Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6RBE	4794	2022-05-15	2019-04-10	3.8	4.03	3.73	40.0	0.007	1.27	0.0	0.06	18.44	0.01	2.076	9.23	1.35	11.9	86.8	1.2	-4.17	0.25	0.02	0.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72721	4512	33	1750	0	0	0	logfile
✔	5MSH	3565	2022-05-12	2017-01-04	4.25	3.96	—	20.0	0.014	1.56	0.0	0.07	9.56	0.01	2.323	3.19	0.00	6.1	92.5	1.5	-0.93	0.01	0.02	—	3.7	0.009	1.40	0.0	0.05	13.33	0.01	2.113	15.84	0.00	6.4	93.4	0.2	-0.82	2.65	0.04	0.13	—	4287	551	2	0	0	0	0	logfile
✔	5VZL	8749	2022-05-13	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	14.28	0.01	2.216	7.76	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	17.0	0.010	1.23	1.0	0.05	16.68	0.01	1.239	23.62	0.25	9.1	90.9	0.0	-2.51	2.13	0.41	0.22	0.62	13915	1451	3	115	1	0	0	logfile
✔	6REU	4857	2022-05-16	2019-04-12	4.2	4.32	4.74	30.0	0.006	0.99	0.0	0.06	15.07	0.01	1.681	9.47	0.42	5.7	94.1	0.1	-4.88	0.21	0.03	—	30.0	0.009	1.01	1.0	0.05	14.11	0.01	1.882	22.18	0.03	7.6	92.3	0.1	-2.44	1.06	0.27	0.19	—	33899	4503	25	0	10	0	0	logfile
✔	6Z5U	11082	2022-05-14	2020-05-27	3.9	4.52	—	38.0	0.021	1.88	10.0	0.11	11.93	0.01	0.901	4.94	1.69	2.0	97.7	0.3	-0.47	0.18	0.03	-0.06	4.1	0.008	0.89	1.0	0.04	14.43	0.01	2.092	11.99	0.15	4.7	95.2	0.0	-0.06	1.51	0.27	0.13	0.35	17880	2334	14	0	4	0	0	logfile
✔	6EU3	3958	2022-05-17	2017-10-27	3.3	3.38	—	6.0	0.004	1.06	0.0	0.06	11.41	0.01	1.167	5.10	0.26	12.9	86.6	0.5	-5.18	0.23	0.03	0.17	3.3	0.014	1.36	4.0	0.05	15.60	0.01	1.547	24.09	0.12	14.8	84.8	0.4	-3.48	1.55	0.57	0.53	0.71	38330	4825	22	0	7	0	0	logfile
✔	3JCD	6549	2022-05-20	2015-12-01	3.7	5.07	—	19.0	0.006	0.83	0.0	0.04	14.69	0.00	1.289	14.69	0.02	9.6	85.8	4.5	-2.43	0.34	0.04	0.30	3.4	0.007	1.25	0.0	0.06	19.90	0.01	1.449	58.45	0.37	16.4	82.3	1.3	-4.16	2.42	0.69	0.40	0.16	147815	5982	57	4715	0	0	0	logfile
✔	5M6S	3451	2022-05-12	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	24.50	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.3	0.003	0.66	0.0	0.03	19.58	0.00	1.949	10.68	0.00	6.2	93.8	0.0	2.28	2.49	0.03	0.06	—	1593	98	1	0	0	0	793	logfile
✔	6EU2	3957	2022-05-17	2017-10-27	3.4	3.45	—	6.0	0.004	1.04	0.0	0.06	11.35	0.01	1.787	5.07	0.40	13.0	86.5	0.5	-5.22	0.27	0.04	0.18	3.4	0.011	1.17	3.0	0.05	15.41	0.01	1.507	19.10	0.26	11.6	88.1	0.3	-2.77	1.48	0.55	0.48	0.07	38329	4825	22	0	7	0	0	logfile
✔	3JCE	6550	2022-05-24	2015-12-01	3.2	4.36	—	14.0	0.008	0.88	0.0	0.04	14.83	0.00	1.106	32.70	0.47	10.4	84.8	4.8	-2.93	0.33	0.04	0.16	3.2	0.007	1.06	3.0	0.05	17.20	0.01	1.577	41.40	0.19	11.5	87.2	1.3	-3.17	1.17	0.63	0.30	0.33	154017	6546	59	4798	2	0	0	logfile
