Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7A5J	11645	2022-07-02	2020-08-21	3.1	2.70	3.04	3.0	0.009	0.98	0.0	0.05	17.10	0.01	1.187	4.25	0.84	5.2	94.7	0.2	-4.41	0.63	0.73	2.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	106132	8540	71	1694	205	0	0	logfile
✔	6VEC	21155	2022-07-02	2019-12-31	3.9	3.99	—	3.9	0.008	1.02	0.0	0.05	10.32	0.01	1.923	3.67	0.95	7.2	92.3	0.5	-3.21	0.79	0.82	2.06	3.8	0.004	0.70	0.0	0.04	13.16	0.00	1.941	10.00	0.19	5.8	93.9	0.3	0.10	1.64	0.80	0.87	1.64	53064	6721	33	0	22	0	0	logfile
✔	6W6M	21559	2022-07-02	2020-03-17	2.7	2.83	2.64	2.8	0.008	1.02	14.0	0.06	12.30	0.01	1.953	13.25	2.97	7.8	92.2	0.0	-3.02	0.62	0.73	2.71	2.8	0.004	0.76	0.0	0.05	14.72	0.01	2.138	6.36	3.11	5.9	94.1	0.0	-1.21	1.69	0.73	0.82	2.52	43638	5768	14	0	0	0	0	logfile
✔	6W1N	21513	2022-07-02	2020-03-04	4.0	4.43	4.16	4.1	0.002	0.55	0.0	0.04	12.17	0.00	2.226	6.56	0.41	1.4	98.6	0.0	-0.42	0.72	0.75	—	4.1	0.003	0.77	0.0	0.04	14.18	0.00	2.104	12.19	0.22	3.1	96.9	0.0	0.83	0.77	0.74	0.80	—	105232	13984	12	0	1320	0	0	logfile
✔	7JZU	22574	2022-07-02	2020-09-02	3.1	3.26	3.10	3.3	0.015	1.33	0.0	0.08	9.63	0.01	2.509	0.78	0.00	3.3	96.7	0.0	0.23	0.69	0.76	4.15	3.3	0.003	0.59	0.0	0.04	14.23	0.00	2.252	5.19	0.00	3.3	96.7	0.0	0.46	1.61	0.69	0.80	4.31	1987	248	3	0	3	0	0	logfile
✔	7JZM	22533	2022-07-02	2020-09-02	3.5	3.74	3.50	3.7	0.015	1.37	0.0	0.08	9.25	0.01	2.420	1.01	0.00	2.0	98.0	0.0	0.75	0.75	0.78	4.01	3.7	0.003	0.69	0.0	0.04	13.98	0.00	2.201	6.85	0.00	2.4	97.6	0.0	0.71	1.24	0.75	0.79	2.69	2033	258	3	0	3	0	0	logfile
✔	7LY0	23581	2022-07-02	2021-03-05	2.6	2.57	2.63	2.7	0.012	1.17	0.0	0.08	9.71	0.01	2.515	1.10	0.36	1.2	98.8	0.0	1.70	0.61	0.70	5.23	2.7	0.009	0.82	0.0	0.04	15.47	0.01	2.156	8.84	2.50	2.1	97.9	0.0	0.63	1.63	0.70	0.77	4.04	2805	354	5	0	6	0	0	logfile
✔	7LXW	23577	2022-07-02	2021-03-05	2.8	3.13	2.86	3.2	0.012	1.20	0.0	0.07	10.03	0.01	2.593	0.61	0.00	1.3	98.7	0.0	0.97	0.78	0.81	5.37	3.2	0.004	0.65	0.0	0.05	15.02	0.01	2.225	10.77	1.52	1.7	98.3	0.0	0.44	1.17	0.72	0.82	5.04	2524	317	5	0	5	0	0	logfile
✔	7DA4	30622	2022-07-02	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	79.80	0.00	50.0	50.0	0.0	-8.65	0.39	0.66	—	4.3	0.004	0.95	0.0	0.04	11.56	0.00	2.266	19.19	0.00	18.3	81.7	0.0	-5.96	3.11	0.36	0.58	—	507	66	3	0	0	0	0	logfile
✔	7C1D	30269	2022-07-02	2020-05-03	3.8	4.18	—	4.3	0.004	0.71	0.0	0.05	13.99	0.00	2.367	18.87	0.00	20.4	79.6	0.0	-6.46	0.34	0.74	3.47	6.5	0.004	0.69	0.0	0.05	14.90	0.00	2.239	18.63	0.52	24.5	75.5	0.0	-4.57	2.82	0.39	0.75	2.42	2034	306	6	0	0	0	0	logfile
