Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UWN	26837	2023-07-05	2022-05-03	3.01	2.26	3.04	1.6	0.004	0.64	0.0	0.04	16.59	0.00	2.105	14.51	2.21	6.1	93.9	0.0	-1.09	0.66	0.63	1.06	1.5	0.004	0.65	0.0	0.05	16.70	0.00	2.117	15.57	0.51	6.0	94.0	0.0	-1.14	0.33	0.66	0.64	0.94	10602	1325	12	0	11	0	0	logfile
✔	7M4U	23666	2023-07-03	2021-03-22	2.71	1.78	—	1.6	0.006	0.58	2.0	0.04	14.94	0.02	1.771	4.42	0.20	3.1	96.7	0.2	1.08	0.79	0.76	3.70	1.6	0.004	0.76	0.0	0.04	16.09	0.01	1.732	5.99	2.36	3.6	96.2	0.2	0.59	1.72	0.82	0.81	3.40	51764	2386	27	1528	84	191	0	logfile
✔	7M4Z	23671	2023-07-14	2021-03-22	2.92	1.87	—	1.6	0.005	0.54	0.0	0.03	15.14	0.02	1.833	4.61	0.00	3.0	96.9	0.2	1.09	0.77	0.72	2.81	2.5	0.004	0.69	0.0	0.04	16.16	0.01	1.686	6.98	1.94	3.4	96.4	0.2	0.27	0.92	0.80	0.76	2.74	138172	5625	70	4373	190	229	0	logfile
✔	7SEP	25074	2023-07-04	2021-10-01	3.8	2.53	3.76	1.6	0.006	0.66	0.0	0.05	12.76	0.01	2.155	10.23	8.22	5.0	95.0	0.0	-0.19	0.72	0.72	2.36	2.0	0.004	0.75	0.0	0.05	17.02	0.01	2.160	15.37	0.72	3.5	96.5	0.0	-0.44	0.96	0.72	0.71	2.13	7641	930	2	0	0	0	0	logfile
✔	7SiM	25144	2023-07-06	2021-10-14	2.7	2.00	—	1.6	0.005	0.71	0.0	0.05	13.50	0.00	2.302	7.90	0.07	1.7	98.3	0.0	0.36	0.74	0.72	3.19	1.6	0.003	0.55	0.0	0.04	15.84	0.00	2.196	9.00	0.81	1.6	98.4	0.0	0.50	0.93	0.75	0.76	3.23	12826	1564	8	0	28	0	0	logfile
✔	8BPA	16147	2023-07-05	2022-11-16	3.7	2.50	3.80	1.6	0.005	0.85	0.0	0.05	18.50	0.01	2.127	18.60	0.97	4.0	96.0	0.0	0.00	0.69	0.65	0.97	1.6	0.003	0.80	0.0	0.04	18.78	0.01	2.140	16.42	0.53	4.4	95.6	0.0	0.14	1.61	0.69	0.66	1.15	10393	1280	6	0	7	0	0	logfile
✔	7o6E	12738	2023-07-16	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.49	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.003	0.47	0.0	0.03	18.14	0.00	2.203	3.42	0.38	0.7	99.3	0.0	4.41	0.27	0.88	0.90	5.26	35304	4248	48	0	0	1392	0	logfile
✔	7M4X	23669	2023-07-15	2021-03-22	2.66	1.75	—	1.6	0.006	0.56	0.0	0.03	15.11	0.01	1.789	3.62	0.00	2.5	97.4	0.1	1.32	0.77	0.73	3.46	1.6	0.004	0.72	0.0	0.04	16.10	0.01	1.684	5.41	2.69	3.2	96.7	0.1	0.26	0.35	0.79	0.76	3.35	139446	5528	73	4453	194	552	0	logfile
✔	7YLA	33904	2023-07-10	2022-07-25	2.52	2.04	2.52	1.6	0.006	0.71	0.0	0.04	14.58	0.01	1.980	8.85	0.75	4.3	95.5	0.3	-0.94	0.81	0.81	3.97	1.6	0.007	0.66	0.0	0.04	15.01	0.01	1.842	11.07	1.04	4.6	95.3	0.1	-0.79	1.10	0.83	0.84	3.60	125784	3775	36	2994	6	0	32052	logfile
✔	7UAF	26423	2023-07-08	2022-03-12	2.4	2.07	3.04	1.6	0.012	1.82	13.0	0.10	13.98	0.02	1.783	1.19	0.16	3.1	96.9	0.0	-0.18	0.80	0.80	5.45	1.6	0.004	0.64	0.0	0.04	17.33	0.00	1.873	6.71	2.11	3.7	96.3	0.0	-0.06	1.19	0.83	0.83	4.25	17864	2131	22	0	58	0	0	logfile
