Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6X2Z	22014	2023-04-19	2020-05-21	3.03	3.18	—	3.2	0.005	0.84	0.0	0.05	15.51	0.01	2.131	6.52	0.00	3.6	96.4	0.0	-5.65	0.44	0.86	2.63	3.2	0.003	0.67	0.0	0.04	16.15	0.00	2.195	9.40	0.28	2.9	97.1	0.0	0.74	0.96	0.44	0.87	2.26	3205	420	1	0	3	0	0	logfile
✔	8CTK	26993	2023-04-19	2022-05-15	3.52	3.87	3.55	3.9	0.003	0.69	0.0	0.05	14.37	0.00	2.347	4.69	0.00	3.8	96.2	0.0	-1.07	0.54	0.70	0.86	3.9	0.004	0.60	0.0	0.04	15.16	0.00	2.247	8.41	0.63	3.8	96.2	0.0	-0.33	0.85	0.52	0.72	0.86	3042	376	2	0	0	0	0	logfile
✔	7XU2	33456	2023-04-19	2022-05-18	3.2	3.33	3.13	3.2	0.012	0.95	2.0	0.08	13.93	0.00	2.096	2.07	0.86	5.5	94.5	0.0	-1.37	0.84	0.82	3.25	3.2	0.003	0.54	2.0	0.06	14.43	0.00	2.020	4.95	0.10	4.5	95.5	0.0	-0.53	0.34	0.85	0.85	3.37	52218	3321	18	0	66	0	25248	logfile
✔	7XTZ	33453	2023-04-19	2022-05-18	2.8	2.99	2.73	2.9	0.012	0.90	0.0	0.05	13.57	0.00	2.204	0.77	0.42	3.2	96.8	0.0	-0.29	0.83	0.84	4.09	2.9	0.002	0.48	0.0	0.04	14.33	0.00	2.060	2.70	0.70	3.1	96.9	0.0	0.02	0.30	0.83	0.86	3.72	51900	3291	21	0	75	0	25032	logfile
✔	7T2E	25611	2023-04-19	2021-12-03	2.7	3.14	—	3.0	0.003	0.54	0.0	0.04	16.11	0.00	2.242	1.92	1.18	0.3	99.7	0.0	0.14	0.34	0.84	5.04	3.0	0.002	0.49	0.0	0.04	16.21	0.00	2.222	2.35	1.18	0.3	99.7	0.0	0.45	0.13	0.36	0.86	4.79	2390	312	2	0	0	0	0	logfile
✔	7K9K	22751	2023-04-19	2020-09-29	3.14	3.44	3.39	3.5	0.006	0.96	0.0	0.06	13.51	0.01	2.188	11.03	0.00	3.8	96.2	0.0	-1.35	0.46	0.77	2.35	3.5	0.003	0.67	0.0	0.04	15.32	0.00	2.262	9.28	0.87	3.6	96.4	0.0	-0.79	0.45	0.46	0.78	2.30	3202	402	4	0	4	0	0	logfile
✘	7WTP	32794	2023-04-19	2022-02-05	3.8	3.62	—	3.4	0.007	0.96	0.0	0.05	16.68	0.01	2.103	8.20	0.04	8.7	91.1	0.1	-2.27	0.83	0.82	1.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52944	3296	20	1255	1	0	0	logfile
✔	7XU4	33458	2023-04-19	2022-05-18	3.2	3.46	3.16	3.3	0.012	1.02	0.0	0.05	13.99	0.00	2.094	2.64	0.31	6.3	93.7	0.0	-1.31	0.83	0.82	3.45	3.3	0.003	0.56	0.0	0.04	14.41	0.00	2.006	5.79	0.10	5.5	94.5	0.0	-0.62	1.11	0.84	0.84	3.07	52371	3330	18	0	69	0	25311	logfile
✔	7XU0	33454	2023-04-19	2022-05-18	2.9	3.11	2.88	3.0	0.012	0.91	0.0	0.05	13.40	0.00	2.095	2.11	0.14	3.1	96.9	0.0	-0.43	0.83	0.84	4.05	3.0	0.003	0.51	0.0	0.04	14.28	0.00	2.076	3.92	0.66	3.5	96.5	0.0	-0.21	0.33	0.84	0.86	4.10	51995	3300	20	0	72	0	25102	logfile
✔	7XU1	33455	2023-04-19	2022-05-18	3.0	3.16	3.23	3.1	0.012	0.88	1.0	0.07	13.63	0.01	2.068	2.28	0.24	3.9	96.1	0.0	-0.92	0.81	0.82	3.49	3.1	0.003	0.52	1.0	0.05	14.65	0.00	1.988	4.49	0.52	4.0	96.0	0.0	-0.57	0.35	0.83	0.85	3.33	52082	3309	19	0	69	0	25165	logfile
