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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8Q98 | 18271 | 2023-12-08 | 2023-08-20 | 1.75 | 1.75 | 1.77 | 1.8 | 0.011 | 1.66 | 0.0 | 0.07 | 9.83 | 0.01 | 2.543 | 0.00 | 0.00 | 0.5 | 99.5 | 0.0 | -0.80 | 0.22 | 0.65 | 8.64 | 1.8 | 0.002 | 0.51 | 0.0 | 0.05 | 14.79 | 0.00 | 2.418 | 1.99 | 0.00 | 0.2 | 99.8 | 0.0 | -0.45 | 1.38 | 0.43 | 0.90 | 7.86 | 7032 | 450 | 6 | 0 | 0 | 0 | 3588 | logfile |
✔ | 8A4L | 15148 | 2023-12-08 | 2022-06-12 | 2.68 | 2.73 | 1.77 | 2.8 | 0.004 | 0.65 | 0.0 | 0.05 | 13.43 | 0.00 | 2.385 | 10.11 | 0.00 | 0.0 | 100.0 | 0.0 | -3.33 | 0.52 | 0.85 | 5.71 | 2.8 | 0.008 | 0.70 | 0.0 | 0.06 | 17.48 | 0.00 | 2.255 | 11.17 | 2.95 | 3.4 | 96.6 | 0.0 | -3.61 | 1.57 | 0.54 | 0.88 | 5.79 | 7755 | 1125 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 6R4R | 4727 | 2023-12-07 | 2019-03-23 | 3.4 | 3.01 | 1.77 | 3.8 | 0.008 | 1.43 | 0.0 | 0.08 | 10.87 | 0.01 | 2.308 | 6.73 | 0.00 | 12.0 | 88.0 | 0.0 | -5.16 | 0.32 | 0.64 | 5.08 | 3.6 | 0.005 | 0.81 | 0.0 | 0.05 | 16.69 | 0.00 | 2.109 | 15.14 | 0.68 | 9.1 | 90.9 | 0.0 | -4.84 | 3.88 | 0.31 | 0.68 | 3.65 | 4312 | 539 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8HF7 | 34715 | 2023-12-08 | 2022-11-09 | 3.8 | 4.66 | 1.82 | 4.2 | 0.006 | 1.34 | 2.0 | 0.07 | 14.02 | 0.01 | 2.294 | 7.91 | 0.61 | 5.9 | 93.5 | 0.6 | -3.03 | 0.63 | 0.74 | 0.62 | 4.3 | 0.003 | 0.77 | 0.0 | 0.04 | 15.80 | 0.00 | 2.159 | 15.06 | 0.20 | 6.5 | 93.1 | 0.4 | 0.24 | 0.58 | 0.64 | 0.77 | 0.49 | 8978 | 1126 | 4 | 0 | 26 | 0 | 0 | logfile |
✘ | 7EFD | 31084 | 2023-12-07 | 2021-03-21 | 1.77 | 1.78 | 1.82 | 1.9 | 0.033 | 3.16 | 12.0 | 0.09 | 15.32 | 0.02 | 0.001 | 1.61 | 2.15 | 1.7 | 97.5 | 0.8 | -0.54 | 0.74 | 0.82 | 5.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4004 | 480 | 4 | 0 | 4 | 156 | 0 | logfile |
✔ | 7QK5 | 14038 | 2023-12-09 | 2021-12-17 | 1.92 | 1.67 | 1.83 | 2.2 | 0.011 | 1.89 | 4.0 | 0.10 | 10.96 | 0.01 | 2.401 | 0.10 | 0.00 | 4.5 | 95.5 | 0.0 | -1.58 | 0.32 | 0.78 | 6.85 | 2.2 | 0.003 | 0.62 | 0.0 | 0.05 | 18.17 | 0.00 | 2.236 | 3.44 | 2.74 | 3.4 | 96.6 | 0.0 | -1.74 | 1.48 | 0.36 | 0.82 | 7.31 | 10485 | 666 | 18 | 0 | 36 | 0 | 5337 | logfile |