✔	8CS9	26960	2023-07-05	2022-05-12	2.74	1.95	—	1.6	0.006	0.85	0.0	0.05	18.10	0.01	2.218	10.20	3.66	2.2	97.5	0.3	0.33	0.82	0.81	3.50	1.6	0.003	0.66	0.0	0.04	17.83	0.00	2.112	8.08	2.56	1.7	98.3	0.0	1.72	0.39	0.83	0.83	3.42	60944	7677	39	0	27	268	0	logfile
✘	8AG4	15415	2023-07-06	2022-07-19	2.46	2.04	2.48	1.7	0.003	0.49	0.0	0.04	13.59	0.00	2.170	5.34	0.00	3.9	96.1	0.0	0.77	0.82	0.83	4.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11155	1384	4	0	0	0	0	logfile
✔	8CPV	16787	2023-07-16	2023-03-03	1.76	1.73	1.80	1.7	0.006	0.91	0.0	0.07	14.41	0.01	2.182	2.58	0.00	1.0	99.0	0.0	2.15	0.78	0.84	8.93	1.7	0.002	0.49	0.0	0.03	14.99	0.00	2.274	3.00	0.00	1.8	98.2	0.0	4.87	1.19	0.81	0.87	8.51	35855	4152	72	0	38	1737	0	logfile
✔	7oUG	13076	2023-07-07	2021-06-11	3.1	2.33	3.12	1.7	0.004	0.74	0.0	0.04	17.59	0.01	1.769	5.66	0.14	2.4	97.6	0.0	0.28	0.78	0.75	2.41	1.7	0.003	0.66	0.0	0.04	19.44	0.00	1.919	9.45	0.48	2.1	97.9	0.0	0.04	0.63	0.78	0.79	2.36	15090	1664	16	80	10	8	0	logfile
✔	7UA4	26414	2023-07-24	2022-03-11	2.93	3.30	—	1.7	0.003	0.71	0.0	0.04	14.43	0.01	1.425	10.26	1.34	3.6	96.3	0.1	1.05	0.87	0.82	3.16	1.7	0.003	0.67	1.0	0.04	15.15	0.00	2.076	9.43	0.41	3.7	96.2	0.1	1.21	1.23	0.88	0.85	3.21	147856	18472	16	0	20	0	0	logfile
✔	8CPS	16784	2023-07-16	2023-03-03	1.82	1.69	1.90	1.7	0.003	0.66	0.0	0.05	15.42	0.01	2.116	2.82	0.00	1.0	99.0	0.0	2.28	0.75	0.81	8.54	1.7	0.003	0.58	0.0	0.04	17.00	0.00	2.154	4.46	0.16	1.2	98.8	0.0	4.78	0.30	0.77	0.83	8.39	36034	4152	72	0	38	1916	0	logfile
✔	8D33	27154	2023-07-07	2022-05-31	2.46	2.01	2.48	1.7	0.003	0.55	0.0	0.04	13.00	0.00	2.091	4.01	0.39	3.5	96.5	0.1	0.90	0.73	0.78	3.10	1.6	0.004	0.66	0.0	0.04	18.13	0.00	2.158	7.95	3.49	3.9	96.0	0.1	0.37	1.33	0.73	0.79	3.25	15272	1784	6	46	2	0	0	logfile
✔	8CPW	16788	2023-07-16	2023-03-03	1.79	1.64	1.78	1.7	0.005	0.84	0.0	0.06	14.35	0.01	2.180	3.39	0.63	1.0	99.0	0.0	2.13	0.77	0.83	8.34	1.6	0.004	0.71	0.0	0.04	14.75	0.00	2.215	4.05	0.41	1.2	98.8	0.0	3.93	0.22	0.77	0.85	7.73	36004	4152	72	0	38	1886	0	logfile
✔	6W6P	21562	2023-07-12	2020-03-17	2.9	2.21	—	1.7	0.010	1.07	0.0	0.06	16.55	0.01	1.989	6.48	16.52	12.1	87.6	0.3	-4.00	0.77	0.84	2.96	1.6	0.004	0.72	0.0	0.04	16.11	0.01	1.971	5.86	8.23	8.7	91.2	0.1	-1.86	1.60	0.79	0.86	2.56	133554	5058	51	4378	4	0	0	logfile
✘	7P13	13154	2023-07-07	2021-07-01	2.29	1.96	2.28	1.7	0.016	1.06	0.0	0.07	14.07	0.01	2.430	5.24	0.00	3.3	96.7	0.0	2.06	0.82	0.87	4.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13727	1743	7	0	0	0	154	logfile

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