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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8PVL | 17970 | 2024-03-01 | 2023-07-17 | 2.19 | 2.40 | — | 2.2 | 0.005 | 0.81 | 0.0 | 0.04 | 21.84 | 0.01 | 2.092 | 2.93 | 1.09 | 1.5 | 98.5 | 0.0 | 0.66 | 0.90 | 0.90 | 4.54 | 2.2 | 0.005 | 0.72 | 0.0 | 0.04 | 21.70 | 0.01 | 1.867 | 4.57 | 1.67 | 1.5 | 98.5 | 0.0 | 1.52 | 0.19 | 0.91 | 0.91 | 4.44 | 152760 | 10162 | 67 | 3356 | 10 | 3 | 0 | logfile |
✔ | 5iMQ | 6584 | 2024-03-01 | 2016-03-06 | 3.8 | 3.95 | — | 3.9 | 0.012 | 1.41 | 0.0 | 0.07 | 26.36 | 0.01 | 1.006 | 63.05 | 4.55 | 16.6 | 72.8 | 10.6 | -4.61 | 0.71 | 0.65 | 0.92 | 3.9 | 0.006 | 0.92 | 2.0 | 0.05 | 25.31 | 0.01 | 1.725 | 25.39 | 7.38 | 18.5 | 79.1 | 2.4 | -3.66 | 0.78 | 0.82 | 0.80 | 0.46 | 153046 | 6640 | 56 | 4680 | 1 | 0 | 0 | logfile |
✔ | 7MSC | 23961 | 2024-03-01 | 2021-05-11 | 2.97 | 2.46 | — | 2.9 | 0.009 | 0.88 | 0.0 | 0.05 | 22.15 | 0.01 | 2.009 | 2.25 | 0.12 | 6.9 | 92.9 | 0.2 | -4.68 | 0.85 | 0.87 | 4.04 | 2.9 | 0.009 | 0.75 | 0.0 | 0.04 | 22.31 | 0.01 | 1.767 | 5.50 | 3.63 | 6.7 | 93.1 | 0.2 | -1.54 | 0.40 | 0.85 | 0.88 | 2.99 | 152447 | 6179 | 69 | 4836 | 453 | 0 | 0 | logfile |
✔ | 8PHJ | 17667 | 2024-03-01 | 2023-06-20 | 3.67 | 3.12 | — | 3.1 | 0.007 | 0.56 | 0.0 | 0.03 | 21.88 | 0.02 | 1.602 | 3.56 | 2.16 | 3.4 | 96.6 | 0.0 | -0.44 | 0.76 | 0.81 | 3.82 | 3.1 | 0.008 | 0.74 | 0.0 | 0.04 | 22.11 | 0.01 | 1.781 | 5.32 | 3.81 | 4.0 | 96.0 | 0.0 | 0.33 | 0.39 | 0.76 | 0.80 | 3.17 | 152518 | 6749 | 68 | 4644 | 244 | 0 | 0 | logfile |
✔ | 6WD3 | 21622 | 2024-03-01 | 2020-03-31 | 3.6 | 3.96 | 3.97 | 3.8 | 0.006 | 0.95 | 0.0 | 0.08 | 22.07 | 0.01 | 1.315 | 11.55 | 0.96 | 12.0 | 86.3 | 1.8 | -4.89 | 0.83 | 0.83 | 1.34 | 3.8 | 0.006 | 0.79 | 0.0 | 0.04 | 23.42 | 0.01 | 1.999 | 26.14 | 7.31 | 11.4 | 88.5 | 0.2 | -2.55 | 1.49 | 0.84 | 0.84 | 0.96 | 153211 | 6408 | 62 | 4811 | 0 | 0 | 0 | logfile |
✔ | 6WD6 | 21625 | 2024-03-01 | 2020-03-31 | 3.7 | 4.07 | 4.15 | 3.9 | 0.006 | 0.94 | 0.0 | 0.08 | 22.03 | 0.01 | 1.316 | 11.51 | 0.71 | 11.1 | 87.3 | 1.6 | -4.98 | 0.83 | 0.82 | 0.92 | 3.9 | 0.005 | 0.74 | 0.0 | 0.04 | 23.46 | 0.01 | 2.049 | 24.55 | 6.10 | 10.4 | 89.4 | 0.2 | -2.60 | 1.49 | 0.84 | 0.83 | 0.78 | 153103 | 6396 | 62 | 4811 | 0 | 0 | 0 | logfile |
✔ | 5LZD | 4124 | 2024-03-01 | 2016-09-29 | 3.4 | 3.48 | 3.51 | 3.4 | 0.009 | 1.23 | 9.0 | 0.08 | 22.46 | 0.02 | 2.023 | 6.14 | 0.71 | 7.6 | 91.0 | 1.4 | -3.90 | 0.75 | 0.86 | 2.27 | 3.4 | 0.004 | 0.75 | 1.0 | 0.04 | 22.60 | 0.01 | 1.778 | 13.88 | 8.03 | 8.0 | 91.7 | 0.3 | -1.77 | 0.51 | 0.75 | 0.86 | 1.67 | 153177 | 6439 | 68 | 4785 | 152 | 2 | 0 | logfile |
