Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8oRE	17121	2023-08-09	2023-04-13	2.5	2.67	2.44	2.7	0.011	2.09	7.0	0.14	10.93	0.01	2.570	0.00	0.00	8.0	92.0	0.0	-2.10	0.32	0.74	5.29	2.7	0.003	0.69	0.0	0.05	17.33	0.00	2.218	3.60	1.00	6.7	93.3	0.0	-1.84	3.46	0.37	0.81	5.04	3615	231	3	0	0	0	1845	logfile
✔	7JSH	22454	2023-08-10	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.005	1.30	0.0	0.05	13.69	0.01	1.942	27.17	0.00	31.8	67.9	0.3	-5.48	6.11	0.73	0.61	—	7916	1904	8	15	0	0	0	logfile
✔	7NCH	12266	2023-08-12	2021-01-28	3.84	3.76	3.69	3.8	0.013	1.61	2.0	0.10	14.68	0.00	2.485	0.00	0.19	9.4	90.6	0.0	-3.70	0.60	0.45	2.36	3.8	0.003	0.70	2.0	0.05	15.63	0.00	1.978	9.23	0.00	11.2	88.8	0.0	-4.13	1.66	0.64	0.52	2.25	11292	816	12	0	0	0	5796	logfile
✔	7QL2	14061	2023-08-09	2021-12-19	2.95	2.96	2.65	3.1	0.010	2.11	2.0	0.11	10.98	0.01	2.674	0.00	0.00	7.6	92.4	0.0	-2.82	0.30	0.74	4.50	3.5	0.003	0.58	0.0	0.05	12.52	0.00	2.497	2.63	1.48	8.3	91.7	0.0	-3.27	1.13	0.22	0.72	4.36	2286	150	3	0	0	0	1179	logfile
✔	7QVC	14174	2023-08-09	2022-01-21	2.64	2.62	2.62	2.6	0.012	2.09	10.0	0.12	15.49	0.01	2.525	0.00	0.53	5.8	94.2	0.0	-2.45	0.43	0.86	7.41	2.6	0.006	0.78	0.0	0.06	18.05	0.00	2.117	9.84	3.70	6.0	94.0	0.0	-2.38	2.44	0.42	0.90	5.84	3255	405	3	0	0	0	0	logfile
✔	7QL0	14059	2023-08-09	2021-12-19	3.13	2.96	2.97	3.1	0.011	1.87	0.0	0.09	12.06	0.01	2.510	0.00	0.00	4.0	96.0	0.0	-2.04	0.39	0.77	6.02	3.2	0.003	0.59	0.0	0.05	14.36	0.00	2.094	6.58	0.00	1.0	99.0	0.0	-1.73	1.65	0.41	0.84	6.04	6390	414	6	0	0	0	3258	logfile
✔	7ADM	11731	2023-08-11	2020-09-15	3.5	3.77	3.57	3.8	0.013	1.98	3.0	0.11	15.37	0.02	2.582	0.00	0.73	11.9	88.1	0.0	-2.91	0.49	0.70	2.46	3.8	0.004	0.66	0.0	0.04	16.44	0.00	2.068	10.08	0.18	11.4	88.6	0.0	-1.79	0.91	0.49	0.71	2.27	9726	614	1	0	0	0	4799	logfile
✔	7JSE	22451	2023-08-13	2020-08-14	4.6	5.13	—	4.2	0.001	0.38	0.0	0.02	10.51	0.00	2.425	0.00	0.00	11.4	88.0	0.6	-2.68	0.79	0.50	—	3.9	0.007	1.10	0.0	0.09	14.86	0.00	2.156	11.87	0.00	20.1	79.9	0.0	-3.21	2.77	0.87	0.64	—	13288	3168	24	32	0	0	0	logfile
✔	7R4T	14316	2023-08-10	2022-02-09	2.75	2.72	2.62	2.8	0.011	1.77	0.0	0.09	11.86	0.01	2.520	0.00	0.00	3.8	96.2	0.0	-2.02	0.42	0.84	4.94	2.8	0.004	0.55	0.0	0.05	15.87	0.00	2.374	2.12	0.76	2.7	97.3	0.0	-1.45	2.29	0.42	0.89	6.04	7074	456	6	0	0	0	3606	logfile
✔	6CoZ	7545	2023-08-09	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.85	0.0	0.04	5.41	0.00	2.334	6.19	0.00	9.6	90.4	0.0	-1.73	1.59	0.82	0.77	—	1586	320	2	0	0	0	0	logfile
