The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6EU3 | 3958 | 2022-12-20 | 2017-10-27 | 3.3 | 3.38 | — | 6.0 | 0.004 | 1.06 | 0.0 | 0.06 | 11.41 | 0.01 | 1.167 | 5.10 | 0.26 | 12.9 | 86.6 | 0.5 | -5.18 | 0.23 | 0.03 | 0.17 | 3.3 | 0.003 | 0.84 | 0.0 | 0.05 | 15.81 | 0.00 | 1.912 | 14.56 | 0.40 | 11.7 | 88.0 | 0.3 | -2.66 | 1.63 | 0.62 | 0.61 | 0.65 | 38330 | 4825 | 22 | 0 | 7 | 0 | 0 | logfile |
✔ | 5VZL | 8749 | 2022-12-13 | 2017-05-29 | 3.9 | 4.38 | — | 19.0 | 0.006 | 0.96 | 0.0 | 0.05 | 14.28 | 0.01 | 2.216 | 7.76 | 0.25 | 8.4 | 91.6 | 0.0 | -4.13 | 0.31 | 0.03 | -0.03 | 17.0 | 0.003 | 0.68 | 0.0 | 0.04 | 15.78 | 0.00 | 1.238 | 14.34 | 0.50 | 5.8 | 94.2 | 0.0 | -1.59 | 1.27 | 0.39 | 0.19 | 0.68 | 13915 | 1451 | 3 | 115 | 1 | 0 | 0 | logfile |
✔ | 6Z5U | 11082 | 2022-12-13 | 2020-05-27 | 3.9 | 4.52 | — | 38.0 | 0.021 | 1.88 | 10.0 | 0.11 | 11.91 | 0.01 | 0.901 | 4.94 | 1.69 | 2.0 | 97.7 | 0.3 | -0.47 | 0.18 | 0.03 | -0.06 | 4.5 | 0.003 | 0.76 | 0.0 | 0.04 | 14.53 | 0.00 | 1.928 | 14.28 | 0.41 | 5.2 | 94.8 | 0.0 | -0.62 | 1.59 | 0.29 | 0.18 | 0.56 | 17880 | 2334 | 14 | 0 | 4 | 0 | 0 | logfile |
✔ | 6REU | 4857 | 2022-12-18 | 2019-04-12 | 4.2 | 4.32 | 4.74 | 30.0 | 0.006 | 0.99 | 0.0 | 0.06 | 15.07 | 0.01 | 1.681 | 9.47 | 0.42 | 5.7 | 94.1 | 0.1 | -4.88 | 0.21 | 0.03 | — | 30.0 | 0.003 | 0.77 | 0.0 | 0.05 | 13.96 | 0.00 | 1.871 | 17.84 | 0.00 | 6.1 | 93.8 | 0.1 | -1.72 | 1.51 | 0.26 | 0.17 | — | 33899 | 4503 | 25 | 0 | 10 | 0 | 0 | logfile |
✔ | 5M6S | 3451 | 2022-12-11 | 2016-10-25 | 4.8 | 5.27 | — | 6.5 | 0.005 | 0.84 | 0.0 | 0.04 | 27.97 | 0.00 | 2.447 | 24.50 | 44.05 | 7.3 | 89.6 | 3.1 | -5.37 | 0.01 | 0.04 | — | 5.3 | 0.003 | 0.59 | 0.0 | 0.03 | 18.68 | 0.00 | 2.007 | 8.17 | 0.00 | 5.2 | 94.8 | 0.0 | 2.82 | 2.46 | 0.03 | 0.06 | — | 1593 | 98 | 1 | 0 | 0 | 0 | 793 | logfile |
✔ | 6EU2 | 3957 | 2022-12-20 | 2017-10-27 | 3.4 | 3.45 | — | 6.0 | 0.004 | 1.04 | 0.0 | 0.06 | 11.35 | 0.01 | 1.787 | 5.07 | 0.40 | 13.0 | 86.5 | 0.5 | -5.22 | 0.27 | 0.04 | 0.18 | 3.4 | 0.006 | 1.12 | 0.0 | 0.06 | 15.75 | 0.01 | 1.981 | 21.10 | 1.13 | 13.5 | 86.0 | 0.5 | -3.25 | 1.81 | 0.67 | 0.67 | 0.69 | 38329 | 4825 | 22 | 0 | 7 | 0 | 0 | logfile |
