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Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 4V91 | 2599 | 2024-03-15 | 2014-03-21 | 3.7 | 3.84 | — | 3.8 | 0.133 | 4.77 | 525.0 | 0.43 | 25.54 | 0.07 | 0.695 | 17.94 | 12.79 | 14.1 | 78.2 | 7.8 | -5.39 | 0.33 | 0.36 | 0.15 | 3.8 | 0.042 | 1.66 | 0.0 | 0.05 | 23.19 | 0.02 | 1.926 | 18.85 | 3.11 | 9.9 | 89.3 | 0.8 | -2.99 | 2.00 | 0.63 | 0.82 | 1.46 | 125665 | 6450 | 45 | 3482 | 0 | 0 | 0 | logfile |
✔ | 3J79 | 2660 | 2024-03-14 | 2014-06-02 | 3.2 | 3.25 | 3.13 | 3.2 | 0.007 | 1.31 | 43.0 | 0.10 | 24.55 | 0.01 | 1.505 | 4.40 | 11.66 | 7.2 | 90.4 | 2.4 | -1.45 | 0.53 | 0.71 | 0.94 | 3.2 | 0.006 | 0.72 | 0.0 | 0.04 | 23.18 | 0.01 | 1.817 | 13.55 | 6.22 | 6.2 | 93.3 | 0.5 | -0.49 | 0.94 | 0.65 | 0.86 | 1.83 | 124514 | 6244 | 55 | 3460 | 168 | 0 | 0 | logfile |
✔ | 3J7A | 2660 | 2024-03-15 | 2014-06-03 | 3.2 | 3.24 | 3.33 | 3.2 | 0.008 | 1.39 | 49.0 | 0.10 | 24.28 | 0.01 | 1.715 | 4.56 | 15.41 | 10.5 | 85.4 | 4.2 | -2.49 | 0.31 | 0.55 | -0.02 | 3.2 | 0.005 | 0.77 | 0.0 | 0.04 | 23.17 | 0.01 | 1.822 | 18.07 | 6.12 | 9.2 | 89.6 | 1.2 | -2.23 | 2.69 | 0.40 | 0.78 | 0.95 | 68866 | 4106 | 35 | 1682 | 69 | 0 | 0 | logfile |
✔ | 4UQ8 | 2676 | 2024-03-20 | 2014-06-21 | 4.95 | 5.05 | 4.64 | 4.9 | 0.012 | 2.07 | 23.0 | 1.38 | 6.71 | 0.01 | 1.032 | 64.12 | 25.00 | 0.0 | 0.0 | 0.0 | — | 0.57 | 0.75 | — | 4.9 | 0.013 | 2.54 | 0.0 | 0.41 | 5.47 | 0.00 | 2.131 | 22.79 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.11 | 0.61 | 0.83 | — | 28647 | 33 | 54 | 0 | 5686 | 0 | 0 | logfile |
✔ | 3J7H | 5995 | 2024-03-22 | 2014-06-30 | 3.2 | 2.58 | 3.45 | 3.4 | 0.005 | 1.17 | 0.0 | 0.06 | 17.98 | 0.01 | 1.085 | 132.80 | 12.24 | 2.5 | 97.4 | 0.2 | 2.39 | 0.77 | 0.79 | 2.04 | 3.4 | 0.005 | 0.76 | 0.0 | 0.04 | 17.51 | 0.00 | 2.008 | 14.58 | 5.58 | 3.8 | 96.2 | 0.0 | -0.11 | 1.64 | 0.79 | 0.87 | 2.57 | 32828 | 4088 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 3J7Y | 2762 | 2024-03-19 | 2014-08-26 | 3.4 | 3.45 | — | 3.4 | 0.008 | 1.34 | 31.0 | 0.10 | 23.07 | 0.01 | 1.708 | 8.61 | 8.93 | 7.9 | 89.9 | 2.2 | -1.78 | 0.72 | 0.83 | 2.09 | 3.4 | 0.004 | 0.75 | 1.0 | 0.04 | 22.01 | 0.01 | 1.816 | 11.97 | 4.58 | 6.7 | 92.6 | 0.7 | -0.26 | 2.04 | 0.74 | 0.85 | 1.95 | 94121 | 7469 | 56 | 1530 | 208 | 0 | 0 | logfile |
