Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5A6F	3063	2023-09-29	2015-06-25	4.2	5.75	—	5.0	0.012	1.50	0.0	0.05	12.32	0.01	2.112	10.08	3.74	12.2	87.6	0.2	-4.94	0.56	0.74	—	4.9	0.002	0.56	0.0	0.04	10.89	0.00	2.048	8.96	0.00	4.7	95.3	0.0	-0.78	0.97	0.57	0.75	—	8881	540	2	0	43	0	4330	logfile
✘	5A7U	3079	2023-09-27	2015-07-10	4.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	1	0	1	0	231	logfile
✔	3JBS	6478	2023-09-27	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.003	0.61	0.0	0.04	18.11	0.00	2.225	5.17	3.95	1.7	98.3	0.0	0.99	1.75	0.21	0.81	3.63	1401	175	1	0	0	0	0	logfile
✔	5FN4	3239	2023-09-29	2015-11-10	4.0	4.24	—	4.2	0.010	1.71	17.0	0.10	18.07	0.01	2.131	10.17	10.51	12.0	84.8	3.2	-1.44	0.61	0.55	—	4.1	0.004	0.89	0.0	0.05	17.23	0.01	2.157	20.48	0.57	7.4	91.9	0.6	-0.37	1.73	0.69	0.79	—	9776	1250	5	0	0	0	0	logfile
✔	5FN1	3236	2023-09-30	2015-11-10	3.9	4.00	—	4.7	0.009	1.18	0.0	0.07	11.47	0.00	0.877	53.81	0.00	8.8	88.4	2.8	-3.37	0.24	0.29	0.57	3.9	0.005	0.87	0.0	0.04	16.79	0.01	1.856	24.11	1.08	13.3	85.7	1.0	-1.33	2.15	0.41	0.75	0.99	61308	3906	36	90	0	0	30078	logfile
✔	5FN2	3237	2023-09-30	2015-11-10	4.2	4.23	—	4.2	0.009	1.73	23.0	0.10	17.98	0.01	1.890	19.04	11.69	11.9	84.1	3.9	-1.77	0.48	0.55	—	4.2	0.005	0.92	0.0	0.05	14.42	0.01	2.145	22.58	0.00	9.5	89.6	0.8	-1.02	1.11	0.59	0.73	—	10276	1309	4	0	0	0	0	logfile
✔	5FN3	3238	2023-09-30	2015-11-10	4.1	4.53	—	4.1	0.011	1.81	26.0	0.10	18.64	0.01	1.021	20.42	11.34	10.7	85.3	4.0	-1.54	0.66	0.60	—	4.1	0.004	0.83	0.0	0.04	13.92	0.01	2.063	18.67	0.00	8.4	90.6	1.0	-0.49	2.22	0.71	0.79	—	10291	1318	5	0	0	0	0	logfile
✔	5FN5	3240	2023-09-29	2015-11-10	4.3	4.62	—	4.3	0.012	1.85	28.0	0.11	18.82	0.01	2.074	13.59	14.00	11.4	84.3	4.3	-1.91	0.65	0.62	—	4.3	0.003	0.86	0.0	0.04	13.72	0.01	2.178	20.91	0.10	8.6	90.7	0.7	-0.88	1.04	0.69	0.79	—	9645	1227	4	0	0	0	0	logfile
✔	5FNA	3241	2023-09-28	2015-11-11	4.8	4.43	—	4.2	0.013	1.51	0.0	0.08	12.32	0.01	2.219	36.54	0.00	6.0	94.0	0.0	-1.83	0.48	0.71	—	4.2	0.004	0.85	0.0	0.04	14.28	0.01	2.153	22.99	0.00	8.4	90.4	1.2	-0.31	2.61	0.49	0.75	—	5328	680	8	0	0	0	0	logfile
✔	3JC2	3245	2023-09-27	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	18.51	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.004	0.86	0.0	0.04	17.18	0.00	2.128	14.33	0.49	7.4	91.9	0.6	-1.41	3.32	0.24	0.53	1.66	3911	482	4	0	32	0	0	logfile
