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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8GWE | 34310 | 2023-04-26 | 2022-09-16 | 2.66 | 3.19 | 2.77 | 16.0 | 0.009 | 0.97 | 5.0 | 0.06 | 17.61 | 0.01 | 1.065 | 13.66 | 5.00 | 8.4 | 91.2 | 0.3 | -1.93 | 0.39 | 0.09 | 0.45 | 10.1 | 0.003 | 0.74 | 0.0 | 0.04 | 17.58 | 0.00 | 1.950 | 15.89 | 3.34 | 8.5 | 91.3 | 0.2 | -1.91 | 1.11 | 0.44 | 0.22 | 0.12 | 22040 | 2668 | 15 | 56 | 10 | 1 | 0 | logfile |
✔ | 7EGC | 31112 | 2023-04-21 | 2021-03-24 | 3.9 | 3.72 | — | 4.9 | 0.008 | 1.13 | 76.0 | 0.08 | 15.43 | 0.01 | 1.402 | 24.31 | 3.39 | 7.3 | 91.9 | 0.8 | -3.59 | 0.43 | 0.10 | 0.10 | 3.1 | 0.004 | 0.81 | 0.0 | 0.05 | 16.66 | 0.00 | 1.986 | 17.27 | 0.40 | 6.5 | 93.4 | 0.2 | -0.77 | 1.26 | 0.51 | 0.32 | 0.51 | 113129 | 13879 | 63 | 142 | 18 | 0 | 0 | logfile |
✔ | 7W6P | 32331 | 2023-04-20 | 2021-12-02 | 3.47 | 3.79 | — | 9.6 | 0.004 | 0.70 | 0.0 | 0.04 | 13.78 | 0.00 | 2.196 | 14.60 | 0.11 | 7.0 | 93.0 | 0.0 | -0.94 | 0.22 | 0.11 | 0.18 | 8.7 | 0.003 | 0.68 | 0.0 | 0.04 | 15.37 | 0.00 | 2.199 | 14.66 | 0.44 | 5.7 | 94.3 | 0.0 | -0.83 | 1.94 | 0.31 | 0.25 | 0.54 | 8408 | 1083 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 6C9Y | 7438 | 2023-04-28 | 2018-01-29 | 4.25 | 4.33 | — | 9.7 | 0.008 | 1.53 | 5.0 | 0.08 | 13.66 | 0.01 | 2.064 | 6.62 | 5.32 | 7.8 | 90.7 | 1.5 | -4.02 | 0.50 | 0.12 | — | 4.1 | 0.004 | 0.84 | 0.0 | 0.05 | 13.56 | 0.01 | 2.096 | 20.48 | 0.06 | 6.8 | 93.1 | 0.1 | -1.47 | 2.40 | 0.61 | 0.38 | — | 28920 | 3685 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 5o9G | 3765 | 2023-04-25 | 2017-06-19 | 4.8 | 5.07 | 4.71 | 10.4 | 0.003 | 0.48 | 0.0 | 0.03 | 22.47 | 0.00 | 2.194 | 7.39 | 0.36 | 9.1 | 90.8 | 0.1 | -4.25 | 0.51 | 0.13 | — | 4.8 | 0.004 | 0.80 | 0.0 | 0.04 | 24.58 | 0.01 | 1.106 | 18.06 | 0.00 | 4.4 | 95.5 | 0.1 | -1.54 | 2.61 | 0.86 | 0.77 | — | 19681 | 1610 | 11 | 324 | 2 | 0 | 0 | logfile |
✔ | 5M5H | 4155 | 2023-04-19 | 2016-10-21 | 4.5 | 2.29 | — | 2.2 | 0.007 | 1.50 | 0.0 | 0.08 | 12.37 | 0.01 | 2.186 | 39.89 | 0.00 | 8.7 | 88.9 | 2.4 | -5.94 | 0.14 | 0.14 | — | 2.1 | 0.004 | 0.89 | 0.0 | 0.05 | 12.67 | 0.01 | 2.275 | 23.84 | 0.00 | 8.7 | 91.3 | 0.0 | -1.45 | 2.20 | 0.15 | 0.14 | — | 1086 | 132 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CAJ | 7442 | 2023-04-27 | 2018-01-31 | 2.8 | 2.84 | — | 4.2 | 0.008 | 0.88 | 0.0 | 0.17 | 9.84 | 0.01 | 1.467 | 5.88 | 0.24 | 4.5 | 95.5 | 0.0 | -3.63 | 0.33 | 0.15 | 2.28 | 2.9 | 0.004 | 0.69 | 0.0 | 0.04 | 16.38 | 0.00 | 2.142 | 11.46 | 2.76 | 5.1 | 94.9 | 0.0 | -0.19 | 1.21 | 0.75 | 0.85 | 2.84 | 24295 | 3210 | 11 | 0 | 1 | 0 | 0 | logfile |
