Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QKY	14057	2022-07-03	2021-12-19	1.86	2.10	1.91	2.0	0.011	1.75	3.0	0.09	12.76	0.01	2.522	1.04	0.61	4.7	95.3	0.0	-3.08	0.33	0.75	8.32	2.0	0.003	0.69	0.0	0.05	16.56	0.00	2.218	4.85	0.61	6.2	93.8	0.0	-3.18	1.00	0.40	0.84	7.35	5760	396	6	0	0	0	2862	logfile
✘	6CVM	7770	2022-07-07	2018-03-28	1.9	2.49	1.94	2.3	0.011	0.91	0.0	0.06	10.06	0.01	1.345	3.98	0.00	2.7	97.3	0.0	-1.16	0.81	0.91	7.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37062	4084	12	0	20	4194	0	logfile
✔	7MBX	23749	2022-07-03	2021-04-01	1.95	2.56	1.94	2.4	0.006	0.87	1.0	0.16	12.33	0.01	2.287	2.46	0.45	1.5	98.5	0.0	-0.11	0.72	0.86	4.55	2.3	0.004	0.74	0.0	0.07	15.38	0.00	2.157	6.37	1.00	1.2	98.8	0.0	1.54	0.53	0.72	0.88	4.51	8433	1065	11	0	2	61	0	logfile
✔	6QJM	4564	2022-07-02	2019-01-24	3.3	3.49	1.95	3.4	0.010	1.01	0.0	0.07	8.06	0.01	2.408	6.17	0.00	9.1	90.9	0.0	-2.36	0.38	0.76	3.31	3.5	0.003	0.58	0.0	0.06	13.83	0.00	2.178	4.49	0.00	5.1	94.9	0.0	-2.27	1.60	0.34	0.74	3.53	846	111	3	0	0	0	0	logfile
✘	6ZRF	11380	2022-07-02	2020-07-13	3.6	3.66	1.96	3.6	0.010	0.98	0.0	0.04	13.49	0.00	1.213	42.14	0.00	4.9	95.1	0.0	-6.22	0.67	0.79	1.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2220	300	12	0	0	0	0	logfile
✔	7MVY	24058	2022-07-05	2021-05-15	2.39	3.24	1.97	3.1	0.002	0.39	0.0	0.03	6.61	0.00	2.209	3.31	0.00	0.7	99.3	0.0	-0.54	0.72	0.64	0.92	3.0	0.005	0.69	0.0	0.04	13.97	0.01	1.983	13.40	1.72	3.7	96.3	0.0	0.97	1.62	0.76	0.75	2.16	26555	1694	2	0	0	0	13337	logfile
✘	7Z15	14441	2022-07-07	2022-02-24	1.93	2.40	1.98	2.3	0.011	0.95	9.0	0.06	14.81	0.01	1.215	4.09	0.83	1.6	98.4	0.0	1.32	0.83	0.86	6.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	46112	2888	32	0	16	1171	22357	logfile
✔	7QKL	14046	2022-07-03	2021-12-17	2.07	2.04	1.98	2.0	0.011	2.37	0.0	0.25	12.79	0.01	2.537	0.71	0.00	3.6	96.4	0.0	-1.75	0.40	0.83	7.75	2.0	0.005	0.71	0.0	0.05	17.30	0.00	2.476	5.23	0.25	2.7	97.3	0.0	-1.26	2.03	0.45	0.91	8.23	3468	456	6	0	0	0	0	logfile
✔	7STW	25437	2022-07-04	2021-11-15	2.37	2.44	1.98	2.4	0.002	0.50	0.0	0.04	12.97	0.00	1.947	2.01	0.00	1.2	98.8	0.0	0.17	0.74	0.80	2.93	2.4	0.003	0.54	0.0	0.04	17.56	0.00	2.051	4.48	1.16	1.8	98.2	0.0	3.01	0.62	0.76	0.83	2.27	16829	2040	36	0	24	257	0	logfile
✔	6YL3	10835	2022-07-10	2020-04-06	1.98	2.04	1.99	2.0	0.067	3.60	246.0	0.36	16.35	0.02	1.877	4.58	2.74	5.3	94.4	0.4	-2.46	0.78	0.83	6.40	2.0	0.006	0.81	0.0	0.05	16.29	0.01	1.664	5.82	1.62	4.1	95.8	0.1	-0.24	0.52	0.81	0.86	7.07	150156	9552	84	0	24	3672	73044	logfile