✔	6U5F	20644	2022-07-02	2019-08-27	3.8	3.74	—	3.7	0.007	1.01	0.0	0.06	10.02	0.01	2.238	6.88	0.38	11.0	89.0	0.0	-5.43	0.61	0.81	3.06	3.7	0.003	0.71	0.0	0.04	15.10	0.00	1.989	12.67	0.51	8.4	91.6	0.0	-2.32	1.26	0.61	0.81	2.40	107550	14232	54	0	0	0	0	logfile
✔	6ZS5	11388	2022-07-02	2020-07-15	3.5	4.02	3.66	3.8	0.008	1.01	1.0	0.06	15.42	0.01	2.202	4.52	0.00	4.7	95.3	0.0	-2.98	0.67	0.80	2.81	3.9	0.003	0.71	0.0	0.04	16.58	0.00	2.239	9.05	0.93	3.2	96.8	0.0	-1.66	2.34	0.67	0.79	2.65	2036	257	4	0	7	0	0	logfile
✔	6X0V	21985	2022-07-02	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.46	0.0	0.04	13.09	0.00	2.230	19.17	0.00	6.0	94.0	0.0	2.59	1.22	0.40	0.75	—	1384	211	4	0	0	0	62	logfile
✔	6ZNL	11313	2022-07-02	2020-07-06	3.8	4.07	3.64	3.8	0.014	1.87	3.0	0.09	14.11	0.00	1.790	2.82	0.02	5.8	94.0	0.2	-2.54	0.78	0.70	1.46	3.8	0.009	0.87	1.0	0.04	15.89	0.00	1.527	11.82	0.06	3.6	96.3	0.1	0.39	1.59	0.86	0.84	1.62	52864	7001	34	0	13	0	0	logfile
✔	7K45	22660	2022-07-02	2020-09-14	3.7	3.90	3.76	3.9	0.014	1.41	0.0	0.08	9.47	0.01	2.568	0.35	0.00	2.2	97.8	0.0	0.92	0.79	0.78	4.02	3.9	0.020	1.45	1.0	0.06	14.84	0.01	2.277	8.49	0.00	3.2	96.8	0.0	0.06	1.30	0.80	0.80	2.81	3038	419	4	0	2	0	0	logfile
✔	7LCK	23276	2022-07-02	2021-01-11	3.24	3.84	3.15	3.6	0.008	1.05	4.0	0.07	14.23	0.01	2.160	7.79	1.16	6.7	93.3	0.0	-0.93	0.69	0.79	2.21	3.7	0.003	0.62	0.0	0.04	15.17	0.00	2.228	4.83	0.58	4.1	95.9	0.0	0.64	0.55	0.66	0.79	2.04	3258	390	1	0	1	11	0	logfile
✔	6RJU	4906	2022-07-02	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	10.0	0.003	0.66	0.0	0.03	16.23	0.00	2.422	6.03	0.00	3.9	96.1	0.0	-0.32	1.40	0.27	0.03	-0.67	1992	131	1	0	0	0	997	logfile
✔	6WYK	21967	2022-07-02	2020-05-13	4.0	4.14	—	4.2	0.007	0.77	0.0	0.05	11.98	0.00	2.223	5.97	0.00	3.4	96.6	0.0	-2.28	0.62	0.77	—	4.2	0.005	0.89	0.0	0.05	16.27	0.01	2.217	12.88	0.31	1.9	98.1	0.0	1.71	0.87	0.61	0.77	—	3083	415	1	0	0	0	0	logfile
✔	7CYH	30500	2022-07-02	2020-09-03	3.9	4.13	—	4.1	0.011	1.18	0.0	0.06	9.76	0.01	2.087	28.64	0.87	9.8	89.7	0.5	-4.10	0.51	0.61	2.53	4.1	0.005	0.94	0.0	0.05	14.19	0.01	2.099	16.30	0.58	9.4	89.9	0.7	-2.14	1.06	0.57	0.76	1.64	3241	423	3	0	0	0	0	logfile
✘	7BC5	12139	2022-07-02	2020-12-18	3.1	3.06	3.11	3.1	0.005	1.05	0.0	0.05	15.92	0.01	2.314	7.83	0.76	8.2	91.8	0.0	-5.64	0.23	0.62	0.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1200	161	1	0	0	0	0	logfile

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