✔ | 3J7Z | 6057 | 2024-03-19 | 2014-08-27 | 3.9 | 3.80 | — | 3.9 | 0.009 | 1.42 | 5.0 | 0.10 | 23.57 | 0.01 | 1.426 | 11.65 | 10.91 | 16.3 | 77.2 | 6.5 | -5.00 | 0.75 | 0.70 | 0.71 | 3.8 | 0.005 | 0.77 | 1.0 | 0.04 | 23.13 | 0.01 | 1.856 | 14.47 | 6.24 | 12.3 | 85.8 | 1.9 | -2.83 | 1.84 | 0.78 | 0.79 | 0.91 | 90700 | 3453 | 36 | 2975 | 1 | 0 | 0 | logfile |
✔ | 3J80 | 2764 | 2024-03-17 | 2014-08-28 | 3.75 | 3.87 | 3.84 | 3.8 | 0.007 | 1.36 | 43.0 | 0.11 | 26.05 | 0.01 | 1.747 | 9.35 | 13.53 | 12.2 | 83.2 | 4.6 | -2.33 | 0.79 | 0.86 | 0.90 | 3.7 | 0.004 | 0.77 | 0.0 | 0.04 | 24.75 | 0.01 | 1.793 | 20.61 | 7.27 | 11.4 | 87.2 | 1.4 | -1.71 | 1.59 | 0.78 | 0.82 | 0.65 | 77716 | 5039 | 41 | 1779 | 70 | 0 | 0 | logfile |
✔ | 3J81 | 2763 | 2024-03-18 | 2014-08-29 | 4.0 | 4.19 | — | 4.0 | 0.007 | 1.30 | 64.0 | 0.10 | 25.85 | 0.01 | 1.076 | 7.72 | 12.47 | 11.6 | 83.5 | 4.9 | -2.31 | 0.79 | 0.84 | — | 4.0 | 0.005 | 0.85 | 3.0 | 0.04 | 25.03 | 0.01 | 1.864 | 24.43 | 5.64 | 10.9 | 87.5 | 1.5 | -1.84 | 2.06 | 0.79 | 0.82 | — | 83760 | 5686 | 48 | 1876 | 84 | 0 | 0 | logfile |
✔ | 4UY8 | 2773 | 2024-03-19 | 2014-08-29 | 3.8 | 4.07 | — | 4.1 | 0.010 | 1.50 | 8.0 | 0.07 | 23.51 | 0.01 | 0.879 | 12.34 | 11.16 | 16.3 | 76.9 | 6.8 | -5.04 | 0.53 | 0.64 | 0.36 | 4.0 | 0.002 | 0.57 | 0.0 | 0.03 | 23.85 | 0.00 | 1.744 | 53.30 | 5.24 | 12.4 | 85.4 | 2.1 | -3.11 | 1.58 | 0.58 | 0.79 | 1.19 | 92995 | 3468 | 47 | 3049 | 144 | 439 | 8 | logfile |
✔ | 4V19 | 2787 | 2024-03-15 | 2014-09-25 | 3.4 | 3.44 | — | 3.4 | 0.009 | 1.32 | 0.0 | 0.05 | 23.56 | 0.01 | 1.860 | 9.75 | 6.97 | 3.8 | 96.1 | 0.1 | -2.85 | 0.76 | 0.88 | 2.04 | 3.4 | 0.004 | 0.72 | 1.0 | 0.04 | 22.66 | 0.01 | 1.093 | 9.21 | 4.48 | 3.8 | 96.1 | 0.1 | -0.27 | 1.50 | 0.76 | 0.88 | 2.14 | 69409 | 4361 | 42 | 1583 | 171 | 204 | 0 | logfile |
✔ | 4V1A | 2787 | 2024-03-22 | 2014-09-25 | 3.4 | 3.43 | — | 3.4 | 0.009 | 1.29 | 0.0 | 0.05 | 13.81 | 0.01 | 2.067 | 12.17 | 6.03 | 4.6 | 95.3 | 0.1 | -2.62 | 0.37 | 0.78 | 1.69 | 3.4 | 0.003 | 0.69 | 0.0 | 0.04 | 16.98 | 0.00 | 2.070 | 10.97 | 3.71 | 4.0 | 95.9 | 0.1 | 0.59 | 1.85 | 0.38 | 0.80 | 1.65 | 31917 | 3843 | 24 | 0 | 94 | 0 | 0 | logfile |
✔ | 4V1W | 2788 | 2024-03-22 | 2014-10-02 | 4.7 | 4.69 | — | 4.7 | 0.020 | 2.45 | 172.0 | 0.17 | 18.97 | 0.01 | 2.533 | 7.94 | 7.67 | 3.0 | 96.5 | 0.6 | -2.40 | 0.74 | 0.84 | — | 4.6 | 0.003 | 0.80 | 0.0 | 0.04 | 17.57 | 0.00 | 2.213 | 17.43 | 0.69 | 3.0 | 97.0 | 0.0 | 1.92 | 2.68 | 0.75 | 0.79 | — | 32736 | 4080 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J89 | 6123 | 2024-03-14 | 2014-10-07 | 3.6 | 2.21 | — | 3.5 | 0.022 | 1.64 | 0.0 | 0.10 | 11.97 | 0.01 | 2.578 | 2.11 | 0.00 | 3.5 | 96.5 | 0.0 | -0.96 | 0.83 | 0.81 | 0.77 | 3.2 | 0.003 | 0.49 | 0.0 | 0.03 | 20.46 | 0.00 | 2.181 | 8.86 | 5.51 | 0.4 | 99.6 | 0.0 | 3.23 | 1.98 | 0.81 | 0.79 | 0.27 | 9025 | 551 | 19 | 0 | 0 | 0 | 4598 | logfile |
