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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7PQU | 13605 | 2024-03-15 | 2021-09-20 | 3.03 | 1.80 | — | 3.4 | 0.008 | 0.90 | 0.0 | 0.05 | 17.24 | 0.01 | 0.051 | 14.73 | 5.14 | 7.9 | 92.0 | 0.1 | -3.95 | 0.77 | 0.80 | 2.84 | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 16.70 | 0.01 | 2.236 | 9.43 | 3.37 | 5.7 | 94.3 | 0.0 | -0.55 | 0.99 | 0.76 | 0.79 | 2.34 | 10798 | 1312 | 12 | 0 | 8 | 14 | 0 | logfile |
✘ | 8BQW | 16189 | 2024-03-17 | 2023-01-18 | 2.3 | 2.12 | 2.14 | 2.2 | 0.008 | 1.14 | 0.0 | 0.07 | 8.96 | 0.00 | 0.052 | 12.77 | 0.00 | 9.6 | 90.4 | 0.0 | -3.78 | 0.46 | 0.75 | 7.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17385 | 2310 | 90 | 0 | 270 | 135 | 0 | logfile |
✘ | 7o1C | 12695 | 2024-03-24 | 2021-03-29 | 2.6 | 3.02 | 2.70 | 2.4 | 0.018 | 1.90 | 0.0 | 0.06 | 22.52 | 0.02 | 0.055 | 6.76 | 0.04 | 5.1 | 94.8 | 0.1 | -1.96 | 0.80 | 0.83 | 3.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 148175 | 6042 | 76 | 4638 | 489 | 800 | 0 | logfile |
✔ | 7Q4K | 13805 | 2024-03-23 | 2021-10-31 | 3.0 | 3.23 | — | 3.1 | 0.015 | 1.62 | 2.0 | 0.08 | 22.77 | 0.02 | 0.056 | 3.83 | 0.63 | 4.5 | 95.4 | 0.1 | -3.83 | 0.77 | 0.82 | 2.32 | 3.1 | 0.003 | 0.66 | 0.0 | 0.04 | 22.74 | 0.01 | 1.812 | 8.10 | 3.51 | 3.6 | 96.4 | 0.1 | -0.68 | 1.12 | 0.81 | 0.89 | 2.44 | 146607 | 5682 | 73 | 4711 | 173 | 800 | 0 | logfile |
✘ | 7EPP | 31248 | 2024-03-17 | 2021-04-27 | 2.4 | 2.51 | — | 2.6 | 0.004 | 0.67 | 0.0 | 0.04 | 16.13 | 0.01 | 0.073 | 3.24 | 3.57 | 7.3 | 92.7 | 0.0 | -2.99 | 0.64 | 0.81 | 3.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 80520 | 10020 | 60 | 0 | 0 | 1800 | 0 | logfile |
✔ | 6oiG | 20077 | 2024-03-15 | 2019-04-09 | 3.8 | 5.08 | — | 5.0 | 0.011 | 1.45 | 2.0 | 0.07 | 24.98 | 0.01 | 0.087 | 53.69 | 1.20 | 15.9 | 83.9 | 0.2 | -5.09 | 0.77 | 0.48 | 0.04 | 4.9 | 0.011 | 1.05 | 7.0 | 0.05 | 23.88 | 0.01 | 1.454 | 34.94 | 4.82 | 13.3 | 86.6 | 0.1 | -2.73 | 3.09 | 0.89 | 0.86 | 0.13 | 129140 | 6757 | 48 | 3522 | 116 | 0 | 0 | logfile |
