Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Xo0	33332	2022-12-11	2022-04-30	3.0	2.48	1.85	3.1	0.001	0.39	0.0	0.05	16.62	0.00	2.280	4.76	0.00	5.0	95.0	0.0	-2.66	0.47	0.87	7.11	3.1	0.006	0.56	0.0	0.06	17.26	0.00	2.220	6.29	2.33	10.3	89.7	0.0	-3.10	0.38	0.47	0.88	7.05	2550	372	6	0	0	0	0	logfile
✔	6S61	10101	2022-12-14	2019-07-02	1.84	1.89	1.85	1.9	0.011	1.36	0.0	0.06	12.21	0.01	0.312	2.62	1.29	1.8	98.2	0.0	3.69	0.77	0.86	8.46	1.9	0.003	0.57	0.0	0.03	14.82	0.00	1.798	5.19	0.65	1.8	98.2	0.0	4.54	0.74	0.80	0.90	8.65	71060	4128	72	0	30	3854	32904	logfile
✘	7UT7	26757	2022-12-18	2022-04-26	1.91	1.94	1.87	2.0	0.042	0.66	0.0	0.05	16.33	0.01	1.975	5.18	0.87	2.4	97.6	0.0	0.26	0.72	0.85	7.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16442	1998	12	0	8	415	0	logfile
✔	7QJW	14024	2022-12-11	2021-12-17	2.81	2.81	1.88	2.9	0.012	2.09	0.0	0.10	11.96	0.01	2.556	0.85	0.00	2.3	96.3	1.4	-1.19	0.34	0.72	5.41	2.8	0.002	0.61	0.0	0.05	15.46	0.00	2.213	3.70	0.51	3.0	97.0	0.0	-1.53	1.60	0.38	0.77	4.34	7032	450	6	0	0	0	3588	logfile
✔	7P6A	13223	2022-12-11	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.003	0.65	0.0	0.05	14.09	0.00	2.291	4.28	0.00	4.7	95.3	0.0	-2.61	0.82	0.55	0.89	7.80	4166	540	10	0	0	76	0	logfile
✔	7QV5	14167	2022-12-11	2022-01-19	3.0	3.03	1.88	3.0	0.010	0.44	0.0	0.06	9.44	0.00	2.689	1.08	0.00	6.2	93.8	0.0	-2.64	0.46	0.86	7.89	3.1	0.002	0.35	0.0	0.06	12.41	0.00	2.460	1.08	0.00	2.1	97.9	0.0	-1.42	0.86	0.50	0.90	6.99	5562	342	27	0	18	0	2997	logfile
✔	7QEQ	13937	2022-12-14	2021-12-03	1.9	2.38	1.89	2.1	0.009	0.61	0.0	0.04	12.54	0.00	2.181	2.19	1.18	1.1	98.9	0.0	1.60	0.82	0.90	4.56	2.1	0.003	0.58	0.0	0.04	14.03	0.00	2.247	3.05	1.13	1.8	98.2	0.0	4.07	0.99	0.82	0.92	4.18	19313	2268	36	0	60	305	0	logfile
✘	7D1T	30547	2022-12-19	2020-09-15	1.95	1.88	1.89	1.9	0.020	1.91	31.0	0.10	18.53	0.02	1.200	3.45	2.40	1.9	97.9	0.2	-0.93	0.77	0.85	6.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52994	5312	108	0	196	2432	0	logfile
✔	7QKY	14057	2022-12-11	2021-12-19	1.86	2.10	1.91	2.0	0.011	1.75	3.0	0.09	12.76	0.01	2.522	1.04	0.61	4.7	95.3	0.0	-3.08	0.33	0.75	8.32	2.0	0.003	0.69	0.0	0.05	16.56	0.00	2.218	4.85	0.61	6.2	93.8	0.0	-3.18	1.00	0.39	0.84	7.35	5760	396	6	0	0	0	2862	logfile
✘	7FiX	31605	2022-12-19	2021-08-01	1.97	2.54	1.91	2.2	0.021	1.45	0.0	0.05	17.92	0.02	1.200	5.87	0.00	2.1	97.9	0.0	1.60	0.80	0.89	5.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	73929	7137	96	0	444	348	0	logfile
