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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8TEK | 41189 | 2024-03-16 | 2023-07-06 | 3.6 | 2.85 | 3.88 | 3.4 | 0.015 | 0.65 | 0.0 | 0.04 | 15.86 | 0.00 | 2.065 | 14.54 | 0.00 | 3.9 | 96.0 | 0.1 | -1.18 | 0.16 | 0.51 | 0.46 | 2.7 | 0.015 | 0.79 | 0.0 | 0.04 | 19.31 | 0.00 | 2.078 | 20.47 | 3.65 | 4.4 | 95.5 | 0.1 | -0.11 | 2.30 | 0.19 | 0.67 | 0.47 | 15250 | 1817 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6FLQ | 4275 | 2024-03-21 | 2018-01-26 | 3.6 | 3.93 | 3.76 | 40.0 | 0.016 | 1.33 | 0.0 | 0.07 | 15.27 | 0.01 | 1.897 | 5.97 | 1.40 | 10.8 | 89.1 | 0.1 | -4.32 | 0.16 | 0.02 | 0.21 | 3.7 | 0.006 | 1.01 | 1.0 | 0.05 | 17.68 | 0.01 | 1.917 | 21.67 | 3.97 | 11.5 | 88.4 | 0.1 | -1.93 | 2.09 | 0.27 | 0.21 | -0.04 | 30201 | 3868 | 10 | 91 | 3 | 0 | 0 | logfile |
✔ | 7CHH | 30374 | 2024-03-21 | 2020-07-05 | 3.49 | 2.44 | — | 20.0 | 0.007 | 1.10 | 0.0 | 0.06 | 15.26 | 0.01 | 2.182 | 4.90 | 3.56 | 5.2 | 94.7 | 0.1 | -2.03 | 0.17 | 0.02 | 0.23 | 2.3 | 0.012 | 1.29 | 1.0 | 0.06 | 16.28 | 0.01 | 1.869 | 25.43 | 2.38 | 8.1 | 91.9 | 0.0 | -2.12 | 1.44 | 0.21 | 0.14 | 0.46 | 29029 | 3704 | 17 | 0 | 41 | 0 | 0 | logfile |
✔ | 6FU8 | 4319 | 2024-03-10 | 2018-02-26 | 3.2 | 4.43 | 2.98 | 3.8 | 0.013 | 2.11 | 2.0 | 0.10 | 20.18 | 0.02 | 2.617 | 1.47 | 2.78 | 11.2 | 86.2 | 2.5 | -3.87 | 0.17 | 0.42 | 2.23 | 4.0 | 0.004 | 0.81 | 0.0 | 0.04 | 15.68 | 0.00 | 2.242 | 15.40 | 2.78 | 11.2 | 87.5 | 1.2 | -1.93 | 3.97 | 0.23 | 0.60 | -0.89 | 1364 | 82 | 1 | 0 | 0 | 0 | 711 | logfile |
✘ | 6Qi8 | 4552 | 2024-03-16 | 2019-01-18 | 3.75 | 3.92 | — | 10.4 | 0.004 | 0.91 | 0.0 | 0.05 | 16.35 | 0.01 | 1.999 | 4.27 | 0.19 | 5.5 | 94.5 | 0.0 | -5.84 | 0.17 | 0.02 | 0.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14789 | 1907 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 7YKS | 33896 | 2024-03-17 | 2022-07-23 | 3.0 | 3.20 | 3.06 | 4.7 | 0.008 | 1.00 | 0.0 | 0.06 | 10.27 | 0.01 | 2.291 | 4.01 | 0.00 | 6.7 | 93.1 | 0.2 | -6.58 | 0.17 | 0.11 | -0.18 | 3.2 | 0.004 | 0.93 | 2.0 | 0.04 | 16.76 | 0.01 | 2.171 | 10.38 | 1.00 | 4.8 | 95.2 | 0.0 | -0.98 | 2.24 | 0.59 | 0.80 | 1.81 | 18984 | 2364 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CK0 | 16688 | 2024-03-10 | 2023-02-14 | 3.8 | 3.83 | 3.70 | 3.8 | 0.005 | 0.80 | 0.0 | 0.05 | 16.63 | 0.01 | 2.259 | 15.81 | 0.00 | 5.3 | 94.7 | 0.0 | 0.79 | 0.17 | 0.78 | 1.47 | 3.8 | 0.003 | 0.65 | 0.0 | 0.04 | 17.84 | 0.00 | 2.287 | 11.79 | 3.38 | 3.8 | 96.2 | 0.0 | 2.14 | 0.70 | 0.18 | 0.78 | 1.72 | 3762 | 478 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ASK | 11895 | 2024-03-15 | 2020-10-27 | 4.3 | 4.39 | — | 4.3 | 0.028 | 2.99 | 47.0 | 0.22 | 18.83 | 0.02 | 0.766 | 14.21 | 2.58 | 16.8 | 73.5 | 9.7 | -6.06 | 0.17 | 0.51 | — | 4.3 | 0.015 | 1.13 | 2.0 | 0.05 | 15.40 | 0.01 | 2.076 | 16.90 | 0.00 | 18.4 | 80.1 | 1.5 | -3.44 | 1.30 | 0.18 | 0.61 | — | 12285 | 1523 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 8JoU | 36462 | 2024-03-12 | 2023-06-08 | 4.1 | 6.13 | 3.95 | 3.9 | 0.004 | 0.83 | 0.0 | 0.05 | 12.09 | 0.01 | 0.759 | 16.82 | 0.49 | 7.7 | 90.4 | 1.9 | -1.54 | 0.17 | 0.37 | — | 3.1 | 0.003 | 0.69 | 0.0 | 0.04 | 11.93 | 0.00 | 2.055 | 23.73 | 0.08 | 8.5 | 89.8 | 1.7 | -1.53 | 1.41 | 0.23 | 0.86 | — | 62425 | 8135 | 70 | 0 | 590 | 0 | 0 | logfile |
✔ | 8D43 | 27173 | 2024-03-11 | 2022-06-01 | 2.88 | 3.12 | 2.94 | 5.9 | 0.004 | 0.84 | 1.0 | 0.06 | 19.69 | 0.01 | 1.371 | 8.43 | 5.48 | 6.5 | 93.5 | 0.0 | -1.48 | 0.17 | -0.02 | 0.37 | 3.1 | 0.005 | 0.96 | 0.0 | 0.05 | 18.05 | 0.01 | 2.138 | 24.30 | 3.34 | 9.0 | 90.8 | 0.2 | -1.78 | 2.71 | 0.42 | 0.37 | 0.91 | 7763 | 962 | 5 | 0 | 6 | 1 | 0 | logfile |
✘ | 8EAo | 27792 | 2024-03-16 | 2022-08-29 | 3.2 | 4.04 | 3.15 | 20.0 | 0.003 | 0.60 | 0.0 | 0.05 | 14.09 | 0.00 | 2.197 | 10.56 | 0.10 | 3.6 | 96.4 | 0.0 | 1.03 | 0.18 | 0.04 | -0.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71628 | 8964 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Z5U | 11082 | 2024-03-17 | 2020-05-27 | 3.9 | 4.52 | — | 38.0 | 0.021 | 1.88 | 10.0 | 0.11 | 12.69 | 0.01 | 0.901 | 4.89 | 1.69 | 2.0 | 97.7 | 0.3 | -0.47 | 0.18 | 0.03 | -0.06 | 4.5 | 0.003 | 0.74 | 0.0 | 0.04 | 14.85 | 0.00 | 1.975 | 14.50 | 1.99 | 5.6 | 94.4 | 0.0 | -0.84 | 1.64 | 0.30 | 0.20 | 0.61 | 17880 | 2334 | 14 | 0 | 4 | 0 | 0 | logfile |
✔ | 8iEN | 35387 | 2024-03-11 | 2023-02-15 | 3.25 | 3.66 | 3.30 | 7.2 | 0.004 | 1.21 | 0.0 | 0.04 | 14.04 | 0.00 | 2.168 | 8.43 | 0.24 | 5.0 | 94.9 | 0.1 | -2.18 | 0.18 | 0.00 | -0.05 | 3.5 | 0.003 | 1.04 | 0.0 | 0.04 | 16.13 | 0.01 | 2.094 | 16.86 | 1.18 | 8.4 | 91.6 | 0.0 | -1.45 | 1.69 | 0.35 | 0.28 | 0.69 | 7678 | 991 | 2 | 0 | 4 | 0 | 0 | logfile |