✔	7PC2	13316	2022-05-15	2021-08-03	2.8	3.39	—	6.5	0.033	1.53	5.0	0.05	15.16	0.01	1.809	9.01	1.49	7.8	92.2	0.0	-3.81	0.43	0.05	-0.14	2.9	0.014	1.28	3.0	0.05	16.66	0.01	1.526	28.54	2.98	8.1	91.9	0.0	-1.71	1.41	0.57	0.35	0.46	27063	3093	68	0	210	0	0	logfile
✔	6H5i	0140	2022-05-12	2018-07-24	3.9	3.87	—	23.0	0.006	0.81	0.0	0.05	10.47	0.01	2.196	2.64	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.8	0.005	0.83	0.0	0.04	15.12	0.01	1.992	18.45	0.63	4.7	95.3	0.0	0.75	1.92	0.38	0.26	0.19	43900	5392	26	0	0	0	0	logfile
✔	6KFK	9974	2022-05-13	2019-07-08	4.1	4.28	—	15.0	0.015	1.99	0.0	0.08	10.94	0.01	1.444	20.30	0.00	8.2	89.5	2.2	-1.03	0.14	0.06	—	4.2	0.004	0.96	0.0	0.05	12.82	0.00	2.072	21.35	0.00	8.3	90.8	0.9	-1.45	2.85	0.24	0.31	—	65076	8844	22	0	0	0	0	logfile
✔	6TQM	10555	2022-05-17	2019-12-16	3.8	4.34	3.78	20.0	0.014	0.98	0.0	0.12	15.01	0.01	2.083	4.06	1.40	14.5	85.5	0.0	-5.95	0.30	0.07	0.30	3.8	0.011	1.11	1.0	0.04	15.94	0.00	1.851	15.53	0.43	10.5	89.5	0.0	-3.67	1.07	0.36	0.21	0.31	39616	2578	6	0	4	0	19804	logfile
✔	6LTJ	0974	2022-05-16	2020-01-22	3.7	4.16	—	15.0	0.010	1.08	12.0	0.07	22.08	0.01	2.173	14.06	2.63	6.4	93.3	0.3	-3.67	0.46	0.08	0.04	9.6	0.010	1.10	2.0	0.05	22.65	0.01	1.911	26.45	0.09	5.2	94.8	0.0	-1.05	1.51	0.59	0.27	0.44	34283	3656	21	238	1	0	0	logfile
✘	6RBE	4795	2022-05-15	2019-04-10	3.8	3.81	4.03	5.1	0.007	1.27	0.0	0.06	18.44	0.01	2.076	9.23	1.35	11.9	86.8	1.2	-4.17	0.38	0.09	0.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72721	4512	33	1750	0	0	0	logfile
✔	7EGC	31112	2022-05-13	2021-03-24	3.9	3.72	—	4.9	0.008	1.13	76.0	0.08	15.44	0.01	1.402	24.43	3.39	7.3	91.9	0.8	-3.59	0.43	0.10	0.10	3.1	0.006	0.91	1.0	0.05	16.75	0.01	1.954	17.50	0.48	6.4	93.4	0.2	-0.89	1.24	0.51	0.32	0.53	113129	13879	63	142	18	0	0	logfile
✔	5L3P	4001	2022-05-21	2016-05-24	3.7	4.66	—	16.0	0.006	0.60	0.0	0.19	12.42	0.02	2.115	7.26	0.00	8.2	89.4	2.4	-1.95	0.44	0.11	0.16	3.9	0.009	1.22	4.0	0.05	18.03	0.01	1.651	53.10	0.21	10.9	88.4	0.7	-2.75	2.46	0.66	0.41	0.07	149606	6419	58	4704	76	0	0	logfile
✔	6C9Y	7438	2022-05-16	2018-01-29	4.25	4.33	—	9.7	0.008	1.53	5.0	0.08	13.66	0.01	2.064	6.66	5.32	7.8	90.7	1.5	-4.02	0.50	0.12	—	4.1	0.004	0.83	0.0	0.05	13.52	0.01	2.106	21.09	0.03	7.0	92.9	0.1	-1.54	2.44	0.61	0.39	—	28920	3685	7	0	3	0	0	logfile
✔	5o9G	3765	2022-05-14	2017-06-19	4.8	5.07	4.71	10.4	0.003	0.48	0.0	0.03	22.47	0.00	2.194	7.47	0.36	9.1	90.8	0.1	-4.25	0.51	0.13	—	4.8	0.003	0.71	0.0	0.04	23.98	0.00	1.014	17.73	0.00	5.5	94.4	0.1	-1.08	2.79	0.83	0.69	—	19681	1610	11	324	2	0	0	logfile

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