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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7R9M | 24329 | 2024-03-11 | 2021-06-29 | 4.0 | 4.58 | — | 3.9 | 0.002 | 0.38 | 0.0 | 0.04 | 4.68 | 0.00 | 2.214 | 3.88 | 0.00 | 8.3 | 90.9 | 0.8 | -4.83 | 0.85 | 0.77 | — | 3.9 | 0.002 | 0.54 | 0.0 | 0.04 | 9.11 | 0.00 | 2.104 | 8.80 | 0.49 | 3.2 | 96.8 | 0.0 | -0.14 | 1.72 | 0.86 | 0.78 | — | 7727 | 505 | 1 | 0 | 0 | 0 | 3939 | logfile |
✔ | 8P83 | 17540 | 2024-03-23 | 2023-05-31 | 3.87 | 4.82 | 3.91 | 3.8 | 0.003 | 0.66 | 3.0 | 0.06 | 4.70 | 0.00 | 2.470 | 0.84 | 0.00 | 2.0 | 97.9 | 0.1 | 0.35 | 0.81 | 0.58 | — | 3.8 | 0.003 | 0.79 | 0.0 | 0.04 | 5.70 | 0.01 | 2.230 | 9.10 | 0.00 | 7.0 | 93.0 | 0.0 | -1.97 | 2.83 | 0.85 | 0.58 | — | 35656 | 7036 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RLB | 4918 | 2024-03-18 | 2019-05-01 | 4.5 | 4.85 | 4.49 | 4.3 | 0.007 | 0.95 | 0.0 | 0.06 | 4.70 | 0.00 | 2.082 | 0.71 | 0.00 | 4.0 | 95.9 | 0.0 | -1.08 | 0.80 | 0.63 | — | 4.3 | 0.003 | 0.72 | 0.0 | 0.04 | 5.23 | 0.00 | 2.224 | 3.54 | 0.00 | 11.8 | 88.1 | 0.0 | -0.71 | 1.83 | 0.86 | 0.66 | — | 20407 | 4122 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DZW | 30915 | 2024-03-16 | 2021-01-26 | 3.45 | 4.19 | 3.55 | 3.3 | 0.019 | 2.27 | 0.0 | 0.00 | 4.81 | 0.01 | 2.240 | 2.28 | 0.00 | 5.1 | 93.3 | 1.6 | -1.27 | 0.44 | 0.25 | — | 3.3 | 0.003 | 0.81 | 0.0 | 0.00 | 4.68 | 0.00 | 2.178 | 3.51 | 0.00 | 11.9 | 88.0 | 0.1 | -2.05 | 1.99 | 0.77 | 0.73 | — | 13452 | 3363 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 5N6W | 3595 | 2024-03-24 | 2017-02-16 | 4.2 | 4.31 | — | 4.2 | 0.001 | 0.36 | 0.0 | 0.04 | 4.92 | 0.00 | 2.309 | 3.73 | 0.00 | 17.7 | 79.7 | 2.6 | -5.61 | 0.44 | 0.27 | — | 4.2 | 0.004 | 0.77 | 0.0 | 0.04 | 11.33 | 0.01 | 1.844 | 23.01 | 0.00 | 16.5 | 82.9 | 0.6 | -3.97 | 1.95 | 0.72 | 0.73 | — | 40752 | 2512 | 16 | 0 | 0 | 0 | 20032 | logfile |
✔ | 8iQF | 35660 | 2024-03-16 | 2023-03-16 | 4.6 | 4.96 | 4.72 | 4.5 | 0.003 | 0.63 | 0.0 | 0.00 | 4.93 | 0.00 | 1.995 | 4.78 | 0.00 | 4.2 | 95.8 | 0.0 | -0.27 | 0.79 | 0.61 | — | 4.5 | 0.003 | 0.79 | 0.0 | 0.00 | 4.63 | 0.00 | 2.244 | 5.74 | 0.00 | 10.4 | 89.6 | 0.0 | -2.39 | 3.18 | 0.85 | 0.79 | — | 9072 | 2268 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WKK | 32566 | 2024-03-19 | 2022-01-10 | 4.2 | 4.30 | — | 3.9 | 0.006 | 0.63 | 0.0 | 0.04 | 4.94 | 0.00 | 2.138 | 2.83 | 0.00 | 4.7 | 95.2 | 0.1 | -2.36 | 0.46 | 0.60 | — | 3.8 | 0.005 | 0.74 | 0.0 | 0.04 | 5.51 | 0.00 | 2.124 | 3.84 | 0.00 | 9.6 | 90.4 | 0.0 | -0.97 | 0.64 | 0.52 | 0.69 | — | 92821 | 18728 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N95 | 24250 | 2024-03-11 | 2021-06-16 | 4.1 | 3.45 | — | 2.1 | 0.002 | 0.74 | 0.0 | 0.00 | 5.05 | 0.00 | 2.573 | 0.10 | 0.00 | 7.1 | 92.3 | 0.6 | -1.14 | 0.78 | 0.70 | — | 2.1 | 0.004 | 1.01 | 0.0 | 0.00 | 4.97 | 0.00 | 2.503 | 6.53 | 0.00 | 18.1 | 81.7 | 0.2 | -3.27 | 1.81 | 0.85 | 0.83 | — | 7299 | 2433 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oLK | 20115 | 2024-03-18 | 2019-04-16 | 4.0 | 4.14 | — | 4.1 | 0.005 | 1.04 | 0.0 | 0.06 | 5.09 | 0.01 | 2.445 | 0.20 | 0.00 | 2.3 | 97.7 | 0.0 | -0.75 | 0.56 | 0.49 | — | 4.1 | 0.005 | 0.93 | 0.0 | 0.05 | 7.00 | 0.00 | 2.045 | 9.16 | 0.00 | 14.0 | 86.0 | 0.0 | -2.47 | 1.44 | 0.64 | 0.61 | — | 10323 | 2094 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FKJ | 29250 | 2024-03-19 | 2022-12-21 | 4.2 | 4.36 | 4.26 | 4.0 | 0.003 | 0.66 | 0.0 | 0.04 | 5.09 | 0.00 | 2.167 | 6.77 | 0.00 | 9.9 | 89.9 | 0.1 | -0.50 | 0.66 | 0.65 | — | 4.0 | 0.002 | 0.52 | 0.0 | 0.04 | 4.07 | 0.00 | 2.191 | 3.93 | 0.00 | 8.9 | 91.0 | 0.1 | 0.18 | 0.40 | 0.66 | 0.67 | — | 25001 | 5088 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SH4 | 10193 | 2024-03-15 | 2019-08-05 | 4.4 | 4.48 | — | 4.3 | 0.005 | 1.01 | 0.0 | 0.07 | 5.13 | 0.00 | 2.405 | 2.99 | 0.00 | 6.8 | 92.4 | 0.8 | -2.94 | 0.72 | 0.77 | — | 4.3 | 0.003 | 0.69 | 0.0 | 0.04 | 4.47 | 0.00 | 2.243 | 1.49 | 0.00 | 7.0 | 92.8 | 0.2 | 0.09 | 2.27 | 0.74 | 0.83 | — | 12957 | 2632 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DXR | 27774 | 2024-03-15 | 2022-08-02 | 4.0 | 4.31 | 4.01 | 4.2 | 0.004 | 0.81 | 0.0 | 0.04 | 5.27 | 0.00 | 2.255 | 1.54 | 0.00 | 11.6 | 88.3 | 0.1 | -0.80 | 0.67 | 0.71 | — | 4.2 | 0.002 | 0.51 | 0.0 | 0.04 | 3.77 | 0.00 | 2.420 | 0.60 | 0.00 | 8.3 | 91.6 | 0.1 | 1.47 | 0.34 | 0.67 | 0.71 | — | 10435 | 2101 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LHW | 0901 | 2024-03-16 | 2019-12-10 | 4.84 | 5.29 | — | 4.6 | 0.008 | 1.37 | 1.0 | 0.05 | 5.28 | 0.00 | 1.530 | 14.43 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.64 | 0.56 | — | 4.6 | 0.008 | 1.29 | 0.0 | 0.04 | 6.56 | 0.00 | 2.027 | 44.00 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.20 | 0.83 | 0.64 | — | 7644 | 0 | 3 | 0 | 1541 | 0 | 0 | logfile |
