Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JLU	22380	2021-06-01	2020-07-30	3.8	3.27	—	3.8	0.003	0.78	0.0	0.05	16.63	0.00	2.187	11.55	0.21	9.3	90.7	0.0	-1.56	0.74	0.78	1.46	3.8	0.003	0.68	0.0	0.04	17.82	0.00	2.174	10.91	0.32	9.2	90.8	0.0	-1.52	0.40	0.74	0.79	1.76	8592	1079	2	0	1	0	0	logfile
✔	6TMi	10522	2021-06-01	2019-12-04	3.5	3.96	3.49	3.8	0.006	0.64	0.0	0.04	16.16	0.01	2.113	8.95	0.58	10.0	90.0	0.0	-4.41	0.53	0.77	1.38	3.8	0.004	0.69	0.0	0.03	17.34	0.01	2.043	10.31	0.39	6.6	93.4	0.0	0.67	1.61	0.53	0.80	1.44	9606	605	5	0	0	0	4842	logfile
✔	7KJX	22901	2021-06-01	2020-10-26	3.1	3.33	—	3.3	0.006	0.66	0.0	0.04	14.07	0.01	2.100	5.38	0.12	2.3	97.7	0.0	0.94	0.71	0.81	2.85	3.3	0.003	0.49	0.0	0.04	15.39	0.00	2.071	7.23	0.00	2.3	97.7	0.0	0.71	0.47	0.76	0.85	3.04	8589	948	5	44	2	0	0	logfile
✔	7KJV	22899	2021-06-01	2020-10-26	2.8	3.04	—	3.0	0.006	0.54	0.0	0.04	14.06	0.01	2.227	6.33	0.26	3.3	96.7	0.0	0.67	0.71	0.82	3.76	3.0	0.003	0.52	0.0	0.04	15.49	0.01	2.282	5.96	0.92	3.4	96.6	0.0	0.77	0.43	0.74	0.85	3.67	8361	941	5	44	2	0	0	logfile
✔	7JZU	22574	2021-06-01	2020-09-02	3.1	3.26	3.10	3.3	0.015	1.33	0.0	0.08	9.63	0.01	2.509	0.52	0.00	3.3	96.7	0.0	0.23	0.69	0.76	4.15	3.3	0.003	0.57	0.0	0.04	14.17	0.00	2.167	4.67	0.49	2.5	97.5	0.0	0.82	1.61	0.72	0.79	4.18	1987	248	3	0	3	0	0	logfile
✔	7JZM	22533	2021-06-01	2020-09-02	3.5	3.74	3.50	3.7	0.015	1.37	0.0	0.08	9.25	0.01	2.420	0.76	0.00	2.0	98.0	0.0	0.75	0.75	0.78	4.01	3.7	0.004	0.64	0.0	0.04	14.71	0.00	2.176	8.12	0.00	4.7	95.3	0.0	0.47	1.25	0.76	0.80	3.70	2033	258	3	0	3	0	0	logfile
✔	6ZLV	11275	2021-06-01	2020-07-01	3.5	3.60	—	3.5	0.011	1.86	4.0	0.12	12.22	0.01	2.221	18.63	2.72	3.7	95.7	0.6	-1.53	0.54	0.79	1.09	3.5	0.004	0.78	0.0	0.05	16.30	0.00	2.187	14.76	0.17	2.4	97.6	0.0	-0.26	1.11	0.55	0.78	1.74	5352	704	4	0	0	0	0	logfile
✔	7KJW	22900	2021-06-01	2020-10-26	2.9	3.11	—	3.1	0.006	0.54	0.0	0.04	13.99	0.00	2.198	4.70	0.87	2.6	97.3	0.1	0.64	0.76	0.83	4.14	3.1	0.003	0.50	0.0	0.04	15.97	0.00	2.267	6.87	1.49	2.2	97.8	0.0	0.68	0.95	0.78	0.86	4.16	8561	949	5	44	2	0	0	logfile
✔	7JiC	22344	2021-06-01	2020-07-23	3.8	4.28	3.86	4.1	0.002	0.45	0.0	0.04	9.26	0.00	2.241	5.57	0.00	4.4	95.6	0.0	-1.97	0.68	0.80	2.30	4.1	0.003	0.67	0.0	0.04	14.42	0.00	2.232	8.31	0.52	3.1	96.9	0.0	0.45	2.02	0.69	0.81	2.30	5980	842	4	0	0	0	0	logfile
✔	7AAP	11692	2021-06-01	2020-09-04	2.5	2.71	2.48	2.8	0.006	0.53	0.0	0.04	12.42	0.00	2.097	3.69	0.20	1.5	98.5	0.0	0.59	0.79	0.87	4.74	2.7	0.003	0.56	0.0	0.04	14.79	0.00	2.164	5.75	1.11	2.1	97.9	0.0	0.43	0.84	0.81	0.90	4.43	9446	1120	9	21	7	0	0	logfile