✔ | 5Li4 | 4052 | 2024-03-18 | 2016-07-14 | 4.2 | 5.13 | — | 4.0 | 0.053 | 3.07 | 114.0 | 0.34 | 14.44 | 0.02 | 0.111 | 93.07 | 2.94 | 14.0 | 79.1 | 6.9 | -4.32 | 0.24 | 0.30 | — | 4.1 | 0.005 | 1.06 | 2.0 | 0.05 | 13.91 | 0.01 | 2.083 | 35.87 | 0.00 | 16.6 | 82.5 | 0.9 | -3.94 | 4.20 | 0.34 | 0.59 | — | 20070 | 2562 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XDi | 33148 | 2024-03-10 | 2022-03-27 | 3.8 | 3.93 | 3.63 | 3.9 | 0.003 | 0.71 | 0.0 | 0.04 | 16.85 | 0.01 | 0.137 | 25.89 | 0.56 | 4.7 | 94.6 | 0.6 | 0.46 | 0.58 | 0.82 | 1.80 | 3.9 | 0.005 | 0.86 | 2.0 | 0.05 | 17.46 | 0.01 | 2.086 | 15.71 | 6.42 | 5.4 | 94.0 | 0.6 | 0.77 | 1.34 | 0.58 | 0.82 | 1.67 | 53669 | 6804 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Z4F | 14495 | 2024-03-02 | 2022-03-03 | 4.2 | 4.06 | 5.31 | 3.9 | 0.006 | 0.83 | 24.0 | 0.05 | 14.46 | 0.01 | 0.140 | 45.30 | 0.97 | 8.4 | 90.6 | 0.9 | -2.35 | 0.75 | 0.63 | — | 3.9 | 0.014 | 0.90 | 2.0 | 0.05 | 14.35 | 0.01 | 2.023 | 30.18 | 0.00 | 13.1 | 86.3 | 0.6 | -2.61 | 1.00 | 0.77 | 0.72 | — | 154392 | 21600 | 66 | 0 | 0 | 0 | 0 | logfile |
✔ | 7AQD | 11864 | 2024-03-19 | 2020-10-21 | 3.1 | 3.48 | — | 3.2 | 0.005 | 1.09 | 11.0 | 0.05 | 23.95 | 0.01 | 0.152 | 6.41 | 1.12 | 5.2 | 94.5 | 0.3 | -2.11 | 0.78 | 0.72 | 1.63 | 3.2 | 0.009 | 0.76 | 0.0 | 0.04 | 24.09 | 0.01 | 1.850 | 15.65 | 4.02 | 7.4 | 92.5 | 0.1 | -1.30 | 2.50 | 0.90 | 0.90 | 1.90 | 94357 | 3543 | 32 | 3106 | 0 | 0 | 0 | logfile |
✔ | 6o9J | 0661 | 2024-03-20 | 2019-03-14 | 3.9 | 3.92 | — | 3.9 | 0.006 | 1.25 | 25.0 | 0.10 | 24.37 | 0.01 | 0.154 | 55.29 | 23.17 | 26.6 | 58.7 | 14.7 | -7.10 | 0.74 | 0.66 | 0.16 | 3.9 | 0.011 | 1.15 | 6.0 | 0.05 | 24.09 | 0.01 | 1.282 | 34.98 | 8.65 | 25.0 | 72.2 | 2.9 | -4.91 | 1.31 | 0.80 | 0.77 | 0.18 | 142682 | 5731 | 53 | 4564 | 0 | 0 | 0 | logfile |
✘ | 3JC7 | 6536 | 2024-03-24 | 2015-11-24 | 4.8 | 5.23 | — | 4.8 | 0.009 | 1.57 | 7.0 | 0.07 | 12.16 | 0.01 | 0.163 | 42.92 | 0.45 | 8.5 | 90.1 | 1.3 | -4.10 | 0.75 | 0.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40298 | 5075 | 12 | 0 | 1 | 0 | 0 | logfile |
✔ | 6XZB | 10657 | 2024-03-22 | 2020-02-03 | 2.54 | 3.99 | — | 3.8 | 0.008 | 0.64 | 1.0 | 0.04 | 23.12 | 0.02 | 0.178 | 7.02 | 2.93 | 3.1 | 96.4 | 0.4 | -1.96 | 0.75 | 0.71 | 2.59 | 3.8 | 0.004 | 0.72 | 0.0 | 0.04 | 22.95 | 0.01 | 1.354 | 12.85 | 5.82 | 3.8 | 96.1 | 0.1 | -0.10 | 1.05 | 0.72 | 0.86 | 1.95 | 145650 | 5732 | 55 | 4692 | 1 | 0 | 0 | logfile |
