Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6CP7	7549	2021-09-02	2018-03-13	4.1	4.11	—	4.1	0.008	1.41	0.0	0.07	13.16	0.01	1.577	14.31	3.98	6.6	92.9	0.5	-4.99	0.50	0.68	—	4.1	0.008	1.25	0.0	0.05	13.02	0.01	1.898	20.50	0.00	5.1	94.9	0.0	-0.67	1.09	0.51	0.69	—	9164	1234	16	0	0	0	0	logfile
✔	6V6S	21073	2021-09-02	2019-12-05	4.3	3.91	—	3.8	0.006	0.75	1.0	0.05	13.81	0.00	2.102	10.30	0.63	5.0	94.9	0.1	-4.11	0.58	0.50	—	3.8	0.005	0.78	1.0	0.04	13.91	0.00	2.098	11.31	0.04	4.6	95.4	0.0	-0.28	1.21	0.63	0.63	—	106422	13155	53	14	721	0	0	logfile
✔	5W81	8782	2021-09-02	2017-06-21	3.37	3.79	—	3.9	0.008	1.26	1.0	0.06	13.30	0.00	1.940	1.47	0.00	5.1	94.9	0.0	-3.11	0.45	0.60	0.57	3.8	0.015	1.28	0.0	0.04	17.18	0.01	1.918	11.16	0.20	3.2	96.7	0.1	0.16	1.54	0.59	0.83	1.54	9393	1173	1	0	4	0	0	logfile
✔	6S7P	10111	2021-09-02	2019-07-05	3.2	3.38	—	3.4	0.025	1.21	0.0	0.57	10.79	0.01	2.085	3.44	0.33	2.8	97.2	0.0	-3.03	0.65	0.83	4.30	3.4	0.003	1.16	0.0	0.17	14.19	0.00	2.054	13.11	0.22	1.9	98.1	0.0	1.40	1.02	0.65	0.84	2.65	9028	1128	1	0	11	0	0	logfile
✔	6VRK	21369	2021-09-02	2020-02-07	4.1	4.22	4.47	4.2	0.003	0.63	0.0	0.04	13.80	0.00	2.245	10.32	0.00	6.5	93.5	0.0	-3.10	0.47	0.69	—	4.2	0.003	0.69	0.0	0.04	13.56	0.00	2.057	15.65	0.00	7.0	93.0	0.0	-1.06	1.27	0.48	0.68	—	6141	764	4	0	4	0	0	logfile
✘	6JH6	9825	2021-09-02	2019-02-17	4.8	5.31	—	4.8	0.006	1.07	1.0	0.05	11.37	0.01	2.197	12.06	0.58	10.8	88.9	0.3	-4.03	0.79	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	108924	14244	12	0	8	0	0	logfile
✔	6VJA	21212	2021-09-02	2020-01-15	3.3	3.74	3.48	3.6	0.031	2.19	0.0	0.33	14.97	0.01	2.193	4.71	0.49	4.2	95.7	0.1	0.64	0.61	0.80	2.94	3.7	0.003	0.74	0.0	0.04	15.41	0.01	2.139	10.99	0.68	3.2	96.8	0.0	0.85	1.30	0.61	0.80	2.37	9342	1204	8	0	6	0	0	logfile
✔	6UKJ	20806	2021-09-02	2019-10-05	3.3	3.53	3.32	3.4	0.017	1.38	0.0	0.19	14.30	0.01	2.114	6.29	0.79	4.5	95.1	0.3	-3.21	0.62	0.81	3.08	3.4	0.003	0.66	0.0	0.04	16.03	0.00	2.115	13.02	0.40	4.0	96.0	0.0	0.30	1.54	0.65	0.82	2.31	4625	582	4	0	1	0	0	logfile
✔	6JRR	9879	2021-09-02	2019-04-05	3.9	4.09	—	3.9	0.010	1.13	4.0	0.06	15.90	0.01	1.827	8.45	0.80	10.2	89.5	0.2	-5.20	0.76	0.81	1.54	3.9	0.003	0.74	0.0	0.04	17.04	0.01	2.148	12.36	0.53	8.6	91.3	0.1	-1.43	0.65	0.76	0.81	0.84	109132	14268	12	0	16	0	0	logfile
✔	6F1Y	4171	2021-09-02	2017-11-23	3.4	4.18	—	3.6	0.011	1.94	0.0	0.09	11.72	0.01	2.069	14.25	0.74	17.2	82.6	0.2	-4.92	0.50	0.74	0.93	3.6	0.003	0.90	0.0	0.04	15.85	0.00	2.250	16.59	0.49	8.3	91.7	0.0	-1.16	2.18	0.50	0.76	0.66	4316	472	2	0	111	0	0	logfile
