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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7R4R | 14315 | 2022-12-22 | 2022-02-09 | 3.9 | 4.20 | — | 6.8 | 0.036 | 4.11 | 135.0 | 0.31 | 17.82 | 0.03 | 1.228 | 59.98 | 7.44 | 8.5 | 91.3 | 0.2 | -3.20 | 0.62 | 0.41 | -0.13 | 5.6 | 0.006 | 1.46 | 18.0 | 0.24 | 16.78 | 0.01 | 1.756 | 47.98 | 2.02 | 11.3 | 88.6 | 0.1 | -2.93 | 1.31 | 0.69 | 0.62 | -0.05 | 50505 | 3293 | 12 | 0 | 43 | 0 | 24171 | logfile |
✔ | 6UMM | 20820 | 2022-12-15 | 2019-10-09 | 3.7 | 6.74 | 4.15 | 4.0 | 0.006 | 0.79 | 0.0 | 0.04 | 13.23 | 0.00 | 2.203 | 12.01 | 0.17 | 4.8 | 95.2 | 0.0 | -2.07 | 0.55 | 0.56 | -0.10 | 4.1 | 0.003 | 0.92 | 0.0 | 0.05 | 14.46 | 0.00 | 2.090 | 19.20 | 0.37 | 3.7 | 96.3 | 0.0 | 0.74 | 1.20 | 0.62 | 0.82 | 0.16 | 23658 | 3184 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SSJ | 10295 | 2022-12-19 | 2019-09-08 | 2.75 | 3.13 | — | 3.2 | 0.016 | 1.23 | 0.0 | 0.08 | 12.91 | 0.01 | 1.227 | 9.87 | 0.54 | 3.2 | 96.8 | 0.0 | -4.66 | 0.49 | 0.47 | -0.09 | 3.1 | 0.003 | 0.66 | 0.0 | 0.04 | 17.27 | 0.00 | 2.169 | 7.11 | 1.32 | 2.5 | 97.5 | 0.0 | 0.35 | 1.66 | 0.68 | 0.83 | 2.15 | 104100 | 13320 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 5G2X | 3331 | 2022-12-14 | 2016-04-16 | 3.8 | 3.49 | — | 3.4 | 0.001 | 0.31 | 0.0 | 0.02 | 11.56 | 0.00 | 2.219 | 4.36 | 0.45 | 19.7 | 74.4 | 5.9 | -5.72 | 0.51 | 0.30 | -0.09 | 3.3 | 0.004 | 0.83 | 0.0 | 0.04 | 19.26 | 0.01 | 1.964 | 33.23 | 0.23 | 18.1 | 80.7 | 1.3 | -5.17 | 1.94 | 0.80 | 0.66 | 0.62 | 19072 | 487 | 3 | 704 | 0 | 0 | 0 | logfile |
✔ | 7UHB | 26511 | 2022-12-11 | 2022-03-26 | 3.0 | 3.17 | 2.97 | 3.2 | 0.011 | 1.35 | 3.0 | 0.12 | 9.86 | 0.00 | 2.562 | 5.08 | 1.42 | 3.0 | 96.6 | 0.4 | -0.52 | 0.52 | 0.54 | -0.09 | 3.1 | 0.004 | 0.63 | 0.0 | 0.04 | 16.50 | 0.00 | 2.265 | 9.19 | 2.84 | 4.1 | 95.9 | 0.0 | 0.51 | 2.44 | 0.70 | 0.84 | 3.45 | 2141 | 270 | 3 | 0 | 3 | 0 | 0 | logfile |
✘ | 6U0M | 20607 | 2022-12-21 | 2019-08-14 | 3.9 | 4.53 | — | 4.3 | 0.005 | 1.05 | 2.0 | 0.06 | 16.74 | 0.01 | 2.211 | 9.82 | 0.47 | 13.2 | 86.7 | 0.2 | -5.28 | 0.81 | 0.63 | -0.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 41146 | 5105 | 16 | 34 | 3 | 0 | 0 | logfile |
✔ | 6Z5U | 11082 | 2022-12-13 | 2020-05-27 | 3.9 | 4.52 | — | 38.0 | 0.021 | 1.88 | 10.0 | 0.11 | 11.91 | 0.01 | 0.901 | 4.94 | 1.69 | 2.0 | 97.7 | 0.3 | -0.47 | 0.18 | 0.03 | -0.06 | 4.5 | 0.003 | 0.76 | 0.0 | 0.04 | 14.53 | 0.00 | 1.928 | 14.28 | 0.41 | 5.2 | 94.8 | 0.0 | -0.62 | 1.59 | 0.29 | 0.18 | 0.56 | 17880 | 2334 | 14 | 0 | 4 | 0 | 0 | logfile |
