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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6NF8 | 9362 | 2022-05-13 | 2018-12-19 | 3.48 | 3.99 | — | 3.6 | 0.001 | 0.39 | 0.0 | 0.03 | 12.76 | 0.00 | 1.916 | 3.14 | 0.58 | 10.4 | 88.3 | 1.3 | -2.53 | 0.76 | 0.60 | 1.16 | 3.5 | 0.003 | 0.67 | 0.0 | 0.04 | 15.68 | 0.00 | 2.019 | 12.91 | 0.19 | 5.5 | 94.5 | 0.0 | -0.34 | 2.59 | 0.84 | 0.79 | 1.23 | 65776 | 5509 | 32 | 952 | 147 | 0 | 0 | logfile |
✔ | 6HD5 | 0201 | 2022-05-13 | 2018-08-17 | 4.8 | 6.01 | — | 5.9 | 0.001 | 0.40 | 0.0 | 0.03 | 8.70 | 0.00 | 2.289 | 4.52 | 0.10 | 10.5 | 88.4 | 1.1 | -1.81 | 0.36 | 0.32 | — | 5.9 | 0.003 | 0.73 | 0.0 | 0.04 | 11.96 | 0.00 | 2.138 | 15.29 | 0.00 | 5.4 | 94.5 | 0.1 | -0.09 | 2.01 | 0.45 | 0.55 | — | 9707 | 1234 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7FiJ | 31599 | 2022-05-12 | 2021-07-31 | 3.8 | 2.32 | — | 1.8 | 0.001 | 0.41 | 0.0 | 0.04 | 8.02 | 0.00 | 2.344 | 3.95 | 0.00 | 4.1 | 95.9 | 0.0 | 1.10 | 0.58 | 0.50 | 3.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3061 | 561 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PLP | 20371 | 2022-05-13 | 2019-07-01 | 3.3 | 3.51 | — | 3.8 | 0.001 | 0.46 | 0.0 | 0.04 | 7.10 | 0.00 | 2.285 | 5.97 | 0.00 | 2.0 | 98.0 | 0.0 | -4.40 | 0.44 | 0.72 | 3.32 | 3.6 | 0.003 | 0.61 | 0.0 | 0.04 | 13.45 | 0.01 | 2.131 | 10.00 | 0.52 | 2.9 | 97.1 | 0.0 | -0.71 | 1.19 | 0.45 | 0.75 | 2.86 | 14240 | 1730 | 15 | 0 | 20 | 0 | 0 | logfile |
✔ | 6X33 | 22016 | 2022-05-13 | 2020-05-21 | 4.2 | 4.35 | — | 4.3 | 0.001 | 0.37 | 0.0 | 0.03 | 9.39 | 0.00 | 2.304 | 3.34 | 0.00 | 1.9 | 98.1 | 0.0 | -4.22 | 0.55 | 0.69 | — | 4.3 | 0.003 | 0.68 | 0.0 | 0.04 | 11.88 | 0.00 | 2.069 | 10.29 | 0.05 | 3.9 | 96.1 | 0.0 | 0.00 | 0.68 | 0.58 | 0.72 | — | 112372 | 14796 | 16 | 0 | 1436 | 0 | 0 | logfile |
✔ | 7JSH | 22454 | 2022-05-12 | 2020-08-14 | 4.4 | 7.07 | — | 17.0 | 0.001 | 0.20 | 0.0 | 0.02 | 8.81 | 0.00 | 2.581 | 0.00 | 0.00 | 13.1 | 83.7 | 3.2 | -3.27 | 0.49 | 0.25 | — | 5.3 | 0.004 | 1.19 | 0.0 | 0.04 | 13.17 | 0.00 | 1.948 | 19.40 | 0.00 | 27.4 | 72.5 | 0.2 | -5.14 | 6.11 | 0.74 | 0.62 | — | 7916 | 1904 | 8 | 15 | 0 | 0 | 0 | logfile |