✘ | 5WVE | 6690 | 2023-04-29 | 2016-12-24 | 4.4 | 4.90 | — | 5.1 | 0.008 | 1.34 | 7.0 | 0.08 | 19.34 | 0.01 | 1.493 | 69.05 | 16.86 | 7.1 | 89.5 | 3.4 | -0.75 | 0.49 | 0.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 78605 | 9766 | 39 | 0 | 21 | 0 | 0 | logfile |
✔ | 8GWG | 34312 | 2023-04-26 | 2022-09-17 | 3.37 | 3.96 | 3.48 | 7.9 | 0.009 | 0.94 | 5.0 | 0.06 | 17.82 | 0.01 | 2.045 | 13.54 | 5.14 | 8.4 | 91.2 | 0.4 | -1.94 | 0.59 | 0.16 | -0.05 | 3.5 | 0.004 | 0.85 | 0.0 | 0.04 | 17.35 | 0.01 | 2.073 | 20.41 | 0.70 | 8.6 | 91.2 | 0.2 | -2.15 | 1.82 | 0.77 | 0.63 | 0.57 | 21955 | 2668 | 13 | 52 | 9 | 1 | 0 | logfile |
✔ | 6CRZ | 7577 | 2023-04-27 | 2018-03-19 | 3.3 | 3.42 | 3.35 | 4.5 | 0.007 | 1.01 | 0.0 | 0.06 | 9.26 | 0.01 | 2.254 | 6.77 | 0.04 | 7.8 | 92.2 | 0.0 | -4.10 | 0.39 | 0.17 | 0.01 | 3.3 | 0.004 | 0.75 | 0.0 | 0.05 | 13.80 | 0.00 | 2.093 | 12.74 | 0.58 | 6.4 | 93.6 | 0.0 | -1.78 | 1.50 | 0.62 | 0.59 | 0.81 | 25909 | 3205 | 25 | 0 | 66 | 0 | 0 | logfile |
✔ | 7NK1 | 12428 | 2023-04-28 | 2021-02-17 | 4.22 | 4.30 | — | 4.0 | 0.004 | 0.69 | 0.0 | 0.04 | 13.56 | 0.01 | 1.907 | 9.03 | 0.19 | 4.3 | 95.7 | 0.0 | -0.71 | 0.46 | 0.19 | — | 4.4 | 0.004 | 0.68 | 0.0 | 0.04 | 14.15 | 0.00 | 1.835 | 21.74 | 0.00 | 6.8 | 93.2 | 0.0 | -1.16 | 1.62 | 0.62 | 0.41 | — | 28747 | 1791 | 6 | 23 | 0 | 0 | 13868 | logfile |
✘ | 6MN7 | 9166 | 2023-04-25 | 2018-10-01 | 4.8 | 5.01 | — | 5.0 | 0.016 | 2.23 | 12.0 | 0.12 | 10.62 | 0.02 | 1.395 | 35.74 | 0.57 | 8.6 | 89.4 | 2.0 | -2.34 | 0.50 | 0.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21447 | 2418 | 66 | 0 | 192 | 0 | 0 | logfile |
✔ | 7APK | 11857 | 2023-04-27 | 2020-10-17 | 3.3 | 3.26 | — | 3.5 | 0.004 | 0.81 | 0.0 | 0.05 | 8.50 | 0.01 | 2.256 | 4.07 | 0.10 | 4.7 | 95.2 | 0.1 | -2.73 | 0.41 | 0.22 | 0.13 | 2.9 | 0.007 | 0.80 | 0.0 | 0.04 | 13.05 | 0.00 | 2.079 | 13.91 | 0.12 | 6.6 | 93.3 | 0.1 | 0.97 | 1.14 | 0.50 | 0.44 | 0.92 | 72697 | 9893 | 30 | 0 | 74 | 0 | 0 | logfile |
