Table showing results for February 2023

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7P13	13154	2023-02-21	2021-07-01	2.29	1.96	2.28	1.7	0.016	1.06	0.0	0.07	14.07	0.01	2.430	5.24	0.00	3.3	96.7	0.0	2.06	0.82	0.87	4.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13727	1743	7	0	0	0	154	logfile
✔	7XW9	33494	2023-02-18	2022-05-26	2.7	2.10	2.82	1.8	0.005	0.69	0.0	0.05	12.26	0.01	2.167	6.26	0.00	3.5	96.5	0.0	0.37	0.78	0.77	3.77	1.8	0.003	0.58	0.0	0.04	15.18	0.00	2.179	7.09	2.45	3.9	96.1	0.0	1.10	0.36	0.79	0.80	3.50	8988	1143	6	0	1	0	0	logfile
✔	7V9L	31824	2023-02-18	2021-08-26	2.6	2.13	—	1.8	0.004	0.69	0.0	0.05	13.08	0.01	2.120	3.81	0.00	3.8	96.2	0.0	0.00	0.67	0.70	3.73	1.8	0.004	0.61	0.0	0.04	15.75	0.00	2.140	11.25	1.84	2.3	97.7	0.0	0.73	0.50	0.77	0.79	3.06	8047	1019	5	0	0	0	0	logfile
✔	7TBG	25798	2023-02-26	2021-12-22	2.5	2.10	2.44	1.8	0.006	0.76	0.0	0.05	13.03	0.01	2.268	1.89	0.57	3.2	96.8	0.0	0.60	0.75	0.79	4.65	1.8	0.005	0.59	0.0	0.04	16.05	0.00	2.102	5.00	1.23	2.0	98.0	0.0	2.29	1.13	0.77	0.82	3.61	19679	1190	6	0	5	20	9858	logfile
✔	7C7S	30301	2023-02-19	2020-05-26	2.9	2.38	—	1.8	0.006	0.77	0.0	0.14	13.59	0.01	2.153	7.86	0.00	3.7	96.3	0.0	-2.62	0.83	0.80	2.82	1.8	0.004	0.72	0.0	0.04	15.82	0.00	2.174	9.73	2.63	4.3	95.7	0.0	-0.23	0.58	0.85	0.83	2.74	10915	1355	4	0	9	0	0	logfile
✔	7FiJ	31599	2023-02-17	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.6	0.003	0.71	0.0	0.04	10.87	0.00	2.234	8.95	1.25	10.6	89.4	0.0	-0.78	0.63	0.60	0.54	2.95	3061	561	1	0	0	0	0	logfile
✔	7RPo	24618	2023-02-19	2021-08-03	4.16	2.77	—	1.8	0.003	0.50	0.0	0.04	16.86	0.00	1.759	6.97	1.64	8.5	91.5	0.0	-2.01	0.74	0.71	—	1.8	0.003	0.71	0.0	0.04	18.44	0.00	2.035	12.12	0.10	9.2	90.8	0.0	-2.17	1.73	0.75	0.71	—	10602	1179	9	62	5	0	0	logfile
✔	7WiG	32529	2023-02-18	2022-01-03	2.7	2.14	—	1.8	0.006	0.75	0.0	0.05	13.13	0.01	2.192	6.75	0.00	2.0	98.0	0.0	1.11	0.78	0.77	3.19	1.8	0.002	0.90	0.0	0.04	15.48	0.00	2.195	5.51	1.13	2.0	98.0	0.0	1.42	0.33	0.79	0.80	2.94	8931	1139	6	0	1	0	0	logfile
✔	7VD9	31911	2023-02-22	2021-09-06	2.29	1.75	2.28	1.8	0.002	0.54	0.0	0.04	17.25	0.00	2.194	7.80	2.33	3.8	96.2	0.0	0.41	0.58	0.72	3.68	1.8	0.003	0.57	0.0	0.04	17.52	0.01	2.206	7.90	2.62	3.9	96.1	0.0	0.00	0.30	0.58	0.73	3.61	16426	1991	8	0	8	0	0	logfile
✘	7A5V	11657	2023-02-23	2020-08-22	1.7	1.73	1.69	1.8	0.014	1.59	0.0	0.09	13.54	0.02	0.000	2.35	0.48	2.2	97.8	0.0	-0.05	0.61	0.79	6.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21155	2275	30	0	85	1015	0	logfile