✔ | 7V66 | 31736 | 2022-12-18 | 2021-08-19 | 1.89 | 1.85 | — | 5.2 | 0.006 | 1.02 | 0.0 | 0.07 | 12.14 | 0.01 | 1.929 | 1.95 | 2.07 | 1.9 | 98.0 | 0.0 | 1.97 | 0.09 | 0.05 | 1.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33216 | 4128 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PC2 | 13316 | 2022-12-15 | 2021-08-03 | 2.8 | 3.39 | — | 6.5 | 0.033 | 1.53 | 5.0 | 0.05 | 15.16 | 0.01 | 1.809 | 9.01 | 1.49 | 7.8 | 92.2 | 0.0 | -3.81 | 0.43 | 0.05 | -0.14 | 3.1 | 0.011 | 0.95 | 0.0 | 0.05 | 16.36 | 0.01 | 2.036 | 16.86 | 2.94 | 6.3 | 93.7 | 0.0 | -1.20 | 1.45 | 0.59 | 0.38 | 0.38 | 27063 | 3093 | 68 | 0 | 210 | 0 | 0 | logfile |
✔ | 6H5i | 0140 | 2022-12-11 | 2018-07-24 | 3.9 | 3.87 | — | 23.0 | 0.006 | 0.81 | 0.0 | 0.05 | 10.47 | 0.01 | 2.196 | 2.64 | 0.17 | 4.3 | 95.7 | 0.0 | -1.74 | 0.29 | 0.06 | 0.15 | 3.8 | 0.003 | 0.70 | 0.0 | 0.04 | 15.15 | 0.00 | 2.076 | 14.87 | 0.34 | 4.1 | 95.9 | 0.0 | 1.09 | 1.96 | 0.38 | 0.25 | 0.14 | 43900 | 5392 | 26 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TQM | 10555 | 2022-12-20 | 2019-12-16 | 3.8 | 4.34 | 3.78 | 20.0 | 0.014 | 0.98 | 0.0 | 0.12 | 15.01 | 0.01 | 2.083 | 4.06 | 1.40 | 14.5 | 85.5 | 0.0 | -5.95 | 0.30 | 0.07 | 0.30 | 3.9 | 0.003 | 0.76 | 0.0 | 0.04 | 16.03 | 0.00 | 1.930 | 15.53 | 0.24 | 9.8 | 90.2 | 0.0 | -3.51 | 1.31 | 0.38 | 0.25 | 0.49 | 39616 | 2578 | 6 | 0 | 4 | 0 | 19804 | logfile |
✔ | 6LTJ | 0974 | 2022-12-18 | 2020-01-22 | 3.7 | 4.16 | — | 15.0 | 0.010 | 1.08 | 12.0 | 0.07 | 22.08 | 0.01 | 2.173 | 14.06 | 2.63 | 6.4 | 93.3 | 0.3 | -3.67 | 0.46 | 0.08 | 0.04 | 10.0 | 0.003 | 0.75 | 0.0 | 0.04 | 22.18 | 0.00 | 2.125 | 17.36 | 0.22 | 3.7 | 96.3 | 0.0 | 0.01 | 1.54 | 0.58 | 0.25 | 0.32 | 34283 | 3656 | 21 | 238 | 1 | 0 | 0 | logfile |
✘ | 6RBE | 4795 | 2022-12-19 | 2019-04-10 | 3.8 | 3.81 | 4.03 | 5.1 | 0.007 | 1.27 | 0.0 | 0.06 | 18.44 | 0.01 | 2.076 | 9.23 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.38 | 0.09 | 0.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✔ | 7W6P | 32331 | 2022-12-12 | 2021-12-02 | 3.47 | 3.79 | — | 9.6 | 0.004 | 0.69 | 0.0 | 0.04 | 13.77 | 0.00 | 2.196 | 14.90 | 0.11 | 7.0 | 93.0 | 0.0 | -0.94 | 0.22 | 0.11 | 0.18 | 9.2 | 0.002 | 0.63 | 0.0 | 0.04 | 15.18 | 0.00 | 2.193 | 12.74 | 0.22 | 4.7 | 95.3 | 0.0 | -0.44 | 1.88 | 0.29 | 0.20 | 0.86 | 8408 | 1083 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 6C9Y | 7438 | 2022-12-18 | 2018-01-29 | 4.25 | 4.33 | — | 9.7 | 0.008 | 1.53 | 5.0 | 0.08 | 13.66 | 0.01 | 2.064 | 6.66 | 5.32 | 7.8 | 90.7 | 1.5 | -4.02 | 0.50 | 0.