✔ | 8UoP | 42435 | 2024-03-15 | 2023-10-20 | 3.8 | 3.97 | 3.89 | 3.8 | 0.005 | 0.91 | 0.0 | 0.04 | 16.45 | 0.01 | 1.954 | 17.97 | 0.73 | 15.7 | 83.6 | 0.7 | -3.60 | 0.18 | 0.15 | 0.40 | 3.9 | 0.003 | 0.64 | 0.0 | 0.04 | 17.20 | 0.00 | 1.949 | 14.94 | 4.40 | 11.8 | 87.9 | 0.3 | -3.15 | 0.92 | 0.24 | 0.24 | 0.27 | 13188 | 872 | 2 | 0 | 0 | 0 | 6544 | logfile |
✔ | 5A8L | 3099 | 2024-03-15 | 2015-07-16 | 3.8 | 3.60 | — | 3.5 | 0.004 | 0.67 | 0.0 | 0.02 | 21.13 | 0.00 | 1.435 | 8.96 | 0.95 | 10.3 | 86.8 | 2.9 | -2.06 | 0.18 | 0.43 | 0.47 | 3.5 | 0.005 | 0.85 | 0.0 | 0.04 | 23.10 | 0.01 | 2.082 | 20.16 | 3.98 | 11.9 | 87.3 | 0.8 | -2.35 | 1.86 | 0.23 | 0.63 | 0.31 | 12264 | 624 | 9 | 347 | 0 | 0 | 0 | logfile |
✔ | 5TC1 | 8397 | 2024-03-16 | 2016-09-13 | 3.6 | 3.60 | — | 3.6 | 0.006 | 0.87 | 0.0 | 0.08 | 22.12 | 0.01 | 1.126 | 33.79 | 0.27 | 3.3 | 96.7 | 0.0 | -3.80 | 0.19 | 0.77 | 4.30 | 3.6 | 0.004 | 0.60 | 0.0 | 0.04 | 20.86 | 0.00 | 2.114 | 7.65 | 3.66 | 4.0 | 96.0 | 0.0 | -0.50 | 0.67 | 0.21 | 0.84 | 2.93 | 15393 | 1352 | 10 | 242 | 0 | 0 | 0 | logfile |
✔ | 8ACC | 15346 | 2024-03-10 | 2022-07-05 | 2.9 | 3.30 | 2.80 | 3.3 | 0.002 | 0.70 | 0.0 | 0.05 | 13.62 | 0.00 | 2.200 | 6.25 | 0.00 | 11.4 | 86.5 | 2.2 | -2.46 | 0.20 | 0.81 | 4.38 | 3.3 | 0.003 | 0.62 | 0.0 | 0.04 | 17.49 | 0.00 | 2.230 | 5.95 | 3.29 | 10.9 | 88.2 | 0.9 | -1.53 | 0.63 | 0.20 | 0.83 | 3.08 | 1779 | 231 | 2 | 5 | 0 | 0 | 0 | logfile |
✔ | 8B6Z | 15893 | 2024-03-10 | 2022-09-27 | 2.9 | 3.26 | 3.37 | 2.8 | 0.002 | 0.51 | 0.0 | 0.04 | 12.07 | 0.00 | 2.286 | 0.59 | 0.27 | 1.4 | 98.6 | 0.0 | -0.69 | 0.20 | 0.56 | 1.62 | 2.8 | 0.003 | 0.68 | 0.0 | 0.05 | 15.17 | 0.01 | 2.178 | 8.53 | 1.07 | 3.6 | 96.4 | 0.0 | -0.18 | 1.05 | 0.23 | 0.76 | 1.77 | 3581 | 442 | 2 | 8 | 0 | 0 | 0 | logfile |
✔ | 6EU1 | 3956 | 2024-03-24 | 2017-10-27 | 3.4 | 3.40 | — | 6.6 | 0.005 | 1.14 | 0.0 | 0.06 | 13.02 | 0.01 | 1.732 | 6.52 | 0.50 | 16.1 | 83.5 | 0.4 | -5.70 | 0.20 | 0.01 | 0.29 | 3.4 | 0.009 | 1.12 | 3.0 | 0.06 | 16.74 | 0.01 | 1.632 | 25.08 | 2.23 | 17.0 | 82.7 | 0.3 | -3.97 | 1.80 | 0.61 | 0.59 | 0.63 | 40547 | 5012 | 24 | 43 | 7 | 0 | 0 | logfile |
✔ | 5GAK | 3227 | 2024-03-15 | 2015-12-09 | 3.88 | 4.13 | — | 19.0 | 0.006 | 0.94 | 0.0 | 0.06 | 25.75 | 0.01 | 0.816 | 23.89 | 0.26 | 9.2 | 90.2 | 0.7 | -3.81 | 0.21 | 0.02 | 0.28 | 3.9 | 0.003 | 0.77 | 0.0 | 0.04 | 24.43 | 0.00 | 1.986 | 20.92 | 2.20 | 8.8 | 90.9 | 0.4 | -2.53 | 1.95 | 0.33 | 0.23 | 0.18 | 128975 | 6434 | 50 | 3597 | 234 | 0 | 0 | logfile |