Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6Z5U	11082	2023-11-17	2020-05-27	3.9	4.52	—	38.0	0.021	1.88	10.0	0.11	11.91	0.01	0.901	4.89	1.69	2.0	97.7	0.3	-0.47	0.18	0.03	-0.06	4.1	0.003	0.71	0.0	0.04	14.35	0.00	2.124	12.51	0.36	5.1	94.9	0.0	-0.25	1.55	0.28	0.16	0.60	17880	2334	14	0	4	0	0	logfile
✔	7RTM	24683	2023-11-14	2021-08-13	3.4	3.54	3.61	20.0	0.031	3.05	44.0	0.18	14.10	0.03	1.051	1.40	2.80	6.8	93.0	0.3	-1.12	0.10	0.04	0.21	3.4	0.003	0.82	0.0	0.04	15.77	0.00	2.133	12.74	0.20	5.5	94.4	0.1	0.19	4.57	0.66	0.78	1.49	9161	1142	6	0	12	0	0	logfile
✔	5M6S	3451	2023-11-13	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.6	0.003	0.63	0.0	0.03	18.81	0.00	1.995	10.68	0.00	6.2	93.8	0.0	2.64	2.46	0.03	0.08	—	1593	98	1	0	0	0	793	logfile
✘	8EAo	27792	2023-11-18	2022-08-29	3.2	4.04	3.15	20.0	0.003	0.60	0.0	0.05	14.09	0.00	2.197	10.56	0.10	3.6	96.4	0.0	1.03	0.18	0.04	-0.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	71628	8964	24	0	0	0	0	logfile
✔	7PC2	13316	2023-11-19	2021-08-03	2.8	3.39	—	6.5	0.033	1.66	5.0	0.06	15.68	0.01	1.809	9.01	1.49	7.8	92.2	0.0	-3.81	0.43	0.05	-0.14	3.1	0.005	1.10	2.0	0.06	17.89	0.01	1.959	19.86	4.47	7.3	92.7	0.0	-2.01	1.76	0.68	0.63	1.39	27063	3093	68	0	210	0	0	logfile
✔	7V66	31736	2023-11-21	2021-08-19	1.89	1.85	—	5.2	0.006	1.02	0.0	0.07	12.14	0.01	1.929	1.89	2.07	1.9	98.0	0.0	1.97	0.09	0.05	1.38	5.1	0.004	0.76	0.0	0.04	15.44	0.00	2.197	20.43	1.35	4.9	95.1	0.0	2.55	1.19	0.16	0.14	-0.14	33216	4128	24	0	0	0	0	logfile
✔	6KFK	9974	2023-11-15	2019-07-08	4.1	4.28	—	15.0	0.015	1.99	0.0	0.08	10.94	0.01	1.444	20.13	0.00	8.2	89.5	2.2	-1.03	0.14	0.06	—	4.2	0.003	0.84	0.0	0.05	12.77	0.00	2.091	18.31	0.01	7.4	91.8	0.9	-0.89	2.83	0.23	0.28	—	65076	8844	22	0	0	0	0	logfile
✔	6H5i	0140	2023-11-13	2018-07-24	3.9	3.87	—	23.0	0.006	0.81	0.0	0.05	10.47	0.01	2.196	2.64	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.7	0.003	0.67	0.0	0.04	15.36	0.00	2.097	14.22	0.32	4.1	95.9	0.0	1.46	1.26	0.37	0.24	0.27	43900	5392	26	0	0	0	0	logfile
✔	8DFo	27409	2023-11-18	2022-06-22	3.1	3.40	3.29	7.2	0.022	1.64	93.0	0.16	17.81	0.01	1.724	6.88	0.57	4.8	95.2	0.0	-0.44	0.27	0.07	0.22	3.4	0.003	0.75	0.0	0.04	17.28	0.01	2.086	17.82	0.12	4.2	95.8	0.0	-0.71	1.86	0.44	0.39	0.56	23861	2912	13	45	0	0	0	logfile
✔	8HiA	34813	2023-11-14	2022-11-19	4.9	4.49	2.13	9.6	0.001	0.36	0.0	0.05	15.83	0.00	2.251	1.11	2.86	12.1	87.6	0.2	-4.39	0.47	0.07	—	9.3	0.006	0.81	0.0	0.05	13.96	0.00	2.003	41.39	4.76	14.3	85.7	0.0	-7.09	12.61	0.65	0.22	—	7200	460	20	0	0	0	3660	logfile
