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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6QJH | 4563 | 2022-12-11 | 2019-01-24 | 3.3 | 3.70 | 2.77 | 3.6 | 0.012 | 1.21 | 3.0 | 0.10 | 14.39 | 0.01 | 2.673 | 1.49 | 1.96 | 7.0 | 93.0 | 0.0 | -3.22 | 0.36 | 0.83 | 2.97 | 3.6 | 0.003 | 0.61 | 0.0 | 0.05 | 15.77 | 0.00 | 2.278 | 5.61 | 0.00 | 2.3 | 97.7 | 0.0 | -2.55 | 1.57 | 0.30 | 0.78 | 2.85 | 1302 | 177 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N0G | 9315 | 2022-12-11 | 2018-11-07 | 3.6 | 3.75 | — | 3.7 | 0.008 | 0.87 | 0.0 | 0.06 | 8.90 | 0.01 | 2.232 | 6.49 | 0.18 | 2.7 | 97.3 | 0.0 | -3.39 | 0.81 | 0.85 | 3.75 | 3.7 | 0.004 | 0.69 | 0.0 | 0.04 | 15.03 | 0.00 | 2.090 | 14.56 | 0.40 | 2.3 | 97.7 | 0.0 | 0.08 | 2.43 | 0.81 | 0.86 | 2.81 | 55644 | 7545 | 57 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QJP | 4565 | 2022-12-11 | 2019-01-24 | 3.5 | 3.64 | 2.32 | 4.1 | 0.009 | 1.01 | 0.0 | 0.07 | 9.52 | 0.01 | 2.605 | 1.16 | 0.00 | 3.2 | 96.8 | 0.0 | -2.50 | 0.37 | 0.74 | 3.05 | 4.2 | 0.003 | 0.70 | 0.0 | 0.05 | 12.40 | 0.00 | 2.347 | 10.42 | 0.00 | 1.1 | 98.9 | 0.0 | -3.47 | 1.59 | 0.32 | 0.72 | 4.10 | 816 | 105 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UES | 20755 | 2022-12-11 | 2019-09-23 | 3.7 | 3.94 | — | 3.2 | 0.002 | 0.48 | 0.0 | 0.02 | 17.15 | 0.00 | 2.100 | 7.29 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.87 | 0.76 | — | 3.3 | 0.007 | 0.87 | 0.0 | 0.04 | 21.10 | 0.01 | 1.792 | 36.17 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.34 | 0.88 | 0.83 | — | 3842 | 0 | 1 | 119 | 0 | 0 | 1291 | logfile |
✔ | 6NT7 | 0504 | 2022-12-11 | 2019-01-28 | 4.0 | 4.27 | — | 4.1 | 0.008 | 0.91 | 0.0 | 0.05 | 14.13 | 0.01 | 2.238 | 5.64 | 0.00 | 6.2 | 93.8 | 0.0 | -3.29 | 0.75 | 0.85 | — | 4.1 | 0.006 | 0.75 | 0.0 | 0.04 | 15.86 | 0.00 | 2.209 | 10.97 | 0.78 | 4.6 | 95.4 | 0.0 | 0.58 | 1.19 | 0.76 | 0.85 | — | 4729 | 588 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 6XYP | 10651 | 2022-12-11 | 2020-01-30 | 3.29 | 3.37 | 3.04 | 3.4 | 0.008 | 0.64 | 0.0 | 0.05 | 13.98 | 0.00 | 2.151 | 8.09 | 0.00 | 2.8 | 97.2 | 0.0 | -5.04 | 0.47 | 0.84 | 4.49 | 3.4 | 0.006 | 0.62 | 0.0 | 0.05 | 15.80 | 0.00 | 2.188 | 4.94 | 0.20 | 2.4 | 97.6 | 0.0 | -3.45 | 0.35 | 0.47 | 0.84 | 5.05 | 4955 | 725 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XYQ | 10652 | 2022-12-11 | 2020-01-30 | 3.09 | 3.30 | 2.79 | 3.3 | 0.007 | 0.71 | 0.0 | 0.05 | 12.97 | 0.00 | 2.130 | 9.08 | 0.00 | 3.5 | 96.5 | 0.0 | -4.52 | 0.46 | 0.84 | 3.97 | 3.3 | 0.004 | 0.55 | 0.0 | 0.05 | 15.09 | 0.00 | 2.232 | 8.09 | 0.82 | 2.3 | 97.7 | 0.0 | -3.28 | 0.44 | 0.47 | 0.85 | 4.77 | 4955 | 725 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oSL | 20185 | 2022-12-11 | 2019-05-01 | 3.0 | 3.04 | — | 3.0 | 0.010 | 1.06 | 0.0 | 0.07 | 13.47 | 0.00 | 2.308 | 12.61 | 2.44 | 12.3 | 87.7 | 0.0 | -4.40 | 0.45 | 0.79 | 1.34 | 3.0 | 0.005 | 0.80 | 0.0 | 0.06 | 16.12 | 0.00 | 2.266 | 12.12 | 8.54 | 10.9 | 89.1 | 0.0 | -3.41 | 1.25 | 0.45 | 0.80 | 2.18 | 4060 | 590 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N9Y | 0383 | 2022-12-11 | 2018-12-04 | 4.0 | 3.80 | — | 3.7 | 0.008 | 1.10 | 0.0 | 0.05 | 10.30 | 0.01 | 2.229 | 5.13 | 0.42 | 9.1 | 90.9 | 0.0 | -4.98 | 0.38 | 0.73 | — | 3.7 | 0.003 | 0.69 | 0.0 | 0.04 | 15.57 | 0.00 | 2.155 | 14.28 | 0.00 | 8.9 | 91.1 | 0.0 | -1.04 | 1.76 | 0.40 | 0.78 | — | 4527 | 552 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6iAC | 4435 | 2022-12-11 | 2018-11-26 | 3.9 | 4.05 | — | 4.0 | 0.009 | 1.31 | 0.0 | 0.07 | 12.35 | 0.01 | 2.250 | 5.01 | 1.10 | 12.0 | 87.9 | 0.2 | -4.54 | 0.26 | 0.77 | 1.92 | 4.0 | 0.004 | 0.92 | 0.0 | 0.05 | 16.36 | 0.01 | 2.075 | 12.76 | 0.37 | 8.6 | 91.4 | 0.0 | -0.81 | 1.04 | 0.26 | 0.76 | 1.41 | 8210 | 1057 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CU8 | 7619 | 2022-12-11 | 2018-03-23 | 3.6 | 3.65 | — | 4.2 | 0.004 | 0.73 | 0.0 | 0.06 | 7.75 | 0.00 | 2.412 | 6.41 | 0.00 | 5.1 | 94.9 | 0.0 | -2.86 | 0.45 | 0.73 | -0.16 | 4.2 | 0.005 | 0.79 | 0.0 | 0.06 | 12.89 | 0.00 | 2.161 | 16.36 | 0.65 | 15.9 | 84.1 | 0.0 | -3.37 | 1.79 | 0.42 | 0.73 | 2.58 | 2880 | 410 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LY6 | 4118 | 2022-12-11 | 2016-09-24 | 4.5 | 4.72 | — | 4.3 | 0.006 | 1.24 | 0.0 | 0.03 | 24.28 | 0.02 | 1.526 | 94.62 | 36.32 | 20.9 | 74.2 | 4.9 | -5.32 | 0.34 | 0.59 | — | 4.4 | 0.004 | 0.81 | 0.0 | 0.04 | 13.96 | 0.00 | 2.167 | 15.68 | 0.24 | 10.2 | 89.3 | 0.4 | -2.62 | 3.61 | 0.40 | 0.77 | — | 3725 | 471 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PoS | 20418 | 2022-12-11 | 2019-07-05 | 4.12 | 4.39 | — | 4.2 | 0.003 | 0.68 | 0.0 | 0.04 | 11.58 | 0.01 | 2.116 | 2.48 | 0.00 | 0.1 | 99.9 | 0.0 | -2.43 | 0.80 | 0.77 | — | 4.2 | 0.003 | 0.56 | 0.0 | 0.04 | 13.04 | 0.00 | 1.941 | 10.10 | 0.07 | 3.5 | 96.5 | 0.0 | -0.16 | 1.03 | 0.82 | 0.80 | — | 53503 | 3425 | 20 | 0 | 13 | 0 | 26853 | logfile |