✔	6GKM	0024	2022-07-03	2018-05-21	3.87	4.07	2.00	4.0	0.007	0.98	0.0	0.05	10.31	0.00	2.134	11.46	0.16	9.7	90.2	0.1	-3.66	0.63	0.81	2.22	4.0	0.003	0.73	0.0	0.04	13.77	0.00	2.101	21.60	0.16	8.8	91.2	0.0	-0.36	1.48	0.62	0.82	2.37	10562	689	4	28	2	0	4402	logfile
✔	6SAG	10130	2022-07-03	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.004	0.63	0.0	0.04	15.40	0.01	2.054	3.11	1.17	3.1	96.9	0.0	1.56	0.73	0.60	0.89	6.90	54080	6120	240	120	240	2840	0	logfile
✔	7VD8	31910	2022-07-07	2021-09-06	1.96	1.42	2.01	1.7	0.002	0.54	0.0	0.04	16.17	0.00	2.013	3.17	0.03	2.2	97.8	0.0	5.39	0.75	0.80	7.92	1.7	0.002	0.55	0.0	0.04	16.50	0.00	2.001	2.61	0.05	1.5	98.5	0.0	5.41	0.23	0.72	0.78	8.03	38201	4128	72	0	329	2472	0	logfile
✘	7D1U	30548	2022-07-08	2020-09-15	2.08	1.94	2.04	2.0	0.018	1.83	27.0	0.10	18.50	0.02	1.202	4.10	3.09	2.3	97.5	0.2	-1.36	0.74	0.87	6.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52655	5312	106	0	196	2121	0	logfile
✘	7Z18	14444	2022-07-07	2022-02-24	1.98	2.40	2.04	2.3	0.005	0.86	0.0	0.06	14.94	0.01	1.214	3.52	1.19	1.9	98.1	0.0	1.45	0.79	0.82	5.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37659	2432	18	0	10	2	18660	logfile
✔	6RiU	4898	2022-07-02	2019-04-25	3.9	6.21	2.04	7.0	0.008	1.19	0.0	0.09	15.19	0.01	2.182	5.20	0.00	8.4	91.6	0.0	-5.77	0.59	0.69	0.56	7.1	0.003	0.67	0.0	0.03	16.53	0.00	2.057	13.17	0.00	5.1	94.9	0.0	-0.39	1.43	0.61	0.75	1.30	2882	182	2	0	0	0	1430	logfile
✘	7oY2	13108	2022-07-03	2021-06-23	2.06	2.12	2.05	2.2	0.006	0.92	1.0	0.05	15.87	0.01	1.171	13.44	0.42	0.8	99.2	0.0	1.10	0.77	0.84	5.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7166	858	7	0	7	24	0	logfile
✔	7TU5	26126	2022-07-07	2022-02-02	2.1	1.97	2.06	1.8	0.009	0.85	6.0	0.06	15.88	0.01	1.910	4.49	1.54	1.4	98.6	0.0	0.64	0.84	0.82	4.27	1.7	0.004	0.52	0.0	0.04	16.37	0.00	1.944	5.78	1.95	1.3	98.6	0.1	1.74	0.43	0.87	0.87	4.95	19656	2574	18	0	6	6	0	logfile
✔	6A6B	6988	2022-07-03	2018-06-27	3.07	3.41	2.07	3.4	0.006	1.07	0.0	0.07	7.61	0.00	2.263	7.15	0.00	11.3	88.7	0.0	-3.85	0.53	0.71	3.91	3.4	0.007	0.80	0.0	0.05	13.63	0.00	2.135	20.16	1.11	10.7	89.3	0.0	-3.01	2.16	0.52	0.71	3.25	5256	756	12	0	0	0	0	logfile
✔	7QKH	14042	2022-07-02	2021-12-17	3.17	3.37	2.07	3.5	0.011	2.48	5.0	0.19	15.22	0.01	2.470	2.26	0.00	14.6	85.4	0.0	-3.56	0.37	0.74	3.98	3.5	0.004	0.97	0.0	0.22	15.37	0.00	2.116	8.71	0.00	6.8	93.2	0.0	-2.57	2.30	0.31	0.69	4.34	3105	204	6	0	0	0	1593	logfile

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