✔ | 3J8A | 6124 | 2024-03-16 | 2014-10-08 | 3.7 | 3.90 | — | 3.8 | 0.006 | 1.27 | 0.0 | 0.05 | 14.88 | 0.01 | 2.145 | 19.64 | 6.28 | 11.2 | 87.4 | 1.4 | -5.31 | 0.73 | 0.80 | 2.48 | 3.8 | 0.003 | 0.79 | 0.0 | 0.04 | 16.73 | 0.00 | 1.941 | 15.12 | 6.99 | 6.0 | 93.1 | 0.8 | -2.20 | 0.49 | 0.72 | 0.83 | 1.54 | 15800 | 1835 | 12 | 0 | 280 | 0 | 0 | logfile |
✘ | 3J8H | 2807 | 2024-03-11 | 2014-10-26 | 3.8 | 3.95 | — | 3.8 | 0.006 | 1.31 | 4.0 | 0.05 | 10.89 | 0.01 | 1.488 | 33.49 | 2.47 | 5.3 | 92.8 | 1.9 | -2.06 | 0.65 | 0.64 | 1.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111160 | 12796 | 12 | 0 | 2276 | 0 | 0 | logfile |
✔ | 3J8i | 6179 | 2024-03-16 | 2014-11-06 | 4.7 | 4.79 | — | 4.7 | 0.018 | 1.67 | 0.0 | 0.11 | 19.47 | 0.01 | 2.125 | 76.17 | 14.53 | 6.4 | 87.5 | 6.1 | -1.59 | 0.66 | 0.76 | — | 4.7 | 0.003 | 0.88 | 0.0 | 0.04 | 14.41 | 0.00 | 2.094 | 16.30 | 0.00 | 9.4 | 89.8 | 0.8 | -1.91 | 1.28 | 0.64 | 0.71 | — | 14800 | 1875 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 3J92 | 2832 | 2024-03-23 | 2014-12-02 | 3.6 | 3.74 | — | 3.7 | 0.010 | 1.59 | 52.0 | 0.11 | 26.72 | 0.01 | 1.186 | 15.75 | 18.87 | 11.1 | 85.7 | 3.2 | -3.22 | 0.79 | 0.74 | 0.42 | 3.7 | 0.007 | 0.88 | 0.0 | 0.05 | 24.87 | 0.01 | 1.037 | 16.76 | 5.78 | 9.0 | 90.5 | 0.5 | -1.78 | 1.10 | 0.86 | 0.86 | 1.69 | 146386 | 7246 | 65 | 4013 | 593 | 0 | 0 | logfile |
✔ | 3J94 | 6204 | 2024-03-18 | 2014-12-05 | 4.2 | 2.69 | — | 3.1 | 0.009 | 1.97 | 0.0 | 0.07 | 17.14 | 0.01 | 1.261 | 31.36 | 5.87 | 5.0 | 93.0 | 2.0 | 2.31 | 0.83 | 0.77 | — | 2.7 | 0.003 | 0.77 | 0.0 | 0.04 | 14.74 | 0.00 | 1.688 | 15.69 | 0.05 | 4.6 | 94.9 | 0.5 | 0.58 | 2.62 | 0.85 | 0.80 | — | 21509 | 2895 | 12 | 0 | 11 | 0 | 0 | logfile |
✔ | 3J9C | 6224 | 2024-03-19 | 2014-12-25 | 2.9 | 3.02 | — | 3.1 | 0.005 | 1.11 | 0.0 | 0.05 | 14.41 | 0.00 | 2.277 | 7.02 | 6.13 | 4.8 | 95.2 | 0.0 | -0.81 | 0.74 | 0.87 | 2.67 | 3.0 | 0.003 | 0.58 | 0.0 | 0.04 | 16.42 | 0.00 | 2.176 | 7.93 | 3.35 | 2.2 | 97.8 | 0.0 | 0.04 | 1.43 | 0.76 | 0.86 | 3.13 | 23296 | 2961 | 7 | 0 | 14 | 0 | 0 | logfile |