✔ | 7JSE | 22451 | 2022-05-13 | 2020-08-14 | 4.6 | 5.13 | — | 4.2 | 0.001 | 0.38 | 0.0 | 0.02 | 10.51 | 0.00 | 2.425 | 0.00 | 0.00 | 11.4 | 88.0 | 0.6 | -2.68 | 0.79 | 0.50 | — | 3.8 | 0.005 | 0.96 | 0.0 | 0.08 | 14.35 | 0.00 | 2.201 | 6.17 | 0.00 | 15.6 | 84.4 | 0.0 | -2.03 | 2.71 | 0.83 | 0.74 | — | 13288 | 3168 | 24 | 32 | 0 | 0 | 0 | logfile |
✔ | 7JLX | 22383 | 2022-05-12 | 2020-07-30 | 4.6 | 3.86 | — | 3.7 | 0.001 | 0.42 | 0.0 | 0.04 | 3.80 | 0.00 | 2.240 | 2.96 | 0.00 | 6.7 | 93.3 | 0.0 | 1.23 | 0.54 | 0.51 | — | 3.8 | 0.004 | 0.84 | 0.0 | 0.04 | 7.94 | 0.00 | 2.314 | 8.45 | 0.00 | 18.9 | 81.1 | 0.0 | -3.03 | 2.40 | 0.47 | 0.53 | — | 3288 | 664 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KoD | 22972 | 2022-05-14 | 2020-11-08 | 1.655 | 2.30 | — | 1.9 | 0.001 | 0.33 | 0.0 | 0.03 | 8.49 | 0.00 | 2.288 | 0.80 | 0.00 | 1.1 | 98.9 | 0.0 | 6.14 | 0.91 | 0.91 | 8.16 | 2.0 | 0.005 | 0.49 | 0.0 | 0.04 | 13.81 | 0.00 | 1.858 | 2.53 | 0.27 | 0.6 | 99.4 | 0.0 | 5.26 | 0.58 | 0.88 | 0.94 | 8.02 | 68186 | 4128 | 48 | 0 | 0 | 1727 | 32643 | logfile |
✔ | 7EoS | 31229 | 2022-05-15 | 2021-04-22 | 3.9 | 4.43 | — | 3.9 | 0.001 | 0.40 | 0.0 | 0.04 | 9.12 | 0.00 | 2.254 | 6.57 | 1.89 | 4.1 | 95.8 | 0.1 | 0.47 | 0.88 | 0.78 | 1.32 | 4.0 | 0.004 | 0.71 | 0.0 | 0.04 | 12.91 | 0.00 | 2.114 | 15.89 | 0.27 | 6.9 | 93.1 | 0.1 | -0.55 | 2.28 | 0.91 | 0.83 | 1.42 | 24600 | 3106 | 8 | 0 | 18 | 0 | 0 | logfile |
✔ | 7SAM | 24952 | 2022-05-12 | 2021-09-22 | 4.3 | 6.95 | 4.38 | 4.2 | 0.001 | 0.39 | 0.0 | 0.02 | 13.28 | 0.00 | 1.952 | 2.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.84 | 0.51 | — | 4.3 | 0.006 | 0.88 | 0.0 | 0.04 | 22.86 | 0.01 | 1.817 | 83.53 | 0.00 | 0.0 | 0.0 | 0.0 | — | 5.89 | 0.95 | 0.86 | — | 5399 | 0 | 1 | 169 | 0 | 0 | 1802 | logfile |
✔ | 7T4M | 25680 | 2022-05-17 | 2021-12-10 | 2.48 | 2.77 | 2.55 | 2.7 | 0.001 | 0.38 | 0.0 | 0.04 | 9.69 | 0.00 | 2.253 | 4.91 | 0.97 | 1.6 | 98.4 | 0.0 | 1.34 | 0.72 | 0.86 | 4.48 | 2.7 | 0.003 | 0.50 | 0.0 | 0.04 | 12.95 | 0.00 | 2.169 | 5.73 | 0.69 | 1.4 | 98.6 | 0.0 | 1.55 | 0.90 | 0.73 | 0.88 | 3.98 | 39054 | 4854 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 5G2Y | 3332 | 2022-05-13 | 2016-04-16 | 4.5 | 4.38 | — | 3.8 | 0.001 | 0.22 | 0.0 | 0.01 | 11.90 | 0.00 | 2.269 | 2.32 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.58 | 0.28 | — | 3.7 | 0.007 | 1.01 | 0.0 | 0.05 | 23.66 | 0.01 | 1.957 | 72.02 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.26 | 0.89 | 0.78 | — | 13494 | 0 | 1 | 630 | 0 | 0 | 0 | logfile |
