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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3JAE | 6345 | 2023-12-10 | 2015-06-08 | 3.9 | 2.88 | — | 3.5 | 0.006 | 1.26 | 0.0 | 0.05 | 9.72 | 0.01 | 2.202 | 13.69 | 0.00 | 0.9 | 99.1 | 0.0 | -1.69 | 0.70 | 0.74 | 1.87 | 3.2 | 0.003 | 0.87 | 0.0 | 0.04 | 13.58 | 0.00 | 2.154 | 15.18 | 0.33 | 2.6 | 97.4 | 0.0 | 0.11 | 1.49 | 0.72 | 0.82 | 1.55 | 12825 | 1690 | 10 | 0 | 10 | 0 | 0 | logfile |
✘ | 3JAF | 6346 | 2023-12-10 | 2015-06-08 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13865 | 1710 | 15 | 0 | 15 | 0 | 0 | logfile |
✔ | 3JB6 | 6408 | 2023-12-10 | 2015-08-02 | 3.3 | 3.35 | — | 3.4 | 0.010 | 0.90 | 4.0 | 0.06 | 9.55 | 0.01 | 2.123 | 8.29 | 0.20 | 2.4 | 97.4 | 0.1 | -3.72 | 0.63 | 0.90 | 5.02 | 3.4 | 0.002 | 0.58 | 0.0 | 0.04 | 15.12 | 0.00 | 2.150 | 6.05 | 0.13 | 1.9 | 98.1 | 0.0 | 0.06 | 1.20 | 0.62 | 0.88 | 3.70 | 13904 | 1731 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 3JB7 | 6404 | 2023-12-10 | 2015-08-03 | 4.0 | 4.13 | — | 4.1 | 0.007 | 0.76 | 3.0 | 0.05 | 11.60 | 0.00 | 0.793 | 10.58 | 1.13 | 3.9 | 95.9 | 0.2 | -2.17 | 0.76 | 0.85 | — | 4.1 | 0.003 | 0.67 | 0.0 | 0.04 | 15.83 | 0.00 | 2.130 | 11.87 | 0.80 | 2.8 | 97.1 | 0.1 | 0.26 | 0.87 | 0.78 | 0.85 | — | 14176 | 1733 | 8 | 11 | 3 | 0 | 0 | logfile |
✔ | 3JBS | 6478 | 2023-12-07 | 2015-10-13 | 2.9 | 3.04 | — | 3.2 | 0.010 | 1.32 | 0.0 | 0.06 | 8.67 | 0.01 | 2.510 | 0.00 | 0.00 | 2.9 | 97.1 | 0.0 | 0.51 | 0.21 | 0.76 | 4.15 | 3.0 | 0.003 | 0.61 | 0.0 | 0.04 | 18.11 | 0.00 | 2.225 | 5.17 | 3.95 | 1.7 | 98.3 | 0.0 | 0.99 | 1.75 | 0.21 | 0.81 | 3.63 | 1401 | 175 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JC2 | 3245 | 2023-12-07 | 2015-11-15 | 3.6 | 3.58 | 3.97 | 3.7 | 0.012 | 1.63 | 2.0 | 0.08 | 14.90 | 0.01 | 1.175 | 18.51 | 7.32 | 11.5 | 84.5 | 4.0 | -4.52 | 0.22 | 0.59 | 1.48 | 3.6 | 0.004 | 0.86 | 0.0 | 0.04 | 17.18 | 0.00 | 2.128 | 14.33 | 0.49 | 7.4 | 91.9 | 0.6 | -1.41 | 3.32 | 0.24 | 0.53 | 1.66 | 3911 | 482 | 4 | 0 | 32 | 0 | 0 | logfile |