✔ | 5MPP | 3538 | 2022-12-14 | 2016-12-17 | 3.9 | 4.03 | — | 4.1 | 0.009 | 1.02 | 0.0 | 0.06 | 14.77 | 0.01 | 2.456 | 7.21 | 5.00 | 5.3 | 94.7 | 0.0 | -3.86 | 0.58 | 0.49 | -0.06 | 4.0 | 0.006 | 0.82 | 0.0 | 0.05 | 17.64 | 0.00 | 2.099 | 14.51 | 1.10 | 4.8 | 95.2 | 0.0 | -0.09 | 3.97 | 0.83 | 0.87 | 0.79 | 70560 | 9240 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 7R4Q | 14314 | 2022-12-22 | 2022-02-09 | 3.6 | 3.14 | — | 5.7 | 0.022 | 3.25 | 109.0 | 0.39 | 15.94 | 0.02 | 1.450 | 30.29 | 3.30 | 8.7 | 91.1 | 0.2 | -2.35 | 0.48 | 0.21 | -0.05 | 4.0 | 0.011 | 1.10 | 8.0 | 0.17 | 15.72 | 0.01 | 1.713 | 26.22 | 0.78 | 9.0 | 91.0 | 0.0 | -2.25 | 1.72 | 0.63 | 0.57 | 0.48 | 51420 | 3414 | 13 | 0 | 43 | 0 | 24182 | logfile |
✔ | 6SXA | 10337 | 2022-12-11 | 2019-09-25 | 3.6 | 5.82 | 4.21 | 4.6 | 0.010 | 1.37 | 5.0 | 0.09 | 15.20 | 0.01 | 2.245 | 15.33 | 3.18 | 10.9 | 88.9 | 0.2 | -4.66 | 0.83 | 0.67 | -0.05 | 4.6 | 0.003 | 0.83 | 0.0 | 0.04 | 15.14 | 0.00 | 2.260 | 11.53 | 0.14 | 6.2 | 93.7 | 0.1 | -0.26 | 1.73 | 0.91 | 0.85 | 0.41 | 7014 | 943 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NZM | 12665 | 2022-12-12 | 2021-03-24 | 3.96 | 6.56 | 4.22 | 4.2 | 0.007 | 1.12 | 0.0 | 0.06 | 13.92 | 0.01 | 1.774 | 11.33 | 0.00 | 3.8 | 96.2 | 0.0 | -1.56 | 0.77 | 0.51 | -0.04 | 4.3 | 0.003 | 0.74 | 0.0 | 0.04 | 14.94 | 0.00 | 2.099 | 15.51 | 0.10 | 2.5 | 97.5 | 0.0 | 0.33 | 1.48 | 0.94 | 0.83 | 0.23 | 9109 | 1157 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 7ASN | 11901 | 2022-12-15 | 2020-10-27 | 2.73 | 4.10 | — | 3.0 | 0.008 | 1.05 | 0.0 | 0.05 | 18.86 | 0.01 | 1.953 | 13.57 | 0.48 | 11.3 | 88.6 | 0.1 | -3.27 | 0.46 | 0.23 | -0.03 | 2.4 | 0.005 | 0.78 | 0.0 | 0.04 | 18.80 | 0.01 | 2.007 | 25.75 | 4.70 | 9.7 | 90.3 | 0.0 | -2.30 | 2.50 | 0.87 | 0.80 | 1.21 | 80694 | 2545 | 25 | 2848 | 0 | 0 | 0 | logfile |
✔ | 5VZL | 8749 | 2022-12-13 | 2017-05-29 | 3.9 | 4.38 | — | 19.0 | 0.006 | 0.96 | 0.0 | 0.05 | 14.28 | 0.01 | 2.216 | 7.76 | 0.25 | 8.4 | 91.6 | 0.0 | -4.13 | 0.31 | 0.03 | -0.03 | 17.0 | 0.003 | 0.68 | 0.0 | 0.04 | 15.78 | 0.00 | 1.238 | 14.34 | 0.50 | 5.8 | 94.2 | 0.0 | -1.59 | 1.27 | 0.39 | 0.19 | 0.68 | 13915 | 1451 | 3 | 115 | 1 | 0 | 0 | logfile |
