Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GWG	34312	2023-04-26	2022-09-17	3.37	3.96	3.48	7.9	0.009	0.94	5.0	0.06	17.82	0.01	2.045	13.54	5.14	8.4	91.2	0.4	-1.94	0.59	0.16	-0.05	3.5	0.004	0.85	0.0	0.04	17.35	0.01	2.073	20.41	0.70	8.6	91.2	0.2	-2.15	1.82	0.77	0.63	0.57	21955	2668	13	52	9	1	0	logfile
✔	6SXA	10337	2023-04-20	2019-09-25	3.6	5.82	4.21	4.6	0.010	1.37	5.0	0.09	15.20	0.01	2.245	15.25	3.18	10.9	88.9	0.2	-4.66	0.83	0.67	-0.05	4.6	0.003	0.83	0.0	0.04	15.04	0.00	2.240	11.90	0.00	6.0	93.9	0.1	-0.30	1.73	0.91	0.85	0.41	7014	943	2	0	0	0	0	logfile
✔	7NZM	12665	2023-04-21	2021-03-24	3.96	6.56	4.22	4.2	0.007	1.12	0.0	0.06	13.94	0.01	1.774	11.10	0.00	3.8	96.2	0.0	-1.56	0.77	0.51	-0.04	4.3	0.003	0.74	0.0	0.04	15.04	0.00	2.061	18.47	0.21	2.9	97.1	0.0	0.28	1.50	0.94	0.84	0.28	9109	1157	8	0	4	0	0	logfile
✔	5VZL	8749	2023-04-23	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	14.28	0.01	2.216	7.72	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	17.0	0.002	0.64	0.0	0.04	15.49	0.00	1.241	12.10	0.08	5.0	95.0	0.0	-1.15	1.21	0.38	0.18	0.61	13915	1451	3	115	1	0	0	logfile
✔	8HAo	34598	2023-04-24	2022-10-26	3.76	3.06	3.49	3.8	0.003	0.50	0.0	0.04	15.90	0.00	1.785	5.73	0.40	2.9	96.9	0.2	1.91	0.58	0.52	-0.03	3.8	0.004	0.87	0.0	0.05	17.30	0.00	2.050	18.94	0.80	4.4	95.6	0.1	0.27	1.23	0.65	0.69	0.83	18479	2314	12	0	0	0	0	logfile
✔	7Q1Z	13776	2023-04-26	2021-10-22	3.4	2.41	—	4.0	0.004	0.61	0.0	0.04	12.71	0.00	2.074	6.27	0.04	2.2	97.8	0.0	0.60	0.48	0.31	-0.02	2.1	0.006	0.85	0.0	0.05	15.89	0.01	2.073	12.66	0.94	4.4	95.6	0.0	-0.31	1.64	0.75	0.76	1.74	23694	2916	21	0	63	0	0	logfile
✔	3J7A	2660	2023-04-26	2014-06-03	3.2	3.24	3.33	3.2	0.008	1.39	49.0	0.10	19.81	0.01	1.715	4.56	15.41	10.5	85.4	4.2	-2.49	0.31	0.55	-0.02	3.2	0.003	0.70	0.0	0.04	18.04	0.01	1.866	17.03	1.05	8.0	90.8	1.2	-1.89	2.71	0.40	0.77	1.02	68866	4106	35	1682	69	0	0	logfile
✔	6RWE	10038	2023-04-20	2019-06-04	3.0	3.12	—	3.7	0.009	1.02	1.0	0.06	13.12	0.01	1.975	6.33	0.73	7.4	92.5	0.1	-4.84	0.44	0.32	0.00	3.1	0.008	1.06	0.0	0.06	18.26	0.01	1.845	18.12	2.92	7.6	92.3	0.0	-2.05	2.44	0.76	0.81	1.72	53719	6454	26	95	8	0	0	logfile
✔	6CRZ	7577	2023-04-27	2018-03-19	3.3	3.42	3.35	4.5	0.007	1.01	0.0	0.06	9.26	0.01	2.254	6.77	0.04	7.8	92.2	0.0	-4.10	0.39	0.17	0.01	3.3	0.004	0.75	0.0	0.05	13.80	0.00	2.093	12.74	0.58	6.4	93.6	0.0	-1.78	1.50	0.62	0.59	0.81	25909	3205	25	0	66	0	0	logfile
✔	6QYM	4679	2023-04-28	2019-03-09	3.6	3.25	—	4.0	0.007	0.89	0.0	0.05	9.66	0.01	2.201	8.77	0.00	6.5	93.5	0.0	-4.63	0.62	0.60	0.02	3.5	0.005	0.95	0.0	0.05	17.36	0.00	2.072	29.90	1.38	5.4	94.6	0.0	-0.66	2.36	0.69	0.67	-0.16	26880	3360	12	0	0	0	0	logfile