✔	6DZY	8942	2021-09-02	2018-07-05	4.1	4.52	4.39	4.6	0.008	0.95	4.0	0.08	8.53	0.01	1.386	8.88	1.32	4.7	95.2	0.1	-2.99	0.42	0.61	—	4.5	0.003	0.82	0.0	0.04	13.26	0.00	2.174	16.41	0.00	5.5	94.4	0.1	-0.25	1.93	0.45	0.69	—	7842	988	5	0	4	0	0	logfile
✔	6SNi	10258	2021-09-02	2019-08-24	3.0	3.18	—	3.2	0.028	1.62	0.0	0.18	15.50	0.01	2.044	24.13	8.07	9.2	90.5	0.2	-4.21	0.64	0.73	2.67	3.2	0.008	1.15	0.0	0.05	15.07	0.01	2.172	9.33	3.98	4.8	95.1	0.1	-0.21	1.26	0.67	0.85	2.66	7510	918	7	0	8	7	0	logfile
✘	5UAR	8461	2021-09-02	2016-12-19	3.73	4.36	—	4.4	0.008	1.18	0.0	0.06	13.30	0.00	2.393	0.26	1.06	7.4	92.5	0.1	-3.58	0.58	0.77	1.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9489	1184	1	0	2	0	0	logfile
✔	6FRK	4300	2021-09-02	2018-02-16	3.7	3.82	3.64	3.8	0.006	1.06	0.0	0.06	20.11	0.01	1.793	15.69	16.63	10.8	88.6	0.6	-5.20	0.69	0.84	1.14	3.8	0.005	0.74	2.0	0.04	18.37	0.01	1.568	15.98	0.26	8.8	91.0	0.1	-1.38	1.66	0.69	0.85	1.43	159957	8464	70	4268	159	0	0	logfile
✔	6MEo	9108	2021-09-02	2018-09-06	3.9	3.97	3.94	3.9	0.006	0.93	1.0	0.16	10.01	0.01	1.985	7.86	1.01	7.3	92.7	0.0	-4.26	0.54	0.58	1.37	3.9	0.004	0.94	0.0	0.07	15.81	0.00	2.116	16.20	0.76	7.3	92.5	0.1	-1.50	1.33	0.64	0.79	1.61	7465	887	5	0	32	0	0	logfile
✘	6CP5	7547	2021-09-02	2018-03-13	4.2	4.19	—	4.2	0.003	0.83	0.0	0.04	10.90	0.00	1.205	23.98	2.24	7.2	92.0	0.8	-4.36	0.50	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9413	1234	19	0	4	0	0	logfile
✔	6CoY	7544	2021-09-02	2018-03-13	3.36	3.52	3.38	3.6	0.020	1.43	0.0	0.09	10.54	0.01	2.242	1.38	0.00	2.8	96.7	0.4	-0.30	0.70	0.86	2.95	3.6	0.004	0.61	0.0	0.04	13.45	0.01	2.241	6.54	0.00	3.5	96.5	0.0	3.20	0.57	0.61	0.83	1.95	7156	930	4	0	4	0	0	logfile
✘	5A7U	3079	2021-09-02	2015-07-10	4.8	3.82	—	4.6	0.020	3.41	3.0	0.25	21.78	0.08	2.651	28.57	25.00	24.0	72.0	4.0	-6.05	-0.01	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	1	0	1	0	231	logfile
✔	6FU8	4319	2021-09-02	2018-02-26	3.2	4.42	2.97	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.003	0.73	0.0	0.04	15.97	0.00	2.217	11.73	0.00	10.0	88.8	1.2	-2.85	3.17	0.24	0.68	1.82	1364	82	1	0	0	0	711	logfile
✔	6GCS	4384	2021-09-02	2018-04-19	4.32	4.51	—	4.3	0.010	1.35	3.0	0.98	12.07	0.01	2.231	8.76	0.73	13.4	85.9	0.8	-4.79	0.77	0.78	—	4.3	0.009	1.69	0.0	0.30	12.62	0.00	2.053	20.47	0.02	12.6	87.1	0.3	-2.01	0.83	0.78	0.79	—	55137	6864	53	0	667	0	0	logfile

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