Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7D1U	30548	2021-06-05	2020-09-15	2.08	1.94	2.04	2.0	0.017	1.69	27.0	0.09	18.17	0.02	1.202	3.96	3.09	2.3	97.5	0.2	-1.36	0.74	0.87	6.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52655	5312	106	0	196	2121	0	logfile
✔	6A6B	6988	2021-06-01	2018-06-27	3.07	3.41	2.07	3.4	0.006	1.07	0.0	0.07	7.61	0.00	2.263	7.15	0.00	11.3	88.7	0.0	-3.85	0.53	0.71	3.91	3.4	0.006	0.76	0.0	0.05	13.78	0.00	2.189	15.42	0.93	9.8	90.2	0.0	-2.94	2.11	0.53	0.72	3.31	5256	756	12	0	0	0	0	logfile
✔	7JJP	22358	2021-06-05	2020-07-27	1.94	2.15	2.08	2.1	0.011	1.21	0.0	0.07	14.56	0.01	2.228	2.51	0.56	1.6	98.4	0.0	0.39	0.71	0.85	5.30	2.1	0.002	0.54	0.0	0.04	14.98	0.00	2.108	7.63	0.61	0.9	99.1	0.0	3.79	0.93	0.72	0.87	4.90	40920	2352	36	0	180	396	19104	logfile
✔	6WX6	21951	2021-06-01	2020-05-09	2.0	2.10	2.08	2.1	0.006	0.69	0.0	0.04	14.94	0.00	2.277	0.00	0.00	1.2	98.8	0.0	1.60	0.77	0.88	7.70	2.1	0.004	0.54	0.0	0.04	16.22	0.00	2.001	2.31	0.69	1.2	98.8	0.0	4.73	0.53	0.78	0.89	7.36	68332	4128	56	0	8	2420	32664	logfile
✘	6ZJA	11233	2021-06-02	2020-06-28	2.0	2.10	2.09	2.1	0.005	0.86	0.0	0.06	14.30	0.01	1.974	0.60	1.37	4.1	95.9	0.0	-0.40	0.79	0.87	6.97	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	77951	9684	60	0	36	3191	0	logfile
✔	6SK0	10219	2021-06-01	2019-08-14	2.3	2.29	2.11	2.2	0.008	0.74	0.0	0.05	15.85	0.00	2.202	9.23	0.97	3.3	96.7	0.0	-1.30	0.70	0.83	6.89	2.2	0.006	0.74	0.0	0.05	17.20	0.00	2.132	11.20	0.81	4.5	95.5	0.0	-1.33	1.50	0.79	0.89	7.00	5826	792	3	0	0	0	0	logfile
✔	6X19	21993	2021-06-02	2020-05-18	2.1	2.20	2.11	2.1	0.009	1.48	6.0	0.08	14.12	0.01	2.134	12.47	1.01	2.7	97.3	0.1	-1.61	0.73	0.84	4.93	2.2	0.003	0.80	0.0	0.04	16.71	0.00	2.132	6.38	1.10	2.0	98.0	0.0	1.16	1.56	0.72	0.87	4.45	10277	1258	9	0	1	136	0	logfile
✘	6XZ7	10655	2021-06-03	2020-02-03	2.1	2.05	2.12	2.1	0.007	0.77	1.0	0.05	14.33	0.01	1.128	6.27	3.26	2.8	96.8	0.4	-2.20	0.41	0.69	5.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	94915	3351	45	3169	179	528	0	logfile
✔	6RJU	4906	2021-06-01	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	3.2	0.003	0.67	0.0	0.03	16.11	0.00	2.231	7.54	0.00	7.8	92.2	0.0	-1.37	1.76	0.29	0.06	-2.78	1992	131	1	0	0	0	997	logfile
✔	6QJQ	4566	2021-06-01	2019-01-24	3.7	3.99	2.14	4.1	0.021	1.17	0.0	0.11	13.36	0.01	2.499	5.58	0.00	4.0	94.0	2.0	-4.41	0.39	0.75	2.60	4.1	0.004	0.77	0.0	0.05	14.30	0.00	2.289	9.17	0.00	10.0	90.0	0.0	-3.19	2.14	0.38	0.77	1.67	1218	162	6	0	0	0	0	logfile