✔ | 5M32 | 4146 | 2024-03-17 | 2016-10-14 | 3.8 | 3.96 | — | 3.8 | 0.009 | 1.47 | 12.0 | 0.07 | 13.19 | 0.01 | 0.185 | 19.65 | 3.10 | 14.4 | 83.9 | 1.7 | -5.42 | 0.81 | 0.79 | 1.92 | 3.8 | 0.003 | 0.83 | 0.0 | 0.04 | 14.85 | 0.00 | 1.829 | 15.52 | 3.37 | 10.5 | 89.2 | 0.3 | -1.92 | 1.49 | 0.83 | 0.81 | 1.31 | 76085 | 10500 | 52 | 0 | 8 | 0 | 0 | logfile |
✔ | 6Y7C | 10713 | 2024-03-17 | 2020-02-28 | 3.8 | 5.42 | 3.84 | 2.8 | 0.015 | 1.46 | 1.0 | 0.06 | 23.24 | 0.01 | 0.193 | 10.34 | 1.00 | 14.3 | 85.4 | 0.3 | -5.44 | 0.89 | 0.71 | 0.41 | 2.7 | 0.011 | 0.81 | 1.0 | 0.04 | 22.83 | 0.01 | 2.021 | 23.71 | 2.06 | 12.7 | 87.2 | 0.1 | -3.39 | 2.54 | 0.91 | 0.77 | 0.35 | 79690 | 5381 | 34 | 1735 | 0 | 0 | 0 | logfile |
✔ | 7QGH | 13955 | 2024-03-24 | 2021-12-08 | 4.48 | 9.26 | — | 4.8 | 0.016 | 1.62 | 58.0 | 0.11 | 22.93 | 0.01 | 0.197 | 5.44 | 1.41 | 8.8 | 90.2 | 1.0 | -4.05 | 0.66 | 0.38 | — | 4.5 | 0.003 | 0.69 | 0.0 | 0.04 | 24.19 | 0.01 | 1.599 | 34.20 | 0.02 | 8.8 | 91.1 | 0.1 | -2.08 | 2.07 | 0.85 | 0.77 | — | 147973 | 6046 | 58 | 4716 | 3 | 9 | 0 | logfile |
✔ | 6FKi | 4272 | 2024-03-24 | 2018-01-24 | 4.3 | 4.39 | 4.31 | 4.3 | 0.015 | 1.42 | 28.0 | 0.09 | 12.07 | 0.01 | 0.201 | 58.71 | 0.15 | 3.9 | 96.0 | 0.1 | -0.17 | 0.63 | 0.65 | — | 4.3 | 0.006 | 0.90 | 10.0 | 0.06 | 13.74 | 0.01 | 1.416 | 23.83 | 0.02 | 4.4 | 95.5 | 0.1 | -0.22 | 1.25 | 0.69 | 0.78 | — | 39231 | 5201 | 31 | 0 | 10 | 0 | 0 | logfile |
✔ | 5ND1 | 3619 | 2024-03-16 | 2017-03-07 | 3.7 | 3.86 | — | 3.9 | 0.017 | 2.27 | 54.0 | 0.15 | 22.44 | 0.01 | 0.204 | 100.40 | 32.66 | 7.8 | 89.7 | 2.5 | -2.95 | 0.47 | 0.82 | 1.08 | 3.9 | 0.005 | 0.84 | 0.0 | 0.05 | 18.47 | 0.00 | 2.069 | 15.66 | 9.47 | 10.2 | 89.3 | 0.5 | -2.20 | 0.81 | 0.49 | 0.84 | 0.92 | 14963 | 1977 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K3V | 22657 | 2024-03-23 | 2020-09-14 | 1.34 | 1.44 | — | 1.4 | 0.005 | 0.79 | 0.0 | 0.04 | 21.25 | 0.00 | 0.211 | 2.71 | 0.00 | 1.2 | 98.8 | 0.0 | 3.60 | 0.69 | 0.78 | 8.90 | 1.4 | 0.004 | 0.68 | 0.0 | 0.04 | 14.91 | 0.00 | 1.994 | 2.07 | 0.00 | 1.2 | 98.8 | 0.0 | 4.00 | 0.37 | 0.73 | 0.83 | 8.88 | 38406 | 4128 | 72 | 0 | 334 | 2672 | 0 | logfile |
✔ | 3J9S | 6272 | 2024-03-14 | 2015-02-19 | 2.6 | 3.83 | — | 3.5 | 0.020 | 1.80 | 0.0 | 0.12 | 18.55 | 0.01 | 0.216 | 25.10 | 6.86 | 1.3 | 98.0 | 0.8 | 1.97 | 0.68 | 0.76 | 3.15 | 3.5 | 0.004 | 0.64 | 0.0 | 0.04 | 17.28 | 0.00 | 1.101 | 8.83 | 1.33 | 1.7 | 98.3 | 0.0 | 1.27 | 1.90 | 0.70 | 0.89 | 3.32 | 9813 | 1191 | 3 | 0 | 15 | 315 | 0 | logfile |