✔	7QKW	14055	2023-08-09	2021-12-19	2.32	1.74	2.60	2.3	0.010	1.93	1.0	0.10	13.53	0.01	2.534	0.00	0.00	5.4	94.6	0.0	-2.79	0.41	0.81	7.02	2.3	0.002	0.50	0.0	0.05	16.64	0.00	2.420	1.91	2.54	4.4	95.6	0.0	-2.76	1.36	0.41	0.84	5.96	4707	306	6	0	0	0	2439	logfile
✔	7JG6	22312	2023-08-15	2020-07-18	3.7	2.39	3.79	2.2	0.008	1.40	0.0	0.00	6.55	0.01	2.433	0.00	0.00	2.9	97.0	0.1	-0.59	0.62	0.54	—	2.3	0.004	0.90	0.0	0.00	5.83	0.00	2.226	1.17	0.00	11.4	88.6	0.0	-0.80	1.65	0.71	0.69	—	19320	4819	20	0	11	0	0	logfile
✔	3JBS	6478	2023-08-09	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.003	0.61	0.0	0.04	18.11	0.00	2.225	5.17	3.95	1.7	98.3	0.0	0.99	1.75	0.21	0.81	3.63	1401	175	1	0	0	0	0	logfile
✔	7QKi	14043	2023-08-10	2021-12-17	3.13	3.29	3.04	3.2	0.011	1.99	3.0	0.10	9.18	0.01	2.508	0.00	0.00	10.1	89.9	0.0	-1.50	0.41	0.79	6.28	3.3	0.004	0.63	0.0	0.05	11.95	0.00	2.085	5.52	0.00	5.0	95.0	0.0	-1.84	0.77	0.39	0.81	5.60	7074	456	6	0	0	0	3606	logfile
✔	7QVF	14176	2023-08-10	2022-01-21	3.64	3.54	3.42	4.1	0.012	2.10	22.0	0.12	15.51	0.01	2.525	0.00	0.53	6.0	94.0	0.0	-2.41	0.43	0.77	3.90	3.6	0.005	0.87	0.0	0.06	16.80	0.00	2.168	16.59	1.19	6.6	93.4	0.0	-2.44	3.86	0.40	0.75	3.27	6516	810	6	0	0	0	0	logfile
✔	8ED3	28027	2023-08-22	2022-09-02	3.5	3.26	3.44	3.5	0.013	1.18	0.0	0.08	10.35	0.01	2.429	0.01	0.00	2.5	97.5	0.0	-0.72	0.79	0.77	1.60	3.5	0.005	0.62	0.0	0.05	14.87	0.01	2.063	8.07	0.30	2.5	97.5	0.0	0.79	0.88	0.79	0.81	1.42	91140	12060	60	0	0	0	0	logfile
✔	7SCZ	25043	2023-08-17	2021-09-29	3.5	4.01	3.49	3.8	0.014	1.91	1.0	0.09	27.47	0.03	2.529	0.04	0.00	1.7	98.3	0.0	0.09	0.80	0.77	2.51	3.8	0.005	0.64	0.0	0.04	27.89	0.00	1.967	6.90	0.00	2.2	97.8	0.0	2.69	1.42	0.79	0.80	1.57	23205	850	11	294	0	0	10435	logfile
✔	7LWL	23549	2023-08-17	2021-03-01	2.84	3.04	—	3.0	0.013	1.79	2.0	0.10	13.07	0.01	2.505	0.04	0.53	4.2	95.6	0.2	-0.78	0.72	0.83	4.07	3.0	0.003	0.61	0.0	0.05	15.23	0.00	2.144	5.60	1.33	2.7	97.2	0.0	0.37	0.63	0.72	0.84	3.28	23847	3003	6	0	30	0	0	logfile
✔	7LYM	23595	2023-08-18	2021-03-07	3.57	3.82	—	3.7	0.013	1.73	2.0	0.10	13.11	0.01	2.536	0.04	0.84	5.3	94.4	0.4	-1.08	0.80	0.83	2.78	3.7	0.002	0.60	0.0	0.04	14.54	0.00	2.117	6.01	0.15	3.5	96.5	0.0	0.49	0.66	0.80	0.83	2.15	23916	3006	6	0	33	0	0	logfile
✔	7TPF	26053	2023-08-17	2022-01-25	3.4	3.74	—	3.4	0.013	1.76	3.0	0.09	12.86	0.01	2.518	0.04	0.72	6.1	93.5	0.3	-0.86	0.84	0.86	3.82	3.4	0.003	0.61	0.0	0.04	13.55	0.00	2.187	4.30	0.17	4.2	95.7	0.1	0.28	0.45	0.85	0.87	3.14	23199	2983	18	0	58	0	0	logfile

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