✔ | 3JCA | 6441 | 2023-12-09 | 2015-11-24 | 4.8 | 4.59 | — | 4.5 | 0.012 | 1.49 | 0.0 | 0.07 | 18.84 | 0.01 | 2.370 | 2.63 | 0.00 | 7.2 | 92.8 | 0.0 | -1.87 | 0.75 | 0.75 | — | 4.5 | 0.003 | 0.67 | 0.0 | 0.04 | 19.60 | 0.01 | 2.024 | 17.70 | 0.19 | 5.7 | 94.3 | 0.0 | -0.42 | 2.48 | 0.76 | 0.77 | — | 11466 | 1226 | 16 | 80 | 4 | 0 | 0 | logfile |
✔ | 3JCF | 6551 | 2023-12-10 | 2015-12-11 | 3.8 | 4.02 | — | 3.9 | 0.004 | 1.03 | 0.0 | 0.04 | 6.81 | 0.00 | 2.057 | 8.41 | 0.00 | 4.6 | 95.4 | 0.0 | -1.63 | 0.74 | 0.81 | 2.11 | 3.9 | 0.003 | 0.67 | 0.0 | 0.04 | 12.60 | 0.00 | 1.983 | 12.49 | 0.06 | 3.4 | 96.6 | 0.0 | 1.84 | 0.69 | 0.75 | 0.85 | 1.65 | 14228 | 1745 | 10 | 0 | 13 | 0 | 0 | logfile |
✔ | 3JCS | 6583 | 2023-12-09 | 2016-01-21 | 2.8 | 3.07 | — | 3.0 | 0.009 | 0.98 | 1.0 | 0.05 | 24.41 | 0.03 | 1.093 | 24.89 | 1.41 | 11.8 | 88.0 | 0.2 | -5.35 | 0.72 | 0.78 | 3.98 | 3.0 | 0.007 | 0.88 | 0.0 | 0.04 | 24.23 | 0.01 | 1.866 | 17.67 | 3.28 | 9.9 | 90.0 | 0.1 | -2.48 | 0.54 | 0.70 | 0.80 | 2.75 | 117257 | 5847 | 74 | 3420 | 109 | 144 | 0 | logfile |
✔ | 3JD8 | 6640 | 2023-12-09 | 2016-05-01 | 4.43 | 4.58 | — | 4.4 | 0.015 | 1.56 | 5.0 | 0.13 | 16.23 | 0.02 | 1.335 | 78.13 | 11.82 | 11.9 | 79.7 | 8.4 | -3.27 | 0.54 | 0.62 | — | 4.4 | 0.004 | 0.90 | 0.0 | 0.05 | 12.25 | 0.00 | 2.047 | 18.43 | 0.00 | 7.5 | 91.6 | 0.9 | -0.57 | 1.16 | 0.57 | 0.73 | — | 8050 | 1133 | 7 | 0 | 25 | 0 | 0 | logfile |
✔ | 3KTT | 5148 | 2023-12-07 | 2009-11-25 | 4.0 | 2.33 | — | 4.5 | 0.020 | 2.86 | 20.0 | 0.20 | 15.20 | 0.01 | 1.652 | 179.94 | 7.82 | 6.3 | 89.4 | 4.3 | -0.59 | 0.27 | 0.28 | — | 1.6 | 0.005 | 1.21 | 0.0 | 0.05 | 17.07 | 0.01 | 2.016 | 34.63 | 0.49 | 11.5 | 87.3 | 1.2 | -2.51 | 2.08 | 0.31 | 0.43 | — | 3855 | 513 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 3LoS | 5137 | 2023-12-09 | 2010-02-04 | 4.3 | 2.98 | — | 3.0 | 0.008 | 2.44 | 224.0 | 0.19 | 19.87 | 0.01 | 2.259 | 87.93 | 23.89 | 17.4 | 68.9 | 13.8 | -6.57 | 0.57 | 0.49 | — | 3.2 | 0.004 | 1.16 | 0.0 | 0.05 | 15.91 | 0.01 | 2.171 | 27.07 | 0.03 | 20.2 | 75.7 | 4.1 | -4.25 | 1.37 | 0.62 | 0.54 | — | 63712 | 8512 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 4CE4 | 2490 | 2023-12-09 | 2013-11-08 | 4.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65473 | 3572 | 40 | 1437 | 984 | 0 | 0 | logfile |