✔ | 7oZH | 13124 | 2023-12-07 | 2021-06-28 | 3.02 | 3.20 | 1.84 | 3.3 | 0.024 | 1.40 | 0.0 | 0.09 | 7.44 | 0.01 | 2.546 | 14.72 | 0.00 | 5.4 | 94.6 | 0.0 | -2.78 | 0.33 | 0.60 | 4.68 | 3.2 | 0.004 | 0.69 | 0.0 | 0.05 | 15.03 | 0.00 | 2.382 | 17.11 | 2.05 | 8.2 | 91.8 | 0.0 | -2.61 | 2.53 | 0.40 | 0.69 | 0.33 | 3890 | 580 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Y1A | 10669 | 2023-12-07 | 2020-02-11 | 4.2 | 3.60 | 1.84 | 4.3 | 0.005 | 1.09 | 0.0 | 0.07 | 9.42 | 0.00 | 2.509 | 15.01 | 0.00 | 4.3 | 95.7 | 0.0 | -4.99 | 0.53 | 0.63 | — | 4.2 | 0.005 | 0.75 | 0.0 | 0.04 | 11.01 | 0.00 | 2.047 | 15.36 | 0.00 | 9.8 | 90.2 | 0.0 | -4.85 | 1.54 | 0.57 | 0.75 | — | 2960 | 400 | 32 | 0 | 16 | 0 | 0 | logfile |
✔ | 7Xo0 | 33332 | 2023-12-07 | 2022-04-30 | 3.0 | 2.48 | 1.85 | 3.1 | 0.001 | 0.39 | 0.0 | 0.05 | 16.62 | 0.00 | 2.280 | 4.76 | 0.00 | 5.0 | 95.0 | 0.0 | -2.66 | 0.47 | 0.87 | 7.11 | 3.1 | 0.003 | 0.43 | 0.0 | 0.05 | 17.01 | 0.00 | 2.241 | 5.71 | 1.94 | 5.8 | 94.2 | 0.0 | -2.86 | 0.38 | 0.47 | 0.87 | 6.51 | 2550 | 372 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Xo1 | 33333 | 2023-12-07 | 2022-04-30 | 3.0 | 2.71 | 1.85 | 3.1 | 0.002 | 0.53 | 0.0 | 0.05 | 16.42 | 0.00 | 2.269 | 6.86 | 0.00 | 5.0 | 95.0 | 0.0 | -2.46 | 0.45 | 0.86 | 4.75 | 3.1 | 0.003 | 0.59 | 0.0 | 0.05 | 17.68 | 0.00 | 2.230 | 2.29 | 2.33 | 6.4 | 93.6 | 0.0 | -2.11 | 1.59 | 0.43 | 0.86 | 5.91 | 2550 | 372 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QJW | 14024 | 2023-12-08 | 2021-12-17 | 2.81 | 2.81 | 1.88 | 2.9 | 0.012 | 2.09 | 0.0 | 0.10 | 11.96 | 0.01 | 2.556 | 0.00 | 0.00 | 2.3 | 96.3 | 1.4 | -1.19 | 0.34 | 0.72 | 5.41 | 2.8 | 0.003 | 0.65 | 0.0 | 0.05 | 15.89 | 0.00 | 2.348 | 3.84 | 0.25 | 3.7 | 96.3 | 0.0 | -1.86 | 1.59 | 0.39 | 0.78 | 4.70 | 7032 | 450 | 6 | 0 | 0 | 0 | 3588 | logfile |
✔ | 8oRM | 17129 | 2023-12-07 | 2023-04-14 | 1.9 | 1.83 | 1.88 | 1.9 | 0.004 | 0.58 | 0.0 | 0.04 | 16.75 | 0.00 | 2.236 | 3.99 | 0.90 | 1.6 | 98.2 | 0.2 | 1.88 | 0.70 | 0.81 | 5.96 | 1.9 | 0.008 | 0.82 | 0.0 | 0.05 | 16.78 | 0.01 | 2.122 | 6.33 | 1.44 | 1.3 | 98.5 | 0.2 | 0.97 | 0.19 | 0.71 | 0.83 | 5.85 | 5341 | 632 | 7 | 0 | 2 | 210 | 0 | logfile |
✔ | 8Q9F | 18279 | 2023-12-08 | 2023-08-20 | 1.91 | 1.89 | 1.88 | 1.9 | 0.011 | 1.78 | 0.0 | 0.09 | 10.30 | 0.01 | 2.515 | 0.00 | 0.00 | 0.2 | 99.8 | 0.0 | -2.15 | 0.31 | 0.73 | 7.64 | 1.9 | 0.004 | 0.67 | 0.0 | 0.05 | 16.12 | 0.00 | 2.225 | 4.39 | 0.28 | 2.7 | 97.3 | 0.0 | -2.12 | 1.84 | 0.44 | 0.86 | 7.15 | 6390 | 414 | 6 | 0 | 0 | 0 | 3258 | logfile |
