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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7Xo0 | 33332 | 2022-12-11 | 2022-04-30 | 3.0 | 2.48 | 1.85 | 3.1 | 0.001 | 0.39 | 0.0 | 0.05 | 16.62 | 0.00 | 2.280 | 4.76 | 0.00 | 5.0 | 95.0 | 0.0 | -2.66 | 0.47 | 0.87 | 7.11 | 3.1 | 0.006 | 0.56 | 0.0 | 0.06 | 17.26 | 0.00 | 2.220 | 6.29 | 2.33 | 10.3 | 89.7 | 0.0 | -3.10 | 0.38 | 0.47 | 0.88 | 7.05 | 2550 | 372 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6S61 | 10101 | 2022-12-14 | 2019-07-02 | 1.84 | 1.89 | 1.85 | 1.9 | 0.011 | 1.36 | 0.0 | 0.06 | 12.21 | 0.01 | 0.312 | 2.62 | 1.29 | 1.8 | 98.2 | 0.0 | 3.69 | 0.77 | 0.86 | 8.46 | 1.9 | 0.003 | 0.57 | 0.0 | 0.03 | 14.82 | 0.00 | 1.798 | 5.19 | 0.65 | 1.8 | 98.2 | 0.0 | 4.54 | 0.74 | 0.80 | 0.90 | 8.65 | 71060 | 4128 | 72 | 0 | 30 | 3854 | 32904 | logfile |
✘ | 7UT7 | 26757 | 2022-12-18 | 2022-04-26 | 1.91 | 1.94 | 1.87 | 2.0 | 0.042 | 0.66 | 0.0 | 0.05 | 16.33 | 0.01 | 1.975 | 5.18 | 0.87 | 2.4 | 97.6 | 0.0 | 0.26 | 0.72 | 0.85 | 7.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16442 | 1998 | 12 | 0 | 8 | 415 | 0 | logfile |
✔ | 7QJW | 14024 | 2022-12-11 | 2021-12-17 | 2.81 | 2.81 | 1.88 | 2.9 | 0.012 | 2.09 | 0.0 | 0.10 | 11.96 | 0.01 | 2.556 | 0.85 | 0.00 | 2.3 | 96.3 | 1.4 | -1.19 | 0.34 | 0.72 | 5.41 | 2.8 | 0.002 | 0.61 | 0.0 | 0.05 | 15.46 | 0.00 | 2.213 | 3.70 | 0.51 | 3.0 | 97.0 | 0.0 | -1.53 | 1.60 | 0.38 | 0.77 | 4.34 | 7032 | 450 | 6 | 0 | 0 | 0 | 3588 | logfile |
✔ | 7P6A | 13223 | 2022-12-11 | 2021-07-15 | 1.9 | 1.91 | 1.88 | 1.9 | 0.004 | 0.72 | 0.0 | 0.06 | 12.30 | 0.01 | 2.247 | 3.33 | 0.00 | 3.8 | 96.2 | 0.0 | -3.07 | 0.51 | 0.86 | 7.13 | 1.9 | 0.003 | 0.65 | 0.0 | 0.05 | 14.09 | 0.00 | 2.291 | 4.28 | 0.00 | 4.7 | 95.3 | 0.0 | -2.61 | 0.82 | 0.55 | 0.89 | 7.80 | 4166 | 540 | 10 | 0 | 0 | 76 | 0 | logfile |
✔ | 7QV5 | 14167 | 2022-12-11 | 2022-01-19 | 3.0 | 3.03 | 1.88 | 3.0 | 0.010 | 0.44 | 0.0 | 0.06 | 9.44 | 0.00 | 2.689 | 1.08 | 0.00 | 6.2 | 93.8 | 0.0 | -2.64 | 0.46 | 0.86 | 7.89 | 3.1 | 0.002 | 0.35 | 0.0 | 0.06 | 12.41 | 0.00 | 2.460 | 1.08 | 0.00 | 2.1 | 97.9 | 0.0 | -1.42 | 0.86 | 0.50 | 0.90 | 6.99 | 5562 | 342 | 27 | 0 | 18 | 0 | 2997 | logfile |