✔	6CVM	7770	2022-12-19	2018-03-28	1.9	2.49	1.94	2.3	0.012	0.92	0.0	0.07	10.17	0.01	2.053	4.13	0.00	2.7	97.3	0.0	-1.16	0.81	0.91	7.66	2.3	0.005	0.63	0.0	0.05	13.84	0.00	1.973	7.13	0.69	2.2	97.8	0.0	0.70	0.37	0.85	0.94	6.94	37062	4084	12	0	20	4194	0	logfile
✘	7UT6	26756	2022-12-18	2022-04-26	1.91	2.02	1.94	2.0	0.042	0.66	0.0	0.05	16.31	0.01	1.975	5.33	0.93	2.4	97.6	0.0	0.26	0.75	0.87	6.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16442	1998	12	0	8	415	0	logfile
✔	7MBX	23749	2022-12-12	2021-04-01	1.95	2.56	1.94	2.4	0.005	0.88	1.0	0.06	11.68	0.01	2.287	2.46	0.45	1.5	98.5	0.0	-0.11	0.72	0.86	4.55	2.3	0.004	0.60	0.0	0.04	15.19	0.00	2.150	6.67	1.00	1.1	98.9	0.0	1.58	0.52	0.71	0.88	4.58	8433	1065	11	0	2	61	0	logfile
✔	6QJM	4564	2022-12-11	2019-01-24	3.3	3.49	1.95	3.4	0.010	1.01	0.0	0.07	8.06	0.01	2.408	6.17	0.00	9.1	90.9	0.0	-2.36	0.38	0.76	3.31	3.5	0.003	0.58	0.0	0.06	13.83	0.00	2.178	4.49	0.00	5.1	94.9	0.0	-2.27	1.60	0.33	0.74	3.53	846	111	3	0	0	0	0	logfile
✔	6ZRF	11380	2022-12-11	2020-07-13	3.6	3.66	1.96	3.6	0.014	1.03	0.0	0.05	13.43	0.00	1.993	42.14	0.00	4.9	95.1	0.0	-6.22	0.67	0.79	1.84	3.7	0.003	0.73	0.0	0.04	14.44	0.00	2.284	18.31	0.42	10.6	89.4	0.0	-5.84	0.52	0.69	0.81	3.45	2220	300	12	0	0	0	0	logfile
✔	8D8R	27255	2022-12-11	2022-06-08	4.1	4.18	1.96	4.1	0.011	1.25	0.0	0.06	10.98	0.01	2.512	1.08	0.00	2.1	97.9	0.0	1.96	0.59	0.61	—	4.1	0.004	0.78	0.0	0.05	12.85	0.01	2.191	18.44	0.00	9.3	90.7	0.0	-0.81	1.91	0.63	0.67	—	3323	425	3	0	1	0	0	logfile
✔	7MVY	24058	2022-12-15	2021-05-15	2.39	3.24	1.97	3.1	0.002	0.39	0.0	0.03	6.61	0.00	2.209	3.31	0.00	0.7	99.3	0.0	-0.54	0.72	0.64	0.92	3.0	0.005	0.67	0.0	0.04	14.14	0.00	1.958	13.67	1.65	3.9	96.1	0.0	0.95	1.65	0.76	0.74	2.24	26555	1694	2	0	0	0	13337	logfile
✔	7STW	25437	2022-12-13	2021-11-15	2.37	2.44	1.98	2.4	0.002	0.50	0.0	0.04	12.97	0.00	1.947	2.01	0.00	1.2	98.8	0.0	0.17	0.74	0.80	2.93	2.4	0.003	0.54	0.0	0.04	17.56	0.00	2.051	4.48	1.16	1.8	98.2	0.0	3.01	0.62	0.75	0.83	2.27	16829	2040	36	0	24	257	0	logfile
✔	7QKL	14046	2022-12-11	2021-12-17	2.07	2.04	1.98	2.0	0.011	2.37	0.0	0.25	12.79	0.01	2.537	0.71	0.00	3.6	96.4	0.0	-1.75	0.40	0.83	7.75	2.0	0.005	0.71	0.0	0.05	17.30	0.00	2.476	5.23	0.25	2.7	97.3	0.0	-1.26	2.03	0.44	0.91	8.23	3468	456	6	0	0	0	0	logfile
✔	6GKM	0024	2022-12-12	2018-05-21	3.87	4.07	2.00	4.0	0.007	0.98	0.0	0.05	10.31	0.00	2.134	11.46	0.16	9.7	90.2	0.1	-3.66	0.63	0.81	2.22	4.0	0.003	0.73	0.0	0.04	13.77	0.00	2.101	21.60	0.16	8.8	91.2	0.0	-0.36	1.48	0.62	0.82	2.37	10562	689	4	28	2	0	4402	logfile

• ← previous
• Page 2 of 443
• next →