✔	6LTJ	0974	2023-11-21	2020-01-22	3.7	4.16	—	15.0	0.010	1.08	12.0	0.07	22.08	0.01	2.173	14.05	2.63	6.4	93.3	0.3	-3.67	0.46	0.08	0.04	3.6	0.005	0.89	0.0	0.05	22.38	0.01	1.977	27.31	0.56	5.6	94.4	0.0	-0.80	1.62	0.60	0.30	0.49	34283	3656	21	238	1	0	0	logfile
✘	6RBE	4795	2023-11-18	2019-04-10	3.8	3.81	4.03	5.1	0.007	1.27	0.0	0.06	18.44	0.01	2.076	9.10	1.35	11.9	86.8	1.2	-4.17	0.38	0.09	0.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72721	4512	33	1750	0	0	0	logfile
✔	8GWE	34310	2023-11-18	2022-09-16	2.66	3.19	2.77	16.0	0.009	0.97	5.0	0.06	17.61	0.01	1.065	13.66	5.00	8.4	91.2	0.3	-1.93	0.39	0.09	0.45	9.7	0.003	0.82	0.0	0.04	17.99	0.00	1.934	19.68	4.48	9.5	90.4	0.2	-2.52	1.56	0.46	0.26	0.17	22040	2668	15	56	10	1	0	logfile
✔	7EGC	31112	2023-11-14	2021-03-24	3.9	3.72	—	4.9	0.008	1.13	76.0	0.08	15.43	0.01	1.402	24.31	3.39	7.3	91.9	0.8	-3.59	0.43	0.10	0.10	3.1	0.008	0.96	3.0	0.05	16.79	0.01	1.880	20.83	0.49	7.3	92.4	0.3	-0.99	1.29	0.53	0.34	0.60	113129	13879	63	142	18	0	0	logfile
✔	7W6P	32331	2023-11-14	2021-12-02	3.47	3.79	—	9.6	0.004	0.70	0.0	0.04	13.78	0.00	2.196	14.60	0.11	7.0	93.0	0.0	-0.94	0.22	0.11	0.18	8.7	0.003	0.68	0.0	0.04	15.37	0.00	2.199	14.66	0.44	5.7	94.3	0.0	-0.83	1.94	0.31	0.25	0.54	8408	1083	5	0	1	0	0	logfile
✔	7YKS	33896	2023-11-17	2022-07-23	3.0	3.20	3.06	4.7	0.008	1.00	0.0	0.06	10.27	0.01	2.291	4.01	0.00	6.7	93.1	0.2	-6.58	0.17	0.11	-0.18	3.2	0.003	0.77	0.0	0.04	16.58	0.00	2.059	8.61	1.28	4.7	95.3	0.0	-0.45	2.19	0.59	0.80	1.54	18984	2364	4	0	0	0	0	logfile
✔	6C9Y	7438	2023-11-20	2018-01-29	4.25	4.33	—	9.7	0.008	1.53	5.0	0.08	13.66	0.01	2.064	6.62	5.32	7.8	90.7	1.5	-4.02	0.50	0.12	—	4.1	0.004	0.84	0.0	0.05	13.56	0.01	2.096	20.48	0.06	6.8	93.1	0.1	-1.47	2.40	0.61	0.38	—	28920	3685	7	0	3	0	0	logfile
✔	5o9G	3765	2023-11-17	2017-06-19	4.8	5.07	4.71	10.4	0.003	0.48	0.0	0.03	22.47	0.00	2.194	7.39	0.36	9.1	90.8	0.1	-4.25	0.51	0.13	—	4.8	0.003	0.72	0.0	0.04	24.03	0.00	1.234	17.40	0.00	4.8	95.2	0.1	-0.96	2.78	0.83	0.69	—	19681	1610	11	324	2	0	0	logfile
✔	5M5H	4155	2023-11-13	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.89	0.0	0.05	12.67	0.01	2.275	23.84	0.00	8.7	91.3	0.0	-1.45	2.20	0.15	0.14	—	1086	132	1	0	0	0	0	logfile
✔	6CAJ	7442	2023-11-18	2018-01-31	2.8	2.84	—	4.2	0.008	0.88	0.0	0.17	9.84	0.01	1.467	5.88	0.24	4.5	95.5	0.0	-3.63	0.33	0.15	2.28	2.9	0.004	0.69	0.0	0.04	16.38	0.00	2.142	11.46	2.76	5.1	94.9	0.0	-0.19	1.21	0.75	0.85	2.84	24295	3210	11	0	1	0	0	logfile

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