✔	6MLU	9146	2023-04-19	2018-09-28	4.0	4.03	—	4.0	0.005	1.05	0.0	0.06	9.86	0.01	2.406	5.97	0.69	10.6	89.4	0.0	-4.38	0.40	0.78	—	4.0	0.005	1.16	0.0	0.06	17.79	0.01	2.194	31.82	1.39	15.2	84.8	0.0	-2.34	3.45	0.43	0.76	—	2516	306	2	0	0	0	0	logfile
✔	6CT0	7610	2023-04-19	2018-03-21	3.1	3.17	—	3.2	0.010	1.57	0.0	0.07	17.75	0.01	2.273	14.28	17.87	2.7	97.3	0.0	-2.00	0.74	0.86	2.24	3.1	0.005	0.71	0.0	0.05	16.72	0.00	2.109	11.44	0.25	2.2	97.8	0.0	0.95	1.93	0.73	0.84	1.44	105600	13740	60	0	0	0	0	logfile
✔	6CoZ	7545	2023-04-19	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.85	0.0	0.04	5.41	0.00	2.334	6.19	0.00	9.6	90.4	0.0	-1.73	1.59	0.82	0.77	—	1586	320	2	0	0	0	0	logfile
✔	7WX4	32876	2023-04-19	2022-02-14	3.4	3.64	2.77	3.7	0.006	0.59	0.0	0.04	16.46	0.00	2.219	8.20	6.39	7.2	92.8	0.0	-3.40	0.43	0.82	0.72	3.7	0.003	0.57	0.0	0.04	17.71	0.00	2.120	5.71	0.00	6.0	94.0	0.0	-0.14	0.45	0.43	0.82	0.59	1992	260	2	0	0	0	0	logfile
✔	7XH8	33191	2023-04-19	2022-04-07	2.99	3.75	3.32	3.6	0.014	1.81	0.0	0.09	13.61	0.03	2.472	0.80	0.88	3.5	95.5	1.0	-1.88	0.61	0.58	1.19	3.3	0.003	0.85	0.0	0.04	15.31	0.00	2.111	19.43	4.09	6.0	94.0	0.0	-0.67	1.99	0.67	0.74	1.39	3161	404	3	0	0	0	0	logfile
✔	7V0X	26952	2023-04-19	2022-05-11	3.0	2.83	2.92	2.9	0.002	0.63	0.0	0.04	19.06	0.01	2.211	6.52	5.05	4.0	96.0	0.0	0.72	0.61	0.88	3.78	2.9	0.002	0.53	0.0	0.04	19.08	0.00	2.176	7.23	4.38	4.9	95.1	0.0	1.77	0.47	0.60	0.88	3.17	2818	375	1	0	0	0	0	logfile
✔	8HDS	34679	2023-04-19	2022-11-06	3.57	3.28	3.59	3.4	0.007	1.11	0.0	0.06	10.70	0.01	2.312	4.13	0.63	10.9	89.1	0.0	-6.20	0.55	0.77	2.49	3.4	0.004	0.71	0.0	0.04	16.09	0.00	2.083	10.70	0.96	9.7	90.3	0.0	-2.59	1.26	0.56	0.78	1.67	53532	6864	24	0	0	0	0	logfile
✔	7N5F	24188	2023-04-19	2021-06-05	2.7	2.27	2.74	2.0	0.023	1.50	0.0	0.10	9.99	0.01	2.468	0.16	0.00	1.3	98.7	0.0	1.68	0.36	0.75	3.32	1.7	0.003	0.57	0.0	0.04	17.55	0.00	2.307	7.74	1.59	1.6	98.4	0.0	2.51	0.79	0.36	0.78	3.13	3037	386	1	0	1	0	0	logfile
✔	7XiZ	33213	2023-04-19	2022-04-14	3.74	3.27	3.81	3.1	0.013	1.11	0.0	0.06	17.48	0.01	2.386	4.94	0.00	12.8	86.4	0.8	-3.37	0.35	0.71	1.78	3.1	0.004	0.81	0.0	0.05	17.83	0.01	2.218	16.22	1.70	16.6	82.6	0.8	-3.61	1.54	0.37	0.74	1.40	2161	267	1	0	2	0	0	logfile
✔	7V2Q	31660	2023-04-19	2021-08-09	3.24	3.12	3.13	3.0	0.008	1.14	2.0	0.10	15.54	0.00	2.189	6.75	0.16	6.4	93.6	0.1	-1.01	0.82	0.86	1.80	2.9	0.006	0.70	0.0	0.04	16.49	0.01	2.111	10.94	0.62	6.6	93.3	0.0	-0.43	1.48	0.82	0.88	2.05	52904	2875	25	1391	2	0	0	logfile

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