✔	3JCA	6441	2023-09-30	2015-11-24	4.8	4.59	—	4.5	0.012	1.49	0.0	0.07	18.62	0.01	2.370	2.63	0.00	7.2	92.8	0.0	-1.87	0.75	0.75	—	4.5	0.003	0.67	0.0	0.04	19.63	0.00	2.003	16.02	0.19	4.7	95.3	0.0	-0.12	2.47	0.76	0.76	—	11466	1226	16	80	4	0	0	logfile
✔	5G05	3388	2023-09-30	2016-03-16	3.4	3.84	—	3.5	0.016	1.81	55.0	0.10	18.98	0.01	0.612	56.69	17.76	4.5	93.6	1.8	-0.14	0.85	0.76	1.42	3.5	0.003	0.84	0.0	0.04	17.34	0.00	2.093	16.82	0.41	4.9	94.6	0.5	0.75	3.20	0.89	0.84	1.25	63181	8027	21	0	3	0	0	logfile
✔	3JD8	6640	2023-09-30	2016-05-01	4.43	4.58	—	4.4	0.015	1.56	5.0	0.13	16.87	0.02	1.335	78.13	11.82	11.9	79.7	8.4	-3.27	0.54	0.62	—	4.4	0.005	0.96	0.0	0.05	12.46	0.00	2.015	23.00	0.00	9.8	89.4	0.8	-1.20	1.21	0.57	0.73	—	8050	1133	7	0	25	0	0	logfile
✔	5K0Z	8191	2023-09-29	2016-05-17	2.8	4.15	—	2.8	0.011	1.04	0.0	0.06	10.64	0.01	2.056	18.30	0.00	2.9	97.1	0.0	-4.11	0.73	0.58	1.27	3.1	0.005	1.15	0.0	0.06	17.03	0.01	2.099	33.56	4.91	4.5	95.5	0.0	-0.35	1.52	0.87	0.84	1.07	9749	1268	8	0	0	41	0	logfile
✘	5KMG	8266	2023-09-29	2016-06-27	3.5	4.13	—	4.0	0.019	1.34	0.0	0.10	12.53	0.02	1.894	3.71	0.00	5.8	92.0	2.2	-1.01	0.49	0.75	2.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	111594	13860	70	14	42	0	0	logfile
✘	5GKZ	9519	2023-09-29	2016-07-07	4.0	4.10	—	4.0	0.019	1.71	36.0	0.11	11.29	0.01	1.755	15.04	0.51	6.5	91.2	2.3	-2.89	0.72	0.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	111000	15068	12	0	4	0	0	logfile
✘	5GKY	9518	2023-09-29	2016-07-07	3.8	4.18	—	4.0	0.017	1.70	19.0	0.10	11.29	0.01	1.789	19.04	0.51	5.8	91.8	2.5	-2.71	0.73	0.79	1.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	111036	15068	12	0	4	0	0	logfile
✘	5GL0	9520	2023-09-29	2016-07-07	4.2	4.40	—	4.2	0.018	1.72	17.0	0.10	11.34	0.01	1.957	21.25	0.51	6.5	90.6	2.9	-2.58	0.74	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	111000	15068	12	0	4	0	0	logfile
✘	5GM6	9524	2023-09-29	2016-07-12	3.5	3.61	—	3.6	0.012	1.33	11.0	0.08	13.79	0.01	1.303	18.95	3.36	6.6	92.1	1.2	-3.54	0.58	0.83	2.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	112064	12796	55	361	881	0	0	logfile
✔	5LiJ	4054	2023-09-27	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.64	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.005	1.18	0.0	0.04	10.31	0.00	2.148	15.12	0.00	32.0	68.0	0.0	-5.66	1.48	0.86	0.78	—	761	152	1	0	0	0	0	logfile

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