✔ | 7LJ3 | 23388 | 2023-04-27 | 2021-01-28 | 2.9 | 2.92 | — | 3.4 | 0.005 | 0.72 | 0.0 | 0.04 | 17.12 | 0.00 | 1.041 | 27.61 | 3.30 | 3.6 | 96.0 | 0.4 | 0.29 | 0.10 | 0.23 | -0.14 | 2.9 | 0.003 | 0.60 | 0.0 | 0.03 | 19.24 | 0.00 | 2.017 | 7.67 | 4.04 | 4.5 | 95.4 | 0.2 | 2.58 | 1.42 | 0.22 | 0.79 | 1.76 | 25714 | 2564 | 12 | 225 | 0 | 0 | 0 | logfile |
✔ | 7oTi | 13060 | 2023-04-21 | 2021-06-10 | 4.2 | 4.80 | — | 7.9 | 0.014 | 1.99 | 12.0 | 0.10 | 16.95 | 0.02 | 2.507 | 0.59 | 4.71 | 10.8 | 87.9 | 1.4 | -3.63 | 0.36 | 0.23 | — | 4.9 | 0.003 | 0.86 | 0.0 | 0.04 | 14.40 | 0.00 | 2.119 | 20.52 | 0.00 | 7.2 | 92.3 | 0.5 | -1.27 | 1.77 | 0.52 | 0.51 | — | 9171 | 1182 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Q2o | 20576 | 2023-04-23 | 2019-08-08 | 3.65 | 3.77 | — | 3.9 | 0.004 | 0.79 | 0.0 | 0.05 | 8.40 | 0.01 | 1.534 | 3.25 | 0.12 | 5.6 | 94.4 | 0.0 | -3.75 | 0.48 | 0.23 | 0.05 | 3.6 | 0.006 | 0.95 | 0.0 | 0.05 | 15.06 | 0.01 | 2.101 | 21.20 | 0.78 | 9.2 | 90.8 | 0.1 | -2.53 | 1.99 | 0.69 | 0.66 | 0.60 | 15196 | 1900 | 8 | 0 | 20 | 0 | 0 | logfile |
✔ | 7DZW | 30915 | 2023-04-22 | 2021-01-26 | 3.45 | 4.19 | 3.55 | 3.3 | 0.019 | 2.27 | 0.0 | 0.00 | 4.81 | 0.01 | 2.240 | 2.28 | 0.00 | 5.1 | 93.3 | 1.6 | -1.27 | 0.44 | 0.25 | — | 3.3 | 0.003 | 0.81 | 0.0 | 0.00 | 4.68 | 0.00 | 2.178 | 3.51 | 0.00 | 11.9 | 88.0 | 0.1 | -2.05 | 1.99 | 0.77 | 0.73 | — | 13452 | 3363 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JSH | 22454 | 2023-04-20 | 2020-08-14 | 4.4 | 7.07 | — | 17.0 | 0.001 | 0.20 | 0.0 | 0.02 | 8.81 | 0.00 | 2.581 | 0.00 | 0.00 | 13.1 | 83.7 | 3.2 | -3.27 | 0.49 | 0.25 | — | 5.3 | 0.005 | 1.30 | 0.0 | 0.05 | 13.69 | 0.01 | 1.942 | 27.17 | 0.00 | 31.8 | 67.9 | 0.3 | -5.48 | 6.11 | 0.73 | 0.61 | — | 7916 | 1904 | 8 | 15 | 0 | 0 | 0 | logfile |
✔ | 7BZX | 30262 | 2023-04-20 | 2020-04-28 | 4.0 | 4.19 | — | 3.2 | 0.019 | 2.22 | 9.0 | 0.12 | 8.56 | 0.01 | 2.485 | 2.40 | 0.00 | 6.6 | 92.1 | 1.3 | -2.90 | 0.47 | 0.25 | — | 2.8 | 0.006 | 1.18 | 0.0 | 0.05 | 9.20 | 0.01 | 2.035 | 27.91 | 0.00 | 24.1 | 75.8 | 0.1 | -4.93 | 2.97 | 0.75 | 0.58 | — | 5652 | 1154 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oLE | 12979 | 2023-04-28 | 2021-05-19 | 3.41 | 4.34 | 3.59 | 3.9 | 0.013 | 1.74 | 25.0 | 0.10 | 15.12 | 0.01 | 1.371 | 42.05 | 0.38 | 17.2 | 81.9 | 0.8 | -5.68 | 0.55 | 0.26 | -0.19 | 3.6 | 0.005 | 0.85 | 0.0 | 0.04 | 15.96 | 0.00 | 2.067 | 24.45 | 0.57 | 11.8 | 88.0 | 0.2 | -2.00 | 1.97 | 0.76 | 0.74 | 0.66 | 26995 | 2899 | 14 | 0 | 1129 | 0 | 0 | logfile |