✔ | 7QV5 | 14167 | 2023-12-07 | 2022-01-19 | 3.0 | 3.03 | 1.88 | 3.0 | 0.085 | 0.44 | 0.0 | 0.06 | 9.44 | 0.00 | 2.689 | 1.08 | 0.00 | 6.2 | 93.8 | 0.0 | -2.64 | 0.46 | 0.86 | 7.89 | 3.1 | 0.002 | 0.35 | 0.0 | 0.06 | 12.46 | 0.00 | 2.557 | 6.30 | 0.00 | 2.1 | 97.9 | 0.0 | -1.71 | 0.87 | 0.49 | 0.90 | 6.99 | 5562 | 342 | 27 | 0 | 18 | 0 | 2997 | logfile |
✔ | 7P6A | 13223 | 2023-12-07 | 2021-07-15 | 1.9 | 1.91 | 1.88 | 1.9 | 0.004 | 0.72 | 0.0 | 0.06 | 12.30 | 0.01 | 2.247 | 3.33 | 0.00 | 3.8 | 96.2 | 0.0 | -3.07 | 0.51 | 0.86 | 7.13 | 1.9 | 0.003 | 0.65 | 0.0 | 0.05 | 14.15 | 0.00 | 2.293 | 4.99 | 0.00 | 4.7 | 95.3 | 0.0 | -2.61 | 0.38 | 0.55 | 0.89 | 7.74 | 4166 | 540 | 10 | 0 | 0 | 76 | 0 | logfile |
✘ | 8BQV | 16188 | 2023-12-08 | 2023-01-18 | 2.0 | 1.96 | 1.89 | 1.9 | 0.008 | 1.01 | 0.0 | 0.07 | 8.75 | 0.00 | 0.000 | 15.01 | 0.00 | 6.8 | 93.2 | 0.0 | -2.59 | 0.54 | 0.77 | 8.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8595 | 1155 | 45 | 0 | 105 | 120 | 0 | logfile |
✔ | 8Q8C | 18250 | 2023-12-08 | 2023-08-18 | 1.92 | 1.98 | 1.90 | 2.0 | 0.011 | 1.66 | 0.0 | 0.08 | 10.69 | 0.01 | 2.505 | 0.00 | 0.27 | 1.2 | 98.8 | 0.0 | -1.44 | 0.21 | 0.65 | 7.52 | 1.9 | 0.004 | 0.59 | 0.0 | 0.05 | 16.37 | 0.00 | 2.146 | 1.97 | 0.54 | 1.7 | 98.3 | 0.0 | -1.10 | 1.98 | 0.39 | 0.90 | 7.85 | 6618 | 429 | 6 | 0 | 0 | 0 | 3372 | logfile |
✔ | 7QKY | 14057 | 2023-12-07 | 2021-12-19 | 1.86 | 2.10 | 1.91 | 2.0 | 0.011 | 1.75 | 3.0 | 0.09 | 12.76 | 0.01 | 2.522 | 1.04 | 0.61 | 4.7 | 95.3 | 0.0 | -3.08 | 0.33 | 0.75 | 8.32 | 2.0 | 0.004 | 0.69 | 0.0 | 0.05 | 16.18 | 0.00 | 2.222 | 5.20 | 0.30 | 6.2 | 93.8 | 0.0 | -3.17 | 1.24 | 0.39 | 0.84 | 7.56 | 5760 | 396 | 6 | 0 | 0 | 0 | 2862 | logfile |
✔ | 8Q27 | 18070 | 2023-12-08 | 2023-08-01 | 2.02 | 1.98 | 1.92 | 2.0 | 0.011 | 1.74 | 0.0 | 0.08 | 11.92 | 0.01 | 2.517 | 0.00 | 1.27 | 2.3 | 97.7 | 0.0 | -1.63 | 0.21 | 0.69 | 8.02 | 2.0 | 0.002 | 0.56 | 0.0 | 0.05 | 17.05 | 0.00 | 2.209 | 1.86 | 0.00 | 2.9 | 97.1 | 0.0 | -1.35 | 1.20 | 0.34 | 0.88 | 7.27 | 7002 | 453 | 6 | 0 | 0 | 0 | 3567 | logfile |
✔ | 8F0K | 28759 | 2023-12-09 | 2022-11-03 | 1.9 | 1.70 | 1.92 | 1.9 | 0.010 | 0.59 | 0.0 | 0.04 | 14.28 | 0.01 | 2.252 | 4.34 | 0.91 | 1.2 | 98.8 | 0.0 | -1.70 | 0.50 | 0.67 | 4.75 | 1.9 | 0.003 | 0.62 | 0.0 | 0.04 | 16.28 | 0.00 | 2.202 | 6.19 | 0.91 | 2.2 | 97.8 | 0.0 | 1.51 | 0.64 | 0.60 | 0.78 | 4.98 | 10553 | 1272 | 12 | 0 | 18 | 39 | 0 | logfile |