Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6QJH	4563	2022-12-11	2019-01-24	3.3	3.70	2.77	3.6	0.012	1.21	3.0	0.10	14.39	0.01	2.673	1.49	1.96	7.0	93.0	0.0	-3.22	0.36	0.83	2.97	3.6	0.003	0.61	0.0	0.05	15.77	0.00	2.278	5.61	0.00	2.3	97.7	0.0	-2.55	1.57	0.30	0.78	2.85	1302	177	3	0	0	0	0	logfile
✔	6N0G	9315	2022-12-11	2018-11-07	3.6	3.75	—	3.7	0.008	0.87	0.0	0.06	8.90	0.01	2.232	6.49	0.18	2.7	97.3	0.0	-3.39	0.81	0.85	3.75	3.7	0.004	0.69	0.0	0.04	15.03	0.00	2.090	14.56	0.40	2.3	97.7	0.0	0.08	2.43	0.81	0.86	2.81	55644	7545	57	0	0	0	0	logfile
✔	6QJP	4565	2022-12-11	2019-01-24	3.5	3.64	2.32	4.1	0.009	1.01	0.0	0.07	9.52	0.01	2.605	1.16	0.00	3.2	96.8	0.0	-2.50	0.37	0.74	3.05	4.2	0.003	0.70	0.0	0.05	12.40	0.00	2.347	10.42	0.00	1.1	98.9	0.0	-3.47	1.59	0.32	0.72	4.10	816	105	3	0	0	0	0	logfile
✔	6UES	20755	2022-12-11	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.87	0.0	0.04	21.10	0.01	1.792	36.17	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	6NT7	0504	2022-12-11	2019-01-28	4.0	4.27	—	4.1	0.008	0.91	0.0	0.05	14.13	0.01	2.238	5.64	0.00	6.2	93.8	0.0	-3.29	0.75	0.85	—	4.1	0.006	0.75	0.0	0.04	15.86	0.00	2.209	10.97	0.78	4.6	95.4	0.0	0.58	1.19	0.76	0.85	—	4729	588	3	0	1	0	0	logfile
✔	6XYP	10651	2022-12-11	2020-01-30	3.29	3.37	3.04	3.4	0.008	0.64	0.0	0.05	13.98	0.00	2.151	8.09	0.00	2.8	97.2	0.0	-5.04	0.47	0.84	4.49	3.4	0.006	0.62	0.0	0.05	15.80	0.00	2.188	4.94	0.20	2.4	97.6	0.0	-3.45	0.35	0.47	0.84	5.05	4955	725	10	0	0	0	0	logfile
✔	6XYQ	10652	2022-12-11	2020-01-30	3.09	3.30	2.79	3.3	0.007	0.71	0.0	0.05	12.97	0.00	2.130	9.08	0.00	3.5	96.5	0.0	-4.52	0.46	0.84	3.97	3.3	0.004	0.55	0.0	0.05	15.09	0.00	2.232	8.09	0.82	2.3	97.7	0.0	-3.28	0.44	0.47	0.85	4.77	4955	725	10	0	0	0	0	logfile
✔	6oSL	20185	2022-12-11	2019-05-01	3.0	3.04	—	3.0	0.010	1.06	0.0	0.07	13.47	0.00	2.308	12.61	2.44	12.3	87.7	0.0	-4.40	0.45	0.79	1.34	3.0	0.005	0.80	0.0	0.06	16.12	0.00	2.266	12.12	8.54	10.9	89.1	0.0	-3.41	1.25	0.45	0.80	2.18	4060	590	10	0	0	0	0	logfile
✔	6N9Y	0383	2022-12-11	2018-12-04	4.0	3.80	—	3.7	0.008	1.10	0.0	0.05	10.30	0.01	2.229	5.13	0.42	9.1	90.9	0.0	-4.98	0.38	0.73	—	3.7	0.003	0.69	0.0	0.04	15.57	0.00	2.155	14.28	0.00	8.9	91.1	0.0	-1.04	1.76	0.40	0.78	—	4527	552	1	0	0	0	0	logfile
✔	6iAC	4435	2022-12-11	2018-11-26	3.9	4.05	—	4.0	0.009	1.31	0.0	0.07	12.35	0.01	2.250	5.01	1.10	12.0	87.9	0.2	-4.54	0.26	0.77	1.92	4.0	0.004	0.92	0.0	0.05	16.36	0.01	2.075	12.76	0.37	8.6	91.4	0.0	-0.81	1.04	0.26	0.76	1.41	8210	1057	11	0	0	0	0	logfile