✘	7KJR	22898	2021-06-01	2020-10-26	2.08	2.52	2.15	2.4	0.007	0.89	0.0	0.05	17.13	0.00	2.254	7.60	0.25	1.8	98.2	0.0	1.13	0.68	0.87	5.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3840	448	8	0	2	122	0	logfile
✔	7o6E	12738	2021-06-04	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.49	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.003	0.47	0.0	0.03	18.11	0.01	2.219	3.33	0.52	1.0	99.0	0.0	4.44	0.29	0.87	0.89	5.32	35304	4248	48	0	0	1392	0	logfile
✘	5WP9	8874	2021-06-05	2017-08-03	4.22	4.31	2.20	5.2	0.011	1.22	0.0	0.05	9.98	0.02	1.259	2.07	0.63	5.5	93.1	1.4	-0.58	0.51	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	117048	7352	24	0	16	0	59080	logfile
✔	6WZG	21972	2021-06-01	2020-05-13	2.3	2.06	2.22	2.3	0.012	1.56	18.0	0.12	13.99	0.01	2.270	4.80	1.65	2.0	98.0	0.0	0.81	0.66	0.71	4.83	2.3	0.004	0.65	0.0	0.04	16.32	0.00	2.095	5.43	1.98	2.3	97.7	0.0	1.43	0.99	0.73	0.86	4.94	8939	1165	6	0	0	0	0	logfile
✔	6DRV	8908	2021-06-04	2018-06-13	2.2	2.30	2.26	2.3	0.017	1.45	0.0	0.08	12.56	0.02	2.116	2.95	0.23	6.8	91.1	2.1	-1.87	0.59	0.79	5.89	2.3	0.006	0.81	0.0	0.05	16.49	0.01	2.149	6.53	1.57	3.0	97.0	0.0	0.18	1.48	0.74	0.89	6.03	32888	4096	4	0	0	0	0	logfile
✔	6L3T	0825	2021-06-03	2019-10-15	2.34	2.41	2.27	2.4	0.011	1.07	0.0	0.05	16.88	0.01	2.306	1.05	3.61	1.0	99.0	0.0	-3.24	0.68	0.86	4.85	2.4	0.002	0.59	0.0	0.03	16.28	0.00	1.929	2.64	1.41	0.8	99.2	0.0	2.99	3.48	0.67	0.86	4.09	19722	1206	18	0	6	204	9588	logfile
✔	7LXY	23579	2021-06-04	2021-03-05	2.2	2.32	2.27	2.3	0.011	1.22	0.0	0.07	11.01	0.01	2.182	1.39	0.09	1.8	98.2	0.0	0.45	0.75	0.81	4.97	2.3	0.004	0.65	0.0	0.05	14.34	0.00	2.016	5.31	1.42	1.9	98.1	0.0	0.98	0.52	0.77	0.84	4.55	33987	4446	36	0	69	729	0	logfile
✘	6X8M	22094	2021-06-01	2020-06-01	2.2	2.07	2.27	2.2	0.005	0.63	0.0	0.05	13.91	0.01	2.264	5.26	0.82	3.3	96.7	0.0	-1.41	0.74	0.86	6.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	133440	16800	60	0	0	0	0	logfile
✔	6UUS	20901	2021-06-01	2019-10-31	2.4	2.10	2.30	2.4	0.002	0.50	0.0	0.04	17.13	0.00	2.214	7.39	3.27	2.8	97.2	0.0	-2.25	0.57	0.72	3.22	2.2	0.003	0.57	0.0	0.04	17.58	0.00	2.173	8.97	1.43	2.9	97.1	0.0	0.67	1.03	0.64	0.77	3.21	9308	1190	7	0	0	0	0	logfile
✔	6XYo	10650	2021-06-01	2020-01-30	2.6	2.79	2.31	2.7	0.008	0.74	0.0	0.06	12.93	0.00	2.300	5.78	0.93	2.6	97.4	0.0	-2.90	0.46	0.89	5.98	2.7	0.006	0.61	0.0	0.05	18.06	0.00	2.220	4.36	2.04	4.5	95.5	0.0	-1.84	0.96	0.48	0.91	4.98	5490	800	10	0	0	0	0	logfile

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