	0.49	0.54	—	3288	664	4	0	0	0	0	logfile
✔	6PM5	20388	2021-09-03	2019-07-01	3.1	3.38	—	3.4	0.001	0.42	0.0	0.06	6.80	0.00	2.275	5.03	0.00	2.4	97.6	0.0	-4.42	0.52	0.78	3.48	3.4	0.003	0.65	0.0	0.05	14.12	0.00	2.287	5.75	0.47	3.3	96.7	0.0	-0.20	1.12	0.57	0.85	3.95	13975	1735	15	0	15	0	0	logfile
✔	6W6K	21558	2021-09-06	2020-03-17	3.6	3.84	—	3.7	0.002	0.47	0.0	0.03	14.66	0.00	2.113	10.34	0.00	6.9	93.1	0.0	-4.28	0.70	0.59	0.52	3.7	0.009	0.95	2.0	0.04	17.44	0.01	1.759	21.55	0.30	12.3	87.6	0.1	-3.12	1.01	0.75	0.67	0.42	46934	1873	19	1534	1	0	0	logfile
✔	7ND9	12280	2021-09-05	2021-01-30	2.8	3.07	—	3.0	0.002	0.53	0.0	0.04	11.50	0.00	2.198	4.31	0.62	4.9	94.9	0.2	-0.76	0.75	0.83	2.70	3.0	0.006	0.76	0.0	0.04	14.55	0.01	1.823	7.76	1.75	3.2	96.8	0.1	0.43	1.02	0.78	0.87	2.49	27336	3482	19	0	50	0	0	logfile
✔	6XAS	22114	2021-09-06	2020-06-04	3.8	3.01	3.14	2.9	0.002	0.49	0.0	0.04	10.96	0.00	1.961	4.90	1.49	2.2	97.8	0.0	-2.00	0.62	0.55	1.72	2.9	0.005	0.69	0.0	0.04	14.77	0.00	1.842	9.40	0.22	5.0	95.0	0.0	-0.10	0.81	0.61	0.54	1.60	46887	5804	16	73	3	0	0	logfile
✔	7C77	30294	2021-09-03	2020-05-23	3.3	3.60	—	3.8	0.002	0.62	0.0	0.04	16.23	0.00	2.209	9.34	1.88	5.0	94.9	0.1	-2.63	0.58	0.75	1.54	3.8	0.005	0.83	0.0	0.05	17.41	0.01	2.187	14.86	0.94	4.9	95.1	0.0	-0.87	0.63	0.56	0.78	2.13	9762	1183	9	0	20	0	0	logfile
✔	7ADD	11724	2021-09-07	2020-09-14	4.3	7.48	—	4.2	0.002	0.56	0.0	0.05	15.19	0.00	1.993	13.08	3.45	4.2	95.8	0.0	-2.89	0.90	0.73	—	4.2	0.003	0.65	0.0	0.05	14.22	0.00	1.805	21.66	0.00	4.6	95.4	0.0	-0.33	0.83	0.96	0.88	—	51610	6330	26	89	18	15	0	logfile

• ← previous
• Page 2 of 279
• next →