✔ | 7QEQ | 13937 | 2022-12-14 | 2021-12-03 | 1.9 | 2.38 | 1.89 | 2.1 | 0.009 | 0.61 | 0.0 | 0.04 | 12.54 | 0.00 | 2.181 | 2.19 | 1.18 | 1.1 | 98.9 | 0.0 | 1.60 | 0.82 | 0.90 | 4.56 | 2.1 | 0.003 | 0.58 | 0.0 | 0.04 | 14.03 | 0.00 | 2.247 | 3.05 | 1.13 | 1.8 | 98.2 | 0.0 | 4.07 | 0.99 | 0.82 | 0.92 | 4.18 | 19313 | 2268 | 36 | 0 | 60 | 305 | 0 | logfile |
✘ | 7D1T | 30547 | 2022-12-19 | 2020-09-15 | 1.95 | 1.88 | 1.89 | 1.9 | 0.020 | 1.91 | 31.0 | 0.10 | 18.53 | 0.02 | 1.200 | 3.45 | 2.40 | 1.9 | 97.9 | 0.2 | -0.93 | 0.77 | 0.85 | 6.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 52994 | 5312 | 108 | 0 | 196 | 2432 | 0 | logfile |
✔ | 7QKY | 14057 | 2022-12-11 | 2021-12-19 | 1.86 | 2.10 | 1.91 | 2.0 | 0.011 | 1.75 | 3.0 | 0.09 | 12.76 | 0.01 | 2.522 | 1.04 | 0.61 | 4.7 | 95.3 | 0.0 | -3.08 | 0.33 | 0.75 | 8.32 | 2.0 | 0.003 | 0.69 | 0.0 | 0.05 | 16.56 | 0.00 | 2.218 | 4.85 | 0.61 | 6.2 | 93.8 | 0.0 | -3.18 | 1.00 | 0.39 | 0.84 | 7.35 | 5760 | 396 | 6 | 0 | 0 | 0 | 2862 | logfile |
✘ | 7FiX | 31605 | 2022-12-19 | 2021-08-01 | 1.97 | 2.54 | 1.91 | 2.2 | 0.021 | 1.45 | 0.0 | 0.05 | 17.92 | 0.02 | 1.200 | 5.87 | 0.00 | 2.1 | 97.9 | 0.0 | 1.60 | 0.80 | 0.89 | 5.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 73929 | 7137 | 96 | 0 | 444 | 348 | 0 | logfile |
✔ | 6CVM | 7770 | 2022-12-19 | 2018-03-28 | 1.9 | 2.49 | 1.94 | 2.3 | 0.012 | 0.92 | 0.0 | 0.07 | 10.17 | 0.01 | 2.053 | 4.13 | 0.00 | 2.7 | 97.3 | 0.0 | -1.16 | 0.81 | 0.91 | 7.66 | 2.3 | 0.005 | 0.63 | 0.0 | 0.05 | 13.84 | 0.00 | 1.973 | 7.13 | 0.69 | 2.2 | 97.8 | 0.0 | 0.70 | 0.37 | 0.85 | 0.94 | 6.94 | 37062 | 4084 | 12 | 0 | 20 | 4194 | 0 | logfile |
✘ | 7UT6 | 26756 | 2022-12-18 | 2022-04-26 | 1.91 | 2.02 | 1.94 | 2.0 | 0.042 | 0.66 | 0.0 | 0.05 | 16.31 | 0.01 | 1.975 | 5.33 | 0.93 | 2.4 | 97.6 | 0.0 | 0.26 | 0.75 | 0.87 | 6.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16442 | 1998 | 12 | 0 | 8 | 415 | 0 | logfile |
✔ | 7MBX | 23749 | 2022-12-12 | 2021-04-01 | 1.95 | 2.56 | 1.94 | 2.4 | 0.005 | 0.88 | 1.0 | 0.06 | 11.68 | 0.01 | 2.287 | 2.46 | 0.45 | 1.5 | 98.5 | 0.0 | -0.11 | 0.72 | 0.86 | 4.55 | 2.3 | 0.004 | 0.60 | 0.0 | 0.04 | 15.19 | 0.00 | 2.150 | 6.67 | 1.00 | 1.1 | 98.9 | 0.0 | 1.58 | 0.52 | 0.71 | 0.88 | 4.58 | 8433 | 1065 | 11 | 0 | 2 | 61 | 0 | logfile |