✔ | 6U2K | 20621 | 2022-12-11 | 2019-08-20 | 2.93 | 3.31 | 3.29 | 3.3 | 0.010 | 0.98 | 0.0 | 0.06 | 10.03 | 0.01 | 2.354 | 3.34 | 0.19 | 9.7 | 90.3 | 0.0 | -4.70 | 0.70 | 0.83 | 4.65 | 3.3 | 0.004 | 0.70 | 0.0 | 0.04 | 15.05 | 0.00 | 2.275 | 6.57 | 2.12 | 8.2 | 91.8 | 0.0 | -2.00 | 1.20 | 0.65 | 0.81 | 2.97 | 4719 | 604 | 3 | 0 | 4 | 0 | 0 | logfile |
✔ | 6S8H | 10122 | 2022-12-11 | 2019-07-10 | 3.7 | 3.89 | — | 3.8 | 0.011 | 1.64 | 0.0 | 0.26 | 17.14 | 0.01 | 2.300 | 5.75 | 0.12 | 9.9 | 89.8 | 0.2 | -6.48 | 0.67 | 0.83 | 0.98 | 3.8 | 0.004 | 0.98 | 0.0 | 0.09 | 18.00 | 0.00 | 2.087 | 11.06 | 0.62 | 8.4 | 91.5 | 0.1 | -2.12 | 0.65 | 0.67 | 0.84 | 0.83 | 7818 | 959 | 6 | 0 | 7 | 0 | 0 | logfile |
✔ | 6SXA | 10337 | 2022-12-11 | 2019-09-25 | 3.6 | 5.82 | 4.21 | 4.6 | 0.010 | 1.37 | 5.0 | 0.09 | 15.20 | 0.01 | 2.245 | 15.33 | 3.18 | 10.9 | 88.9 | 0.2 | -4.66 | 0.83 | 0.67 | -0.05 | 4.6 | 0.003 | 0.83 | 0.0 | 0.04 | 15.14 | 0.00 | 2.260 | 11.53 | 0.14 | 6.2 | 93.7 | 0.1 | -0.26 | 1.73 | 0.91 | 0.85 | 0.41 | 7014 | 943 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Po3 | 20408 | 2022-12-11 | 2019-07-03 | 4.28 | 4.38 | — | 4.3 | 0.003 | 0.65 | 0.0 | 0.04 | 11.03 | 0.00 | 2.179 | 2.55 | 0.00 | 0.4 | 99.6 | 0.0 | -1.68 | 0.75 | 0.75 | — | 4.3 | 0.004 | 0.60 | 0.0 | 0.04 | 13.00 | 0.00 | 1.946 | 10.72 | 0.00 | 4.3 | 95.7 | 0.0 | -0.19 | 2.56 | 0.79 | 0.79 | — | 53225 | 3406 | 20 | 0 | 12 | 0 | 26724 | logfile |
✔ | 6NPK | 0472 | 2022-12-11 | 2019-01-17 | 3.6 | 3.66 | — | 3.6 | 0.004 | 0.82 | 0.0 | 0.05 | 13.02 | 0.01 | 2.320 | 3.96 | 6.13 | 6.6 | 93.4 | 0.0 | -5.05 | 0.58 | 0.80 | 2.02 | 3.7 | 0.003 | 0.66 | 0.0 | 0.04 | 14.31 | 0.00 | 2.221 | 8.83 | 0.13 | 7.0 | 93.0 | 0.0 | -0.12 | 1.23 | 0.61 | 0.81 | 2.24 | 7134 | 944 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5ZEU | 6923 | 2022-12-11 | 2018-02-28 | 3.7 | 3.76 | — | 3.7 | 0.007 | 1.11 | 0.0 | 0.05 | 16.39 | 0.01 | 1.086 | 17.30 | 1.40 | 8.6 | 90.3 | 1.1 | -4.22 | 0.59 | 0.75 | 1.73 | 3.7 | 0.005 | 0.72 | 0.0 | 0.04 | 16.22 | 0.01 | 2.039 | 14.74 | 1.10 | 9.9 | 89.9 | 0.3 | -1.18 | 1.36 | 0.61 | 0.79 | 1.67 | 52954 | 2406 | 22 | 1583 | 0 | 0 | 0 | logfile |
✔ | 6UAN | 20708 | 2022-12-11 | 2019-09-11 | 3.9 | 4.03 | — | 3.9 | 0.007 | 0.95 | 0.0 | 0.06 | 16.09 | 0.01 | 2.256 | 7.62 | 1.03 | 8.1 | 91.9 | 0.0 | -5.36 | 0.76 | 0.80 | 1.99 | 3.9 | 0.003 | 0.76 | 0.0 | 0.04 | 17.07 | 0.00 | 2.227 | 12.92 | 0.64 | 5.3 | 94.7 | 0.0 | -1.50 | 1.24 | 0.75 | 0.78 | 1.19 | 7685 | 1007 | 4 | 0 | 0 | 0 | 0 | logfile |