✔	7M3G	23654	2023-02-20	2021-03-18	2.5	2.29	—	1.8	0.007	0.95	14.0	0.06	16.94	0.01	2.281	2.21	0.93	3.0	97.0	0.0	-2.02	0.84	0.85	3.70	1.8	0.004	0.61	15.0	0.05	17.38	0.00	2.178	4.04	2.29	3.8	96.2	0.0	-0.18	0.32	0.85	0.87	3.53	13298	1627	11	0	41	0	0	logfile
✔	7UUR	26801	2023-02-21	2022-04-28	1.67	1.76	1.67	1.8	0.061	2.45	4.0	0.98	14.57	0.01	1.674	7.19	0.44	2.5	97.2	0.2	-0.89	0.76	0.87	7.87	1.8	0.007	2.49	2.0	0.07	14.70	0.01	1.611	10.87	0.29	2.1	97.9	0.0	0.19	0.27	0.77	0.88	7.79	13683	1668	12	0	18	603	0	logfile
✔	7Z0o	14428	2023-02-20	2022-02-23	2.8	1.99	2.70	1.8	0.004	0.66	0.0	0.04	19.63	0.00	2.189	6.20	1.42	1.7	98.3	0.0	1.08	0.68	0.73	3.27	1.7	0.004	0.60	0.0	0.04	21.27	0.00	2.148	9.25	3.29	2.0	98.0	0.0	1.65	0.48	0.77	0.79	3.26	11864	1256	10	78	0	0	0	logfile
✔	8DWG	27753	2023-02-18	2022-08-01	2.71	2.08	2.72	1.8	0.006	0.64	0.0	0.05	12.61	0.00	2.106	6.62	0.00	4.5	95.5	0.0	-1.14	0.78	0.81	4.92	1.8	0.005	0.63	0.0	0.04	15.14	0.00	2.082	6.68	1.52	5.0	95.0	0.0	0.71	0.32	0.80	0.84	3.67	8350	1101	7	0	1	0	0	logfile
✔	7N1X	24126	2023-02-25	2021-05-28	4.0	2.34	—	1.8	0.013	1.88	13.0	0.14	14.66	0.01	1.484	9.88	1.97	8.1	91.3	0.6	-2.39	0.80	0.69	—	1.8	0.005	0.84	0.0	0.05	16.27	0.01	2.115	16.15	0.77	5.4	94.6	0.0	-1.23	0.73	0.80	0.69	—	26810	3257	35	0	95	0	0	logfile
✔	7X2A	32963	2023-02-27	2022-02-25	2.49	2.71	—	1.8	0.013	1.51	6.0	0.11	12.93	0.00	1.682	6.97	6.68	2.2	97.6	0.2	2.33	0.57	0.42	1.04	1.8	0.006	0.90	0.0	0.05	15.49	0.01	1.837	16.08	2.47	4.2	95.7	0.1	-0.54	1.83	0.83	0.81	2.22	26800	3486	5	0	0	0	0	logfile
✔	7TDF	25827	2023-02-26	2021-12-31	2.7	2.10	2.66	1.9	0.006	0.74	0.0	0.05	12.56	0.01	2.148	2.71	0.19	3.5	96.5	0.0	0.06	0.74	0.77	4.39	1.9	0.004	0.59	0.0	0.04	15.48	0.00	2.065	5.37	0.95	2.5	97.5	0.0	2.22	1.13	0.76	0.81	3.66	19566	1188	2	0	0	0	9792	logfile
✔	7SQG	25384	2023-02-18	2021-11-05	2.6	2.14	—	1.9	0.004	0.56	0.0	0.05	14.80	0.00	2.423	3.35	0.00	3.0	97.0	0.0	1.39	0.75	0.77	3.39	1.8	0.005	0.62	0.0	0.05	18.80	0.00	2.061	7.55	1.45	3.7	96.3	0.0	1.49	0.97	0.81	0.83	3.37	6630	810	6	0	12	0	0	logfile
✔	8E9Y	27968	2023-02-18	2022-08-27	2.79	2.12	2.79	1.9	0.005	0.81	0.0	0.05	13.31	0.00	2.217	12.56	0.12	5.2	94.8	0.0	-1.06	0.76	0.75	3.19	1.9	0.003	0.59	0.0	0.04	15.56	0.00	2.203	9.60	1.73	4.1	95.8	0.1	-0.25	0.36	0.76	0.76	2.63	8479	1123	6	0	1	0	0	logfile
✔	8E9X	27967	2023-02-18	2022-08-27	2.7	2.10	2.72	1.9	0.004	0.60	0.0	0.04	12.62	0.00	2.200	6.28	0.00	4.2	95.8	0.0	-0.15	0.78	0.79	3.99	1.9	0.004	0.56	0.0	0.04	15.26	0.00	2.233	7.19	1.61	3.8	96.2	0.0	0.55	0.34	0.80	0.82	3.68	8380	1109	6	0	1	0	0	logfile

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