Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WX6	21951	2023-02-26	2020-05-09	2.0	2.11	2.08	2.1	0.006	0.69	0.0	0.04	14.94	0.00	2.277	0.00	0.00	1.2	98.8	0.0	1.60	0.77	0.88	7.70	2.1	0.003	0.52	0.0	0.03	16.21	0.00	2.020	2.93	0.69	1.2	98.8	0.0	4.75	0.53	0.79	0.90	7.39	68332	4128	56	0	8	2420	32664	logfile
✔	7QVC	14174	2023-02-17	2022-01-21	2.64	2.62	2.62	2.6	0.012	2.09	10.0	0.12	15.49	0.01	2.525	0.00	0.53	5.8	94.2	0.0	-2.45	0.43	0.86	7.41	2.6	0.006	0.78	0.0	0.06	18.05	0.00	2.117	9.84	3.70	6.0	94.0	0.0	-2.38	2.44	0.42	0.90	5.84	3255	405	3	0	0	0	0	logfile
✔	7QK1	14028	2023-02-17	2021-12-17	3.03	3.20	2.13	3.2	0.011	1.97	2.0	0.11	12.98	0.01	2.502	0.00	0.00	5.5	94.5	0.0	-1.61	0.48	0.84	4.10	3.2	0.004	0.75	0.0	0.05	16.44	0.00	2.210	6.55	0.51	3.7	96.3	0.0	-1.82	3.39	0.41	0.84	4.27	3444	450	6	0	0	0	0	logfile
✔	7JSH	22454	2023-02-18	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.005	1.30	0.0	0.05	13.69	0.01	1.942	27.17	0.00	31.8	67.9	0.3	-5.48	6.11	0.73	0.61	—	7916	1904	8	15	0	0	0	logfile
✔	7JSE	22451	2023-02-20	2020-08-14	4.6	5.13	—	4.2	0.001	0.38	0.0	0.02	10.51	0.00	2.425	0.00	0.00	11.4	88.0	0.6	-2.68	0.79	0.50	—	3.8	0.006	1.04	0.0	0.08	14.36	0.00	2.181	8.70	0.00	15.8	84.2	0.0	-2.47	2.74	0.84	0.74	—	13288	3168	24	32	0	0	0	logfile
✔	7NCH	12266	2023-02-20	2021-01-28	3.84	3.76	3.69	3.8	0.013	1.61	2.0	0.10	14.68	0.00	2.485	0.00	0.19	9.4	90.6	0.0	-3.70	0.60	0.45	2.36	3.8	0.003	0.70	2.0	0.05	15.63	0.00	1.978	9.23	0.00	11.2	88.8	0.0	-4.13	1.66	0.64	0.52	2.25	11292	816	12	0	0	0	5796	logfile
✔	6CoZ	7545	2023-02-16	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.85	0.0	0.04	5.41	0.00	2.334	6.19	0.00	9.6	90.4	0.0	-1.73	1.59	0.82	0.77	—	1586	320	2	0	0	0	0	logfile
✔	7QK3	14030	2023-02-16	2021-12-17	2.44	2.73	2.35	2.7	0.010	2.07	0.0	0.11	12.55	0.01	2.519	0.00	0.00	3.4	96.6	0.0	-3.04	0.38	0.77	5.65	2.7	0.003	0.72	0.0	0.05	16.27	0.00	2.309	2.92	0.64	2.8	97.2	0.0	-2.78	2.36	0.39	0.82	5.18	2742	183	3	0	0	0	1407	logfile
✔	7QL3	14062	2023-02-17	2021-12-19	3.32	3.47	3.01	3.5	0.011	2.01	8.0	0.11	12.27	0.01	2.489	0.00	0.00	7.7	92.3	0.0	-3.47	0.46	0.82	4.29	3.5	0.004	0.76	0.0	0.05	13.63	0.01	2.128	5.14	0.27	4.1	95.9	0.0	-2.49	1.15	0.43	0.83	4.92	3246	426	6	0	0	0	0	logfile
✔	7QKG	14041	2023-02-16	2021-12-17	3.36	3.19	3.09	3.4	0.010	2.03	0.0	0.10	10.76	0.01	2.528	0.00	0.00	6.4	93.6	0.0	-1.98	0.38	0.80	4.23	3.5	0.003	0.59	0.0	0.05	13.27	0.00	2.236	5.27	0.00	4.5	95.5	0.0	-1.51	1.16	0.36	0.83	4.87	2469	162	3	0	0	0	1278	logfile