✔ | 6WH7 | 21668 | 2024-03-01 | 2020-04-07 | 2.78 | 2.79 | — | 2.9 | 0.011 | 0.89 | 0.0 | 0.07 | 9.91 | 0.01 | 1.989 | 20.54 | 0.71 | 3.5 | 96.2 | 0.3 | -1.50 | 0.74 | 0.88 | 5.74 | 2.9 | 0.005 | 0.71 | 0.0 | 0.05 | 15.53 | 0.00 | 2.074 | 13.56 | 3.66 | 6.5 | 93.4 | 0.1 | -1.14 | 0.57 | 0.72 | 0.88 | 4.19 | 151800 | 19020 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 5U9F | 8521 | 2024-03-01 | 2016-12-16 | 3.2 | 4.48 | — | 3.3 | 0.006 | 0.95 | 0.0 | 0.08 | 22.02 | 0.01 | 2.301 | 12.61 | 1.02 | 10.8 | 88.2 | 1.0 | -5.04 | 0.87 | 0.78 | 1.55 | 3.4 | 0.006 | 0.75 | 1.0 | 0.04 | 23.26 | 0.01 | 1.802 | 25.76 | 4.19 | 11.0 | 88.9 | 0.1 | -2.22 | 1.46 | 0.94 | 0.90 | 1.09 | 152819 | 6576 | 72 | 4729 | 361 | 0 | 0 | logfile |
✔ | 7Z4F | 14495 | 2024-03-02 | 2022-03-03 | 4.2 | 4.06 | 5.31 | 3.9 | 0.006 | 0.83 | 24.0 | 0.05 | 14.46 | 0.01 | 0.140 | 45.30 | 0.97 | 8.4 | 90.6 | 0.9 | -2.35 | 0.75 | 0.63 | — | 3.9 | 0.014 | 0.90 | 2.0 | 0.05 | 14.35 | 0.01 | 2.023 | 30.18 | 0.00 | 13.1 | 86.3 | 0.6 | -2.61 | 1.00 | 0.77 | 0.72 | — | 154392 | 21600 | 66 | 0 | 0 | 0 | 0 | logfile |
✔ | 5WFK | 8828 | 2024-03-02 | 2017-07-12 | 3.4 | 3.64 | 3.59 | 3.6 | 0.008 | 1.11 | 3.0 | 0.10 | 24.20 | 0.02 | 1.013 | 3.73 | 3.19 | 9.7 | 88.0 | 2.3 | -4.14 | 0.77 | 0.78 | 1.88 | 3.6 | 0.008 | 0.91 | 0.0 | 0.04 | 23.93 | 0.01 | 1.583 | 16.50 | 7.30 | 11.3 | 88.1 | 0.6 | -2.31 | 1.66 | 0.82 | 0.83 | 1.72 | 154325 | 6324 | 113 | 4802 | 1415 | 419 | 0 | logfile |
✔ | 6Q95 | 4475 | 2024-03-02 | 2018-12-17 | 3.7 | 3.72 | — | 3.7 | 0.012 | 1.38 | 0.0 | 0.06 | 25.82 | 0.01 | 1.247 | 8.93 | 1.13 | 16.6 | 82.6 | 0.8 | -5.45 | 0.81 | 0.82 | 1.61 | 3.7 | 0.004 | 0.85 | 0.0 | 0.04 | 25.48 | 0.01 | 1.076 | 18.76 | 4.93 | 13.9 | 85.6 | 0.4 | -3.23 | 1.95 | 0.79 | 0.80 | 1.17 | 154751 | 5924 | 84 | 4932 | 910 | 0 | 0 | logfile |
✔ | 7M5D | 23673 | 2024-03-02 | 2021-03-23 | 2.8 | 2.87 | — | 2.9 | 0.007 | 1.27 | 14.0 | 0.07 | 22.74 | 0.02 | 2.254 | 3.03 | 0.02 | 2.2 | 97.7 | 0.1 | -0.65 | 0.73 | 0.80 | 2.44 | 2.9 | 0.007 | 0.75 | 0.0 | 0.04 | 23.15 | 0.01 | 1.960 | 9.34 | 3.91 | 4.5 | 95.5 | 0.0 | -0.57 | 0.56 | 0.78 | 0.87 | 3.01 | 153460 | 6867 | 60 | 4648 | 1 | 0 | 0 | logfile |