✔ | 6LHV | 0900 | 2024-03-16 | 2019-12-10 | 4.59 | 4.86 | — | 4.4 | 0.010 | 1.38 | 0.0 | 0.05 | 5.37 | 0.00 | 1.654 | 9.63 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.70 | 0.59 | — | 4.4 | 0.010 | 1.38 | 0.0 | 0.05 | 6.64 | 0.00 | 2.051 | 53.25 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.58 | 0.84 | 0.81 | — | 8456 | 0 | 3 | 0 | 1707 | 0 | 0 | logfile |
✔ | 6VE2 | 21152 | 2024-03-21 | 2019-12-28 | 4.3 | 4.80 | 4.34 | 4.2 | 0.006 | 1.23 | 0.0 | 0.07 | 5.37 | 0.01 | 2.173 | 16.97 | 0.00 | 4.7 | 94.9 | 0.5 | -0.93 | 0.83 | 0.70 | — | 4.2 | 0.004 | 0.94 | 0.0 | 0.05 | 7.57 | 0.00 | 2.114 | 14.88 | 0.00 | 13.8 | 86.1 | 0.1 | -3.72 | 1.19 | 0.82 | 0.75 | — | 30198 | 6153 | 21 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GTD | 34250 | 2024-03-21 | 2022-09-08 | 4.7 | 4.27 | 4.25 | 4.2 | 0.014 | 2.16 | 0.0 | 0.00 | 5.49 | 0.01 | 2.285 | 3.73 | 0.00 | 8.4 | 90.0 | 1.6 | 0.41 | 0.50 | 0.44 | — | 4.2 | 0.004 | 0.93 | 0.0 | 0.00 | 6.20 | 0.00 | 2.228 | 4.76 | 0.00 | 19.1 | 80.2 | 0.7 | -2.63 | 1.26 | 0.52 | 0.51 | — | 29580 | 7392 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7A97 | 11687 | 2024-03-22 | 2020-09-01 | 4.4 | 5.14 | 4.59 | 4.5 | 0.002 | 0.48 | 1.0 | 0.04 | 5.51 | 0.00 | 2.074 | 4.87 | 0.26 | 10.3 | 89.7 | 0.0 | -4.43 | 0.88 | 0.78 | — | 4.5 | 0.003 | 0.67 | 0.0 | 0.04 | 9.01 | 0.00 | 2.112 | 12.08 | 0.03 | 3.9 | 96.1 | 0.0 | -0.96 | 2.57 | 0.90 | 0.83 | — | 34626 | 4373 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CGL | 16647 | 2024-03-20 | 2023-02-05 | 4.1 | 6.82 | 4.33 | 4.1 | 0.008 | 1.07 | 4.0 | 0.07 | 5.62 | 0.01 | 2.267 | 9.85 | 4.00 | 7.0 | 92.8 | 0.2 | -0.82 | 0.83 | 0.66 | — | 4.2 | 0.004 | 0.69 | 0.0 | 0.05 | 4.51 | 0.00 | 2.176 | 8.72 | 0.00 | 8.4 | 91.6 | 0.0 | -0.02 | 1.39 | 0.90 | 0.82 | — | 16732 | 2212 | 4 | 0 | 0 | 0 | 5572 | logfile |
✔ | 6CoZ | 7545 | 2024-03-10 | 2018-03-13 | 3.36 | 4.78 | — | 4.7 | 0.009 | 1.71 | 0.0 | 0.07 | 5.63 | 0.01 | 2.541 | 0.00 | 0.00 | 3.2 | 96.2 | 0.6 | -2.49 | 0.78 | 0.68 | — | 4.4 | 0.003 | 0.85 | 0.0 | 0.04 | 5.41 | 0.00 | 2.334 | 6.19 | 0.00 | 9.6 | 90.4 | 0.0 | -1.73 | 1.59 | 0.82 | 0.77 | — | 1586 | 320 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SH5 | 10194 | 2024-03-15 | 2019-08-05 | 4.6 | 4.70 | — | 4.5 | 0.005 | 0.97 | 0.0 | 0.05 | 5.65 | 0.01 | 2.474 | 2.35 | 0.00 | 9.0 | 91.0 | 0.0 | -3.63 | 0.80 | 0.76 | — | 4.5 | 0.004 | 0.82 | 0.0 | 0.04 | 5.28 | 0.00 | 2.265 | 5.49 | 0.00 | 16.4 | 83.6 | 0.0 | -2.90 | 1.64 | 0.82 | 0.82 | — | 11529 | 2338 | 7 | 0 | 0 | 0 | 0 | logfile |