✔ | 7T3L | 25662 | 2022-12-22 | 2021-12-08 | 3.6 | 8.29 | — | 3.5 | 0.004 | 0.74 | 0.0 | 0.05 | 17.15 | 0.01 | 2.223 | 7.77 | 0.52 | 5.0 | 95.0 | 0.0 | -1.92 | 0.73 | 0.45 | -0.03 | 3.4 | 0.002 | 0.60 | 0.0 | 0.04 | 17.41 | 0.00 | 2.115 | 19.01 | 0.08 | 5.3 | 94.7 | 0.0 | 0.42 | 1.17 | 0.94 | 0.84 | -0.02 | 52219 | 6242 | 28 | 200 | 0 | 0 | 0 | logfile |
✔ | 7oPE | 13017 | 2022-12-17 | 2021-05-31 | 3.2 | 5.30 | 3.21 | 5.0 | 0.011 | 1.04 | 2.0 | 0.06 | 15.48 | 0.01 | 1.028 | 4.88 | 0.23 | 8.2 | 91.6 | 0.2 | -3.62 | 0.89 | 0.72 | -0.03 | 5.0 | 0.005 | 0.81 | 0.0 | 0.04 | 17.65 | 0.01 | 1.985 | 36.74 | 1.51 | 9.0 | 90.9 | 0.1 | -1.91 | 1.82 | 0.93 | 0.88 | 0.28 | 93862 | 3818 | 33 | 2996 | 0 | 0 | 0 | logfile |
✔ | 5LKH | 4068 | 2022-12-19 | 2016-07-22 | 3.46 | 5.27 | — | 11.0 | 0.018 | 2.37 | 65.0 | 0.12 | 12.66 | 0.02 | 2.255 | 87.25 | 1.96 | 3.4 | 95.2 | 1.4 | -0.27 | 0.38 | 0.17 | -0.03 | 8.8 | 0.003 | 0.81 | 0.0 | 0.04 | 15.64 | 0.00 | 2.120 | 25.20 | 0.34 | 6.3 | 93.7 | 0.0 | -0.80 | 2.12 | 0.50 | 0.56 | 0.41 | 37345 | 4740 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J7A | 2660 | 2022-12-14 | 2014-06-03 | 3.2 | 3.24 | 3.33 | 3.2 | 0.008 | 1.39 | 49.0 | 0.10 | 19.81 | 0.01 | 1.715 | 4.58 | 15.41 | 10.5 | 85.4 | 4.2 | -2.49 | 0.31 | 0.55 | -0.02 | 3.2 | 0.004 | 0.75 | 0.0 | 0.04 | 18.09 | 0.01 | 1.827 | 17.88 | 1.22 | 9.1 | 89.6 | 1.2 | -1.88 | 2.71 | 0.40 | 0.78 | 1.11 | 68866 | 4106 | 35 | 1682 | 69 | 0 | 0 | logfile |
✔ | 7Q1Z | 13776 | 2022-12-15 | 2021-10-22 | 3.4 | 2.41 | — | 4.0 | 0.003 | 0.55 | 0.0 | 0.04 | 12.53 | 0.00 | 2.074 | 6.33 | 0.04 | 2.2 | 97.8 | 0.0 | 0.60 | 0.48 | 0.31 | -0.02 | 2.1 | 0.004 | 0.75 | 0.0 | 0.05 | 16.03 | 0.00 | 2.048 | 11.98 | 0.78 | 3.9 | 96.1 | 0.0 | -0.28 | 1.65 | 0.75 | 0.75 | 1.75 | 23694 | 2916 | 21 | 0 | 63 | 0 | 0 | logfile |
✔ | 7TR8 | 26082 | 2022-12-18 | 2022-01-28 | 3.6 | 4.39 | — | 4.1 | 0.002 | 0.54 | 0.0 | 0.04 | 14.37 | 0.00 | 2.037 | 11.95 | 0.03 | 7.5 | 92.2 | 0.4 | -1.00 | 0.75 | 0.46 | -0.02 | 4.1 | 0.003 | 0.81 | 0.0 | 0.05 | 16.81 | 0.00 | 2.062 | 22.18 | 0.29 | 8.3 | 91.3 | 0.3 | -1.77 | 2.23 | 0.83 | 0.71 | 0.44 | 33581 | 4192 | 18 | 45 | 2 | 0 | 0 | logfile |
✔ | 7D58 | 30577 | 2022-12-20 | 2020-09-25 | 2.9 | 3.51 | — | 5.3 | 0.002 | 0.66 | 0.0 | 0.54 | 13.94 | 0.00 | 2.139 | 8.59 | 0.09 | 5.8 | 94.2 | 0.0 | -3.64 | 0.55 | 0.24 | -0.02 | 3.3 | 0.006 | 1.28 | 0.0 | 0.17 | 17.94 | 0.01 | 2.058 | 17.76 | 2.68 | 6.6 | 93.4 | 0.0 | -1.88 | 2.22 | 0.79 | 0.78 | 1.00 | 40568 | 4980 | 26 | 46 | 8 | 0 | 0 | logfile |