✔ | 4Ui9 | 2924 | 2023-12-10 | 2015-03-27 | 3.6 | 3.87 | — | 3.6 | 0.016 | 1.97 | 124.0 | 0.11 | 17.96 | 0.01 | 0.849 | 19.88 | 11.86 | 5.3 | 92.8 | 1.9 | -1.90 | 0.85 | 0.73 | 1.60 | 3.6 | 0.003 | 0.81 | 0.0 | 0.04 | 17.07 | 0.00 | 2.102 | 15.06 | 0.42 | 5.4 | 94.2 | 0.4 | 0.87 | 3.18 | 0.89 | 0.83 | 1.17 | 66453 | 8472 | 25 | 0 | 5 | 0 | 0 | logfile |
✔ | 4UiS | 2974 | 2023-12-09 | 2015-04-03 | 4.4 | 4.48 | — | 4.4 | 0.009 | 1.29 | 0.0 | 0.06 | 9.92 | 0.01 | 1.546 | 24.94 | 1.19 | 7.7 | 87.4 | 5.0 | -2.00 | 0.50 | 0.56 | — | 4.4 | 0.004 | 0.80 | 0.0 | 0.04 | 11.88 | 0.00 | 2.133 | 16.76 | 0.00 | 9.9 | 88.9 | 1.2 | -1.58 | 1.65 | 0.55 | 0.73 | — | 8518 | 791 | 5 | 0 | 458 | 0 | 0 | logfile |
✔ | 4V91 | 2599 | 2023-12-11 | 2014-03-21 | 3.7 | 3.84 | — | 3.8 | 0.133 | 4.77 | 525.0 | 0.43 | 24.78 | 0.07 | 0.695 | 17.94 | 12.79 | 14.1 | 78.2 | 7.8 | -5.39 | 0.33 | 0.36 | 0.15 | 3.8 | 0.036 | 1.48 | 0.0 | 0.04 | 22.24 | 0.02 | 2.008 | 17.16 | 1.21 | 8.6 | 90.7 | 0.7 | -2.77 | 2.00 | 0.62 | 0.81 | 1.39 | 125665 | 6450 | 45 | 3482 | 0 | 0 | 0 | logfile |
✔ | 5A63 | 3061 | 2023-12-09 | 2015-06-24 | 3.4 | 3.50 | 3.42 | 3.5 | 0.010 | 1.69 | 8.0 | 0.11 | 19.34 | 0.01 | 2.079 | 39.51 | 13.74 | 6.4 | 91.5 | 2.1 | -0.17 | 0.36 | 0.40 | 2.09 | 3.5 | 0.003 | 0.75 | 0.0 | 0.04 | 17.17 | 0.00 | 2.165 | 12.29 | 0.76 | 5.5 | 94.2 | 0.3 | 0.00 | 3.24 | 0.63 | 0.82 | 1.89 | 10003 | 1223 | 13 | 0 | 22 | 0 | 0 | logfile |
✔ | 5A6E | 3062 | 2023-12-09 | 2015-06-25 | 4.5 | 6.76 | — | 5.1 | 0.010 | 3.73 | 0.0 | 0.05 | 15.55 | 0.01 | 2.112 | 8.77 | 3.19 | 11.1 | 88.8 | 0.2 | -5.00 | 0.36 | 0.56 | — | 4.8 | 0.003 | 0.57 | 0.0 | 0.03 | 10.49 | 0.00 | 2.035 | 10.98 | 0.00 | 5.0 | 95.0 | 0.0 | -0.56 | 1.47 | 0.40 | 0.73 | — | 11093 | 634 | 4 | 0 | 182 | 0 | 5102 | logfile |
✔ | 5A6F | 3063 | 2023-12-08 | 2015-06-25 | 4.2 | 5.75 | — | 5.0 | 0.012 | 1.50 | 0.0 | 0.05 | 12.32 | 0.01 | 2.112 | 10.08 | 3.74 | 12.2 | 87.6 | 0.2 | -4.94 | 0.56 | 0.74 | — | 4.7 | 0.002 | 0.57 | 0.0 | 0.04 | 11.01 | 0.00 | 1.975 | 11.65 | 0.00 | 5.8 | 94.2 | 0.0 | -0.93 | 1.02 | 0.57 | 0.75 | — | 8881 | 540 | 2 | 0 | 43 | 0 | 4330 | logfile |
✘ | 5A7U | 3079 | 2023-12-07 | 2015-07-10 | 4.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 455 | 27 | 1 | 0 | 1 | 0 | 231 | logfile |