✔ | 6QJM | 4564 | 2022-12-11 | 2019-01-24 | 3.3 | 3.49 | 1.95 | 3.4 | 0.010 | 1.01 | 0.0 | 0.07 | 8.06 | 0.01 | 2.408 | 6.17 | 0.00 | 9.1 | 90.9 | 0.0 | -2.36 | 0.38 | 0.76 | 3.31 | 3.5 | 0.003 | 0.58 | 0.0 | 0.06 | 13.83 | 0.00 | 2.178 | 4.49 | 0.00 | 5.1 | 94.9 | 0.0 | -2.27 | 1.60 | 0.33 | 0.74 | 3.53 | 846 | 111 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZRF | 11380 | 2022-12-11 | 2020-07-13 | 3.6 | 3.66 | 1.96 | 3.6 | 0.014 | 1.03 | 0.0 | 0.05 | 13.43 | 0.00 | 1.993 | 42.14 | 0.00 | 4.9 | 95.1 | 0.0 | -6.22 | 0.67 | 0.79 | 1.84 | 3.7 | 0.003 | 0.73 | 0.0 | 0.04 | 14.44 | 0.00 | 2.284 | 18.31 | 0.42 | 10.6 | 89.4 | 0.0 | -5.84 | 0.52 | 0.69 | 0.81 | 3.45 | 2220 | 300 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8D8R | 27255 | 2022-12-11 | 2022-06-08 | 4.1 | 4.18 | 1.96 | 4.1 | 0.011 | 1.25 | 0.0 | 0.06 | 10.98 | 0.01 | 2.512 | 1.08 | 0.00 | 2.1 | 97.9 | 0.0 | 1.96 | 0.59 | 0.61 | — | 4.1 | 0.004 | 0.78 | 0.0 | 0.05 | 12.85 | 0.01 | 2.191 | 18.44 | 0.00 | 9.3 | 90.7 | 0.0 | -0.81 | 1.91 | 0.63 | 0.67 | — | 3323 | 425 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 7MVY | 24058 | 2022-12-15 | 2021-05-15 | 2.39 | 3.24 | 1.97 | 3.1 | 0.002 | 0.39 | 0.0 | 0.03 | 6.61 | 0.00 | 2.209 | 3.31 | 0.00 | 0.7 | 99.3 | 0.0 | -0.54 | 0.72 | 0.64 | 0.92 | 3.0 | 0.005 | 0.67 | 0.0 | 0.04 | 14.14 | 0.00 | 1.958 | 13.67 | 1.65 | 3.9 | 96.1 | 0.0 | 0.95 | 1.65 | 0.76 | 0.74 | 2.24 | 26555 | 1694 | 2 | 0 | 0 | 0 | 13337 | logfile |
✔ | 7STW | 25437 | 2022-12-13 | 2021-11-15 | 2.37 | 2.44 | 1.98 | 2.4 | 0.002 | 0.50 | 0.0 | 0.04 | 12.97 | 0.00 | 1.947 | 2.01 | 0.00 | 1.2 | 98.8 | 0.0 | 0.17 | 0.74 | 0.80 | 2.93 | 2.4 | 0.003 | 0.54 | 0.0 | 0.04 | 17.56 | 0.00 | 2.051 | 4.48 | 1.16 | 1.8 | 98.2 | 0.0 | 3.01 | 0.62 | 0.75 | 0.83 | 2.27 | 16829 | 2040 | 36 | 0 | 24 | 257 | 0 | logfile |
✔ | 7QKL | 14046 | 2022-12-11 | 2021-12-17 | 2.07 | 2.04 | 1.98 | 2.0 | 0.011 | 2.37 | 0.0 | 0.25 | 12.79 | 0.01 | 2.537 | 0.71 | 0.00 | 3.6 | 96.4 | 0.0 | -1.75 | 0.40 | 0.83 | 7.75 | 2.0 | 0.005 | 0.71 | 0.0 | 0.05 | 17.30 | 0.00 | 2.476 | 5.23 | 0.25 | 2.7 | 97.3 | 0.0 | -1.26 | 2.03 | 0.44 | 0.91 | 8.23 | 3468 | 456 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GKM | 0024 | 2022-12-12 | 2018-05-21 | 3.87 | 4.07 | 2.00 | 4.0 | 0.007 | 0.98 | 0.0 | 0.05 | 10.31 | 0.00 | 2.134 | 11.46 | 0.16 | 9.7 | 90.2 | 0.1 | -3.66 | 0.63 | 0.81 | 2.22 | 4.0 | 0.003 | 0.73 | 0.0 | 0.04 | 13.77 | 0.00 | 2.101 | 21.60 | 0.16 | 8.8 | 91.2 | 0.0 | -0.36 | 1.48 | 0.62 | 0.82 | 2.37 | 10562 | 689 | 4 | 28 | 2 | 0 | 4402 | logfile |