✔ | 5WE4 | 8814 | 2024-03-02 | 2017-07-07 | 3.1 | 3.04 | 3.02 | 3.0 | 0.008 | 1.14 | 3.0 | 0.10 | 24.21 | 0.02 | 1.575 | 3.75 | 3.52 | 9.8 | 87.9 | 2.3 | -4.03 | 0.78 | 0.81 | 2.62 | 3.0 | 0.005 | 0.78 | 0.0 | 0.04 | 23.77 | 0.01 | 1.021 | 11.61 | 5.67 | 8.3 | 91.2 | 0.5 | -1.85 | 3.97 | 0.84 | 0.83 | 2.36 | 155067 | 6324 | 117 | 4802 | 1620 | 996 | 0 | logfile |
✔ | 5oT7 | 3852 | 2024-03-02 | 2017-08-21 | 3.8 | 3.85 | 3.80 | 3.8 | 0.003 | 0.84 | 0.0 | 0.04 | 23.30 | 0.01 | 1.298 | 6.70 | 0.49 | 12.5 | 87.2 | 0.3 | -5.45 | 0.77 | 0.70 | 1.03 | 3.8 | 0.007 | 0.83 | 0.0 | 0.04 | 23.82 | 0.01 | 1.069 | 21.99 | 5.35 | 14.9 | 84.9 | 0.3 | -3.61 | 1.32 | 0.84 | 0.81 | 0.87 | 154665 | 6718 | 75 | 4614 | 805 | 0 | 0 | logfile |
✔ | 5iQR | 8107 | 2024-03-02 | 2016-03-11 | 3.0 | 3.10 | 3.03 | 3.1 | 0.008 | 1.25 | 41.0 | 0.10 | 24.24 | 0.02 | 0.899 | 7.48 | 6.07 | 7.5 | 91.0 | 1.5 | -2.52 | 0.76 | 0.81 | 1.93 | 3.0 | 0.003 | 0.68 | 0.0 | 0.03 | 23.77 | 0.01 | 1.070 | 14.69 | 4.52 | 5.3 | 94.4 | 0.2 | -0.61 | 2.06 | 0.81 | 0.86 | 1.86 | 154519 | 6570 | 74 | 4794 | 303 | 2 | 0 | logfile |
✔ | 5WFS | 8829 | 2024-03-02 | 2017-07-12 | 3.0 | 3.09 | 3.13 | 3.0 | 0.008 | 1.16 | 2.0 | 0.10 | 24.59 | 0.02 | 1.324 | 4.18 | 3.10 | 9.3 | 88.2 | 2.4 | -4.11 | 0.73 | 0.77 | 2.42 | 3.0 | 0.006 | 0.84 | 1.0 | 0.04 | 24.01 | 0.01 | 1.031 | 12.54 | 4.92 | 8.9 | 90.5 | 0.6 | -1.93 | 1.52 | 0.84 | 0.85 | 2.39 | 155100 | 6324 | 114 | 4802 | 1479 | 1175 | 0 | logfile |
✔ | 5WF0 | 8826 | 2024-03-02 | 2017-07-11 | 3.6 | 3.35 | 3.39 | 3.3 | 0.008 | 1.12 | 3.0 | 0.10 | 24.25 | 0.02 | 0.789 | 3.28 | 4.47 | 9.7 | 87.8 | 2.4 | -4.19 | 0.75 | 0.77 | 2.17 | 3.3 | 0.007 | 0.84 | 0.0 | 0.04 | 23.77 | 0.01 | 1.731 | 13.45 | 4.86 | 9.3 | 90.1 | 0.6 | -1.95 | 3.01 | 0.80 | 0.79 | 2.05 | 154600 | 6324 | 110 | 4802 | 1486 | 676 | 0 | logfile |
✔ | 5UYK | 8615 | 2024-03-02 | 2017-02-24 | 3.9 | 4.36 | 4.13 | 3.8 | 0.008 | 1.03 | 0.0 | 0.09 | 22.22 | 0.01 | 2.162 | 11.52 | 0.88 | 11.8 | 86.4 | 1.7 | -4.85 | 0.89 | 0.83 | 1.06 | 3.6 | 0.006 | 0.74 | 1.0 | 0.04 | 23.58 | 0.01 | 1.881 | 25.39 | 5.74 | 11.3 | 88.6 | 0.1 | -2.61 | 3.67 | 0.89 | 0.85 | 0.75 | 154412 | 6563 | 60 | 4812 | 1 | 0 | 0 | logfile |
✔ | 5UYL | 8616 | 2024-03-02 | 2017-02-24 | 3.6 | 4.27 | 7.95 | 3.6 | 0.010 | 1.06 | 0.0 | 0.09 | 22.37 | 0.01 | 1.339 | 12.65 | 1.12 | 12.2 | 85.6 | 2.2 | -4.96 | 0.89 | 0.82 | 1.34 | 3.6 | 0.005 | 0.77 | 3.0 | 0.04 | 23.61 | 0.01 | 1.708 | 26.51 | 5.83 | 11.8 | 88.0 | 0.1 | -2.59 | 1.98 | 0.90 | 0.86 | 1.11 | 153753 | 6476 | 63 | 4810 | 1 | 0 | 0 | logfile |