✔ | 7LH3 | 23335 | 2022-05-13 | 2021-01-21 | 4.3 | 4.87 | — | 4.6 | 0.001 | 0.40 | 0.0 | 0.04 | 7.88 | 0.00 | 2.258 | 4.81 | 1.06 | 1.8 | 98.2 | 0.0 | 2.29 | 0.61 | 0.73 | — | 4.6 | 0.003 | 0.65 | 0.0 | 0.04 | 10.89 | 0.00 | 2.261 | 11.45 | 0.00 | 4.2 | 95.8 | 0.0 | 1.60 | 1.12 | 0.63 | 0.82 | — | 10452 | 1360 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KRE | 0757 | 2022-05-13 | 2019-08-21 | 4.45 | 4.34 | — | 4.4 | 0.001 | 0.39 | 0.0 | 0.04 | 7.11 | 0.00 | 2.244 | 6.14 | 0.03 | 4.1 | 95.8 | 0.1 | -3.50 | 0.61 | 0.56 | — | 4.4 | 0.004 | 0.75 | 1.0 | 0.04 | 12.02 | 0.00 | 2.101 | 12.70 | 0.05 | 3.2 | 96.8 | 0.1 | 0.24 | 1.77 | 0.65 | 0.62 | — | 60321 | 7922 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6K9L | 9950 | 2022-05-16 | 2019-06-16 | 4.27 | 4.50 | — | 4.2 | 0.001 | 0.49 | 0.0 | 0.04 | 9.31 | 0.00 | 2.240 | 4.79 | 4.95 | 4.6 | 95.4 | 0.0 | -3.11 | 0.84 | 0.71 | — | 4.2 | 0.003 | 0.70 | 0.0 | 0.04 | 9.93 | 0.00 | 2.093 | 13.31 | 0.00 | 8.3 | 91.7 | 0.0 | 0.47 | 1.81 | 0.85 | 0.75 | — | 30601 | 5103 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 5GW4 | 9540 | 2022-05-13 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.57 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 7F0J | 31399 | 2022-05-13 | 2021-06-04 | 2.9 | 2.91 | 2.89 | 2.9 | 0.002 | 0.54 | 0.0 | 0.04 | 13.59 | 0.01 | 2.281 | 9.77 | 0.00 | 6.3 | 93.7 | 0.0 | 0.67 | 0.59 | 0.73 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12424 | 1544 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 7RB9 | 24400 | 2022-05-13 | 2021-07-05 | 3.76 | 4.01 | 3.83 | 3.9 | 0.002 | 0.57 | 0.0 | 0.04 | 14.64 | 0.00 | 2.228 | 9.35 | 0.00 | 3.2 | 96.8 | 0.0 | 0.60 | 0.59 | 0.85 | 1.62 | 3.9 | 0.003 | 0.63 | 0.0 | 0.04 | 15.91 | 0.00 | 1.990 | 9.49 | 0.26 | 4.4 | 95.6 | 0.0 | 0.40 | 2.15 | 0.60 | 0.87 | 2.05 | 14193 | 1786 | 7 | 0 | 6 | 0 | 0 | logfile |
✔ | 7E7Z | 31005 | 2022-05-12 | 2021-02-28 | 3.2 | 3.35 | 2.96 | 3.4 | 0.002 | 0.51 | 0.0 | 0.04 | 13.40 | 0.00 | 2.240 | 9.87 | 0.00 | 5.6 | 94.4 | 0.0 | -0.12 | 0.63 | 0.81 | 1.86 | 3.3 | 0.003 | 0.53 | 0.0 | 0.04 | 15.12 | 0.00 | 2.223 | 8.28 | 0.23 | 5.7 | 94.3 | 0.0 | 1.59 | 0.43 | 0.57 | 0.80 | 1.77 | 7808 | 992 | 4 | 0 | 0 | 0 | 0 | logfile |