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28920 | 3685 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 6H05 | 0108 | 2022-12-21 | 2018-07-06 | 2.9 | 3.15 | — | 3.5 | 0.016 | 1.09 | 0.0 | 0.07 | 9.74 | 0.01 | 0.426 | 17.81 | 0.00 | 8.5 | 91.5 | 0.0 | -5.50 | 0.36 | 0.13 | 0.50 | 3.1 | 0.003 | 0.86 | 0.0 | 0.04 | 15.56 | 0.00 | 2.134 | 15.94 | 2.28 | 4.3 | 95.7 | 0.0 | -1.34 | 1.63 | 0.58 | 0.47 | 0.65 | 44544 | 5664 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 5o9G | 3765 | 2022-12-14 | 2017-06-19 | 4.8 | 5.07 | 4.71 | 10.4 | 0.003 | 0.48 | 0.0 | 0.03 | 22.47 | 0.00 | 2.194 | 7.47 | 0.36 | 9.1 | 90.8 | 0.1 | -4.25 | 0.51 | 0.13 | — | 4.8 | 0.004 | 0.75 | 0.0 | 0.04 | 24.23 | 0.00 | 1.283 | 21.14 | 0.00 | 5.0 | 94.9 | 0.1 | -1.25 | 2.84 | 0.84 | 0.72 | — | 19681 | 1610 | 11 | 324 | 2 | 0 | 0 | logfile |
✔ | 5M5H | 4155 | 2022-12-11 | 2016-10-21 | 4.5 | 2.29 | — | 2.2 | 0.007 | 1.50 | 0.0 | 0.08 | 12.37 | 0.01 | 2.186 | 39.89 | 0.00 | 8.7 | 88.9 | 2.4 | -5.94 | 0.14 | 0.14 | — | 2.1 | 0.004 | 0.94 | 0.0 | 0.05 | 12.39 | 0.01 | 2.260 | 21.55 | 0.00 | 7.9 | 92.1 | 0.0 | -1.85 | 2.19 | 0.15 | 0.14 | — | 1086 | 132 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5WVE | 6690 | 2022-12-15 | 2016-12-24 | 4.4 | 4.90 | — | 5.1 | 0.008 | 1.34 | 7.0 | 0.08 | 19.34 | 0.01 | 1.493 | 69.21 | 16.86 | 7.1 | 89.5 | 3.4 | -0.75 | 0.49 | 0.15 | — | 4.5 | 0.003 | 0.81 | 0.0 | 0.04 | 13.48 | 0.00 | 1.820 | 22.98 | 0.01 | 7.4 | 91.9 | 0.7 | -1.81 | 1.59 | 0.80 | 0.60 | — | 78605 | 9766 | 39 | 0 | 21 | 0 | 0 | logfile |
✔ | 6CAJ | 7442 | 2022-12-15 | 2018-01-31 | 2.8 | 2.84 | — | 4.2 | 0.008 | 0.88 | 0.0 | 0.17 | 9.84 | 0.01 | 1.467 | 6.13 | 0.24 | 4.5 | 95.5 | 0.0 | -3.63 | 0.33 | 0.15 | 2.28 | 2.9 | 0.004 | 0.68 | 0.0 | 0.05 | 16.35 | 0.00 | 2.148 | 11.48 | 3.19 | 5.3 | 94.7 | 0.0 | -0.20 | 1.20 | 0.75 | 0.84 | 2.89 | 24295 | 3210 | 11 | 0 | 1 | 0 | 0 | logfile |
✔ | 5NV3 | 3699 | 2022-12-20 | 2017-05-03 | 3.39 | 3.43 | — | 3.4 | 0.007 | 1.22 | 2.0 | 0.07 | 14.59 | 0.00 | 2.164 | 2.84 | 0.94 | 5.6 | 94.2 | 0.2 | -2.82 | 0.09 | 0.16 | 3.78 | 3.4 | 0.003 | 0.58 | 0.0 | 0.04 | 16.10 | 0.00 | 1.960 | 8.64 | 0.25 | 3.1 | 96.9 | 0.0 | -0.13 | 1.63 | 0.60 | 0.75 | 3.92 | 37816 | 4768 | 24 | 0 | 16 | 0 | 0 | logfile |