✔	6XSS	22305	2023-04-20	2020-07-16	3.7	3.37	—	3.3	0.003	0.63	0.0	0.04	12.31	0.00	1.843	28.34	0.00	2.5	97.5	0.0	-0.32	0.74	0.78	0.04	3.3	0.003	0.80	0.0	0.04	16.96	0.00	2.251	16.62	0.49	0.9	99.1	0.0	2.42	1.33	0.74	0.79	0.26	8048	1040	4	0	0	0	0	logfile
✔	6oiG	20077	2023-04-26	2019-04-09	3.8	5.08	—	5.0	0.011	1.45	2.0	0.07	19.62	0.01	0.087	53.69	1.20	15.9	83.9	0.2	-5.09	0.77	0.48	0.04	4.9	0.010	1.00	6.0	0.05	18.66	0.01	1.416	32.12	0.74	13.7	86.2	0.1	-2.80	3.10	0.89	0.86	0.08	129140	6757	48	3522	116	0	0	logfile
✔	7S8V	24927	2023-04-22	2021-09-20	3.73	4.42	—	3.9	0.004	0.65	0.0	0.09	12.46	0.00	2.098	5.61	0.14	7.0	93.0	0.0	-3.48	0.68	0.64	0.04	3.9	0.003	0.68	0.0	0.04	14.49	0.00	1.955	15.73	0.00	9.4	90.6	0.0	-2.21	1.59	0.70	0.71	0.69	12502	782	7	0	12	0	6045	logfile
✔	6J5T	0680	2023-04-19	2019-01-12	3.4	3.94	—	3.0	0.011	1.21	0.0	0.07	12.81	0.02	2.233	7.03	0.59	11.3	88.4	0.3	-4.25	0.83	0.67	0.05	3.0	0.006	1.05	0.0	0.05	15.84	0.01	2.050	24.51	0.76	11.3	88.5	0.2	-1.87	1.35	0.91	0.85	1.27	53488	6640	25	0	15	0	0	logfile
✔	6Q2o	20576	2023-04-23	2019-08-08	3.65	3.77	—	3.9	0.004	0.79	0.0	0.05	8.40	0.01	1.534	3.25	0.12	5.6	94.4	0.0	-3.75	0.48	0.23	0.05	3.6	0.006	0.95	0.0	0.05	15.06	0.01	2.101	21.20	0.78	9.2	90.8	0.1	-2.53	1.99	0.69	0.66	0.60	15196	1900	8	0	20	0	0	logfile
✔	6NEQ	9358	2023-04-23	2018-12-18	3.32	3.85	—	3.5	0.001	0.37	0.0	0.03	12.81	0.00	1.949	3.29	0.35	10.3	88.1	1.6	-2.42	0.69	0.51	0.07	3.5	0.004	0.68	0.0	0.04	16.33	0.00	2.089	13.57	0.39	5.4	94.5	0.1	-0.36	2.01	0.85	0.85	1.39	65776	5509	32	952	147	0	0	logfile
✘	6QoZ	4610	2023-04-24	2019-02-13	3.4	3.65	3.13	3.5	0.011	1.46	4.0	0.09	15.40	0.01	1.243	4.20	5.13	6.0	93.1	0.9	-3.28	0.40	0.62	0.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17987	2307	9	0	0	0	0	logfile
✔	6QS6	4624	2023-04-29	2019-02-20	3.9	4.03	2.44	4.0	0.011	1.09	0.0	0.06	10.53	0.01	2.187	6.85	0.07	8.2	91.8	0.0	-4.07	0.57	0.46	0.09	3.9	0.003	0.80	0.0	0.05	16.46	0.00	1.964	18.64	0.47	5.7	94.3	0.0	-0.45	1.40	0.74	0.77	0.63	28557	3568	13	0	35	0	0	logfile
✔	7EGC	31112	2023-04-21	2021-03-24	3.9	3.72	—	4.9	0.008	1.13	76.0	0.08	15.43	0.01	1.402	24.31	3.39	7.3	91.9	0.8	-3.59	0.43	0.10	0.10	3.1	0.004	0.81	0.0	0.05	16.66	0.00	1.986	17.27	0.40	6.5	93.4	0.2	-0.77	1.26	0.51	0.32	0.51	113129	13879	63	142	18	0	0	logfile
✔	5ZYA	6915	2023-04-24	2018-05-23	3.95	4.18	—	4.1	0.009	1.35	0.0	0.16	11.24	0.01	1.673	8.53	0.32	9.6	90.4	0.0	-4.57	0.67	0.52	0.10	4.0	0.004	0.93	0.0	0.06	15.44	0.00	2.070	18.03	0.70	7.4	92.6	0.0	-1.92	1.82	0.77	0.72	0.97	16957	2143	7	0	5	0	0	logfile

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