✔	7BH9	12187	2021-06-01	2021-01-11	2.9	3.58	2.91	3.4	0.007	0.76	0.0	0.05	13.23	0.00	2.021	5.17	0.33	4.9	95.1	0.0	-3.10	0.85	0.88	3.70	3.5	0.002	0.52	0.0	0.04	15.07	0.00	2.185	4.03	0.66	1.4	98.6	0.0	0.85	0.69	0.82	0.85	2.47	5876	730	3	0	4	0	0	logfile
✔	7JiL	22345	2021-06-01	2020-07-23	2.8	3.31	—	3.2	0.002	0.48	0.0	0.03	14.70	0.00	1.987	6.74	2.15	9.9	90.0	0.1	-3.96	0.82	0.84	2.44	3.2	0.006	0.67	0.0	0.04	15.90	0.01	1.843	6.49	5.46	12.3	87.6	0.1	-2.39	0.42	0.83	0.87	2.77	133098	5314	64	4327	325	36	0	logfile
✔	7C98	30308	2021-06-01	2020-06-05	3.47	3.58	—	3.6	0.007	0.91	0.0	0.05	17.05	0.01	1.906	9.01	0.00	7.4	92.6	0.0	-4.56	0.50	0.82	2.43	3.5	0.002	0.64	0.0	0.04	18.70	0.00	2.150	9.41	0.40	5.7	94.3	0.0	-1.11	1.11	0.50	0.83	1.92	7656	927	8	18	6	0	0	logfile
✔	7CGY	30366	2021-06-01	2020-07-03	3.2	2.64	—	3.2	0.006	1.02	0.0	0.06	15.66	0.00	1.554	8.56	0.27	4.9	94.9	0.2	-4.82	0.46	0.82	2.95	3.2	0.006	0.76	0.0	0.05	17.88	0.00	2.069	7.38	0.40	6.2	93.8	0.0	-2.35	3.59	0.47	0.84	2.61	7212	915	6	0	6	0	0	logfile
✔	6WM3	21848	2021-06-01	2020-04-20	3.4	3.61	—	3.5	0.007	0.71	0.0	0.04	16.93	0.00	2.026	11.14	8.84	7.8	92.2	0.0	-2.80	0.76	0.82	2.00	3.5	0.008	0.79	0.0	0.05	17.07	0.01	2.009	11.70	0.69	6.8	93.2	0.0	-0.32	0.55	0.78	0.85	1.80	69755	9210	39	0	9	0	0	logfile
✔	7C9C	30311	2021-06-01	2020-06-05	3.33	3.44	—	3.4	0.007	0.88	0.0	0.05	17.06	0.00	1.232	5.18	0.79	5.4	94.6	0.0	-5.45	0.54	0.87	4.39	3.4	0.003	0.55	0.0	0.04	17.54	0.00	2.191	5.24	0.53	4.4	95.6	0.0	-1.64	0.62	0.53	0.89	3.26	7452	924	7	9	6	0	0	logfile
✔	7CN0	30412	2021-06-01	2020-07-29	3.9	3.96	—	3.9	0.004	0.62	0.0	0.04	13.32	0.00	1.843	14.90	0.00	8.1	91.9	0.0	-2.90	0.55	0.77	2.36	3.9	0.002	0.60	0.0	0.04	15.75	0.00	2.277	10.19	0.46	5.7	94.3	0.0	0.82	0.55	0.55	0.77	0.50	6602	884	5	0	2	0	0	logfile
✔	7K0L	22601	2021-06-01	2020-09-04	3.4	3.83	—	3.7	0.004	0.69	0.0	0.17	12.59	0.00	2.141	4.28	0.00	1.9	98.1	0.0	1.09	0.74	0.87	3.05	3.7	0.003	0.68	0.0	0.07	13.89	0.00	2.199	4.67	0.25	2.4	97.6	0.0	0.79	1.05	0.75	0.88	2.82	7619	964	4	0	2	0	0	logfile
✔	6XMT	22263	2021-06-01	2020-06-30	3.3	3.96	3.42	3.7	0.003	0.58	0.0	0.04	12.44	0.00	1.814	7.24	0.00	4.5	95.5	0.0	-2.38	0.72	0.82	2.61	3.8	0.002	0.52	0.0	0.04	14.42	0.00	1.885	5.25	0.11	3.5	96.5	0.0	0.72	0.45	0.72	0.85	2.00	8324	1092	1	0	2	0	0	logfile
✔	6XMU	22264	2021-06-01	2020-06-30	3.3	3.92	3.36	3.6	0.003	0.56	0.0	0.04	11.80	0.00	1.956	6.41	0.00	4.3	95.7	0.0	-2.43	0.72	0.83	2.22	3.7	0.003	0.58	0.0	0.04	13.49	0.00	1.921	5.75	0.34	4.3	95.7	0.0	0.34	0.42	0.73	0.86	1.71	8411	1090	3	0	22	0	0	logfile

• ← previous
• Page 2 of 253
• next →