✔	6CU8	7619	2022-12-11	2018-03-23	3.6	3.65	—	4.2	0.004	0.73	0.0	0.06	7.75	0.00	2.412	6.41	0.00	5.1	94.9	0.0	-2.86	0.45	0.73	-0.16	4.2	0.005	0.79	0.0	0.06	12.89	0.00	2.161	16.36	0.65	15.9	84.1	0.0	-3.37	1.79	0.42	0.73	2.58	2880	410	10	0	0	0	0	logfile
✔	5LY6	4118	2022-12-11	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.004	0.81	0.0	0.04	13.96	0.00	2.167	15.68	0.24	10.2	89.3	0.4	-2.62	3.61	0.40	0.77	—	3725	471	1	0	0	0	0	logfile
✔	6PoS	20418	2022-12-11	2019-07-05	4.12	4.39	—	4.2	0.003	0.68	0.0	0.04	11.58	0.01	2.116	2.48	0.00	0.1	99.9	0.0	-2.43	0.80	0.77	—	4.2	0.003	0.56	0.0	0.04	13.04	0.00	1.941	10.10	0.07	3.5	96.5	0.0	-0.16	1.03	0.82	0.80	—	53503	3425	20	0	13	0	26853	logfile
✔	6U2K	20621	2022-12-11	2019-08-20	2.93	3.31	3.29	3.3	0.010	0.98	0.0	0.06	10.03	0.01	2.354	3.34	0.19	9.7	90.3	0.0	-4.70	0.70	0.83	4.65	3.3	0.004	0.70	0.0	0.04	15.05	0.00	2.275	6.57	2.12	8.2	91.8	0.0	-2.00	1.20	0.65	0.81	2.97	4719	604	3	0	4	0	0	logfile
✔	6S8H	10122	2022-12-11	2019-07-10	3.7	3.89	—	3.8	0.011	1.64	0.0	0.26	17.14	0.01	2.300	5.75	0.12	9.9	89.8	0.2	-6.48	0.67	0.83	0.98	3.8	0.004	0.98	0.0	0.09	18.00	0.00	2.087	11.06	0.62	8.4	91.5	0.1	-2.12	0.65	0.67	0.84	0.83	7818	959	6	0	7	0	0	logfile
✔	6SXA	10337	2022-12-11	2019-09-25	3.6	5.82	4.21	4.6	0.010	1.37	5.0	0.09	15.20	0.01	2.245	15.33	3.18	10.9	88.9	0.2	-4.66	0.83	0.67	-0.05	4.6	0.003	0.83	0.0	0.04	15.14	0.00	2.260	11.53	0.14	6.2	93.7	0.1	-0.26	1.73	0.91	0.85	0.41	7014	943	2	0	0	0	0	logfile
✔	6Po3	20408	2022-12-11	2019-07-03	4.28	4.38	—	4.3	0.003	0.65	0.0	0.04	11.03	0.00	2.179	2.55	0.00	0.4	99.6	0.0	-1.68	0.75	0.75	—	4.3	0.004	0.60	0.0	0.04	13.00	0.00	1.946	10.72	0.00	4.3	95.7	0.0	-0.19	2.56	0.79	0.79	—	53225	3406	20	0	12	0	26724	logfile
✔	6NPK	0472	2022-12-11	2019-01-17	3.6	3.66	—	3.6	0.004	0.82	0.0	0.05	13.02	0.01	2.320	3.96	6.13	6.6	93.4	0.0	-5.05	0.58	0.80	2.02	3.7	0.003	0.66	0.0	0.04	14.31	0.00	2.221	8.83	0.13	7.0	93.0	0.0	-0.12	1.23	0.61	0.81	2.24	7134	944	2	0	0	0	0	logfile
✔	5ZEU	6923	2022-12-11	2018-02-28	3.7	3.76	—	3.7	0.007	1.11	0.0	0.05	16.39	0.01	1.086	17.30	1.40	8.6	90.3	1.1	-4.22	0.59	0.75	1.73	3.7	0.005	0.72	0.0	0.04	16.22	0.01	2.039	14.74	1.10	9.9	89.9	0.3	-1.18	1.36	0.61	0.79	1.67	52954	2406	22	1583	0	0	0	logfile
✔	6UAN	20708	2022-12-11	2019-09-11	3.9	4.03	—	3.9	0.007	0.95	0.0	0.06	16.09	0.01	2.256	7.62	1.03	8.1	91.9	0.0	-5.36	0.76	0.80	1.99	3.9	0.003	0.76	0.0	0.04	17.07	0.00	2.227	12.92	0.64	5.3	94.7	0.0	-1.50	1.24	0.75	0.78	1.19	7685	1007	4	0	0	0	0	logfile

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