✔	7N9Q	24259	2023-02-18	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.5	0.003	1.00	0.0	0.00	5.05	0.00	2.580	6.76	0.00	12.3	86.7	0.9	-4.51	2.40	0.85	0.81	—	6945	2315	1	0	0	0	0	logfile
✔	7QJW	14024	2023-02-18	2021-12-17	2.81	2.81	1.88	2.9	0.012	2.09	0.0	0.10	11.96	0.01	2.556	0.00	0.00	2.3	96.3	1.4	-1.19	0.34	0.72	5.41	2.8	0.003	0.63	0.0	0.05	15.65	0.00	2.366	4.13	1.01	2.7	97.3	0.0	-1.58	1.60	0.38	0.78	4.37	7032	450	6	0	0	0	3588	logfile
✔	7QL2	14061	2023-02-16	2021-12-19	2.95	2.96	2.65	3.1	0.010	2.11	2.0	0.11	10.98	0.01	2.674	0.00	0.00	7.6	92.4	0.0	-2.82	0.30	0.74	4.50	3.5	0.003	0.58	0.0	0.05	12.52	0.00	2.497	2.63	1.48	8.3	91.7	0.0	-3.27	1.13	0.22	0.72	4.36	2286	150	3	0	0	0	1179	logfile
✔	7QVF	14176	2023-02-17	2022-01-21	3.64	3.54	3.42	4.1	0.012	2.10	22.0	0.12	15.51	0.01	2.525	0.00	0.53	6.0	94.0	0.0	-2.41	0.43	0.77	3.90	3.6	0.005	0.87	0.0	0.06	16.80	0.00	2.168	16.59	1.19	6.6	93.4	0.0	-2.44	3.86	0.40	0.75	3.27	6516	810	6	0	0	0	0	logfile
✔	7TP9	26049	2023-02-24	2022-01-25	3.48	3.86	—	3.5	0.013	1.76	6.0	0.09	12.66	0.01	2.518	0.02	0.94	6.9	92.4	0.7	-0.96	0.84	0.84	3.41	3.5	0.003	0.59	0.0	0.04	13.52	0.00	2.052	4.76	0.09	4.8	95.1	0.1	0.20	0.49	0.85	0.86	2.76	23199	2983	18	0	58	0	0	logfile
✔	7LWL	23549	2023-02-24	2021-03-01	2.84	3.04	—	3.0	0.013	1.79	2.0	0.09	12.97	0.01	2.505	0.04	0.53	4.2	95.6	0.2	-0.78	0.72	0.83	4.07	3.0	0.004	0.62	0.0	0.05	15.10	0.00	2.146	5.65	1.64	3.1	96.9	0.0	0.40	0.64	0.73	0.85	3.38	23847	3003	6	0	30	0	0	logfile
✔	7TPF	26053	2023-02-24	2022-01-25	3.4	3.74	—	3.4	0.013	1.75	3.0	0.09	12.67	0.01	2.518	0.04	0.72	6.1	93.5	0.3	-0.86	0.84	0.86	3.82	3.4	0.004	0.60	0.0	0.04	13.28	0.00	2.189	4.23	0.09	4.3	95.5	0.1	0.39	0.45	0.85	0.87	3.13	23199	2983	18	0	58	0	0	logfile
✔	7LYM	23595	2023-02-24	2021-03-07	3.57	3.82	—	3.7	0.013	1.73	2.0	0.09	13.00	0.01	2.536	0.04	0.84	5.3	94.4	0.4	-1.08	0.80	0.83	2.78	3.7	0.003	0.60	0.0	0.04	14.42	0.00	2.130	5.73	0.15	3.5	96.5	0.0	0.43	0.66	0.80	0.83	2.20	23916	3006	6	0	33	0	0	logfile
✔	7SCZ	25043	2023-02-24	2021-09-29	3.5	4.01	3.49	3.8	0.014	1.91	1.0	0.09	27.47	0.03	2.529	0.04	0.00	1.7	98.3	0.0	0.09	0.80	0.77	2.51	3.8	0.005	0.64	0.0	0.04	27.89	0.00	1.967	6.90	0.00	2.2	97.8	0.0	2.69	1.42	0.79	0.80	1.57	23205	850	11	294	0	0	10435	logfile
✔	7LWQ	23554	2023-02-23	2021-03-01	3.44	3.73	—	3.6	0.013	1.77	3.0	0.10	13.71	0.01	2.519	0.05	1.18	6.6	93.1	0.4	-1.34	0.77	0.79	2.74	3.6	0.003	0.61	0.0	0.04	14.89	0.00	2.149	7.03	0.19	4.3	95.7	0.0	0.08	1.26	0.78	0.81	2.05	19273	2425	7	0	29	0	0	logfile

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