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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5o09 | 3726 | 2023-11-16 | 2017-05-16 | 3.6 | 3.66 | — | 3.7 | 0.014 | 1.48 | 32.0 | 0.10 | 13.27 | 0.01 | 0.180 | 18.46 | 1.36 | 6.3 | 92.8 | 0.8 | -4.52 | 0.53 | 0.60 | 0.71 | 3.6 | 0.007 | 0.89 | 0.0 | 0.05 | 16.94 | 0.01 | 2.078 | 24.00 | 0.91 | 7.3 | 92.7 | 0.0 | -1.27 | 1.65 | 0.61 | 0.77 | 1.45 | 67424 | 8648 | 40 | 16 | 0 | 0 | 0 | logfile |
✔ | 5M32 | 4146 | 2023-11-19 | 2016-10-14 | 3.8 | 3.96 | — | 3.8 | 0.009 | 1.47 | 12.0 | 0.07 | 13.19 | 0.01 | 0.185 | 19.65 | 3.10 | 14.4 | 83.9 | 1.7 | -5.42 | 0.81 | 0.79 | 1.92 | 3.8 | 0.003 | 0.83 | 0.0 | 0.05 | 14.71 | 0.00 | 1.504 | 15.88 | 0.44 | 11.4 | 88.3 | 0.3 | -1.95 | 1.49 | 0.83 | 0.81 | 1.30 | 76085 | 10500 | 52 | 0 | 8 | 0 | 0 | logfile |
✔ | 6Y7C | 10713 | 2023-11-19 | 2020-02-28 | 3.8 | 5.42 | 3.84 | 2.8 | 0.015 | 1.44 | 1.0 | 0.06 | 18.67 | 0.02 | 0.193 | 10.34 | 1.00 | 14.3 | 85.4 | 0.3 | -5.44 | 0.89 | 0.71 | 0.41 | 2.6 | 0.012 | 0.94 | 0.0 | 0.04 | 18.86 | 0.01 | 1.979 | 35.86 | 0.39 | 15.2 | 84.6 | 0.1 | -3.68 | 2.59 | 0.92 | 0.79 | 0.33 | 79690 | 5381 | 34 | 1735 | 0 | 0 | 0 | logfile |
✔ | 5ND1 | 3619 | 2023-11-16 | 2017-03-07 | 3.7 | 3.86 | — | 3.9 | 0.017 | 2.27 | 54.0 | 0.15 | 22.44 | 0.01 | 0.204 | 100.40 | 32.66 | 7.8 | 89.7 | 2.5 | -2.95 | 0.47 | 0.82 | 1.08 | 3.9 | 0.005 | 0.84 | 0.0 | 0.04 | 18.26 | 0.00 | 2.091 | 15.15 | 0.95 | 9.3 | 90.2 | 0.5 | -1.95 | 1.59 | 0.48 | 0.83 | 1.01 | 14963 | 1977 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9S | 6272 | 2023-11-14 | 2015-02-19 | 2.6 | 3.83 | — | 3.5 | 0.020 | 1.80 | 0.0 | 0.12 | 18.55 | 0.01 | 0.216 | 25.10 | 6.86 | 1.3 | 98.0 | 0.8 | 1.97 | 0.68 | 0.76 | 3.15 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 17.43 | 0.00 | 1.145 | 9.20 | 1.43 | 1.5 | 98.5 | 0.0 | 1.37 | 1.90 | 0.70 | 0.89 | 3.19 | 9813 | 1191 | 3 | 0 | 15 | 315 | 0 | logfile |
✘ | 5UCY | 8539 | 2023-11-19 | 2016-12-22 | 4.6 | 4.99 | — | 4.6 | 0.011 | 1.21 | 3.0 | 0.06 | 13.21 | 0.01 | 0.244 | 89.25 | 0.68 | 11.3 | 88.3 | 0.5 | -4.47 | 0.50 | 0.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24990 | 2610 | 12 | 3 | 6 | 0 | 4452 | logfile |
✔ | 6V4J | 21041 | 2023-11-19 | 2019-11-27 | 2.97 | 2.66 | — | 2.6 | 0.010 | 1.79 | 8.0 | 0.09 | 13.20 | 0.01 | 0.244 | 16.47 | 5.36 | 4.0 | 95.7 | 0.3 | -0.54 | 0.47 | 0.48 | 1.90 | 2.6 | 0.003 | 0.81 | 0.0 | 0.04 | 16.33 | 0.00 | 2.100 | 13.99 | 3.48 | 4.6 | 95.4 | 0.0 | -1.07 | 1.53 | 0.48 | 0.50 | 1.34 | 20637 | 2697 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZXD | 11517 | 2023-11-19 | 2020-07-29 | 3.2 | 3.08 | 3.17 | 3.1 | 0.007 | 0.94 | 0.0 | 0.05 | 16.74 | 0.01 | 0.254 | 5.75 | 0.21 | 7.2 | 92.6 | 0.2 | -3.93 | 0.76 | 0.76 | 2.67 | 3.1 | 0.004 | 0.66 | 0.0 | 0.04 | 17.03 | 0.00 | 2.038 | 9.02 | 0.28 | 5.2 | 94.7 | 0.1 | -0.95 | 1.17 | 0.77 | 0.79 | 2.11 | 80922 | 5944 | 39 | 1645 | 2 | 0 | 0 | logfile |
✔ | 6CB1 | 7445 | 2023-11-18 | 2018-02-01 | 4.6 | 4.77 | — | 4.6 | 0.006 | 1.02 | 0.0 | 0.06 | 16.94 | 0.00 | 0.266 | 5.97 | 0.00 | 5.0 | 94.8 | 0.1 | -2.68 | 0.66 | 0.49 | — | 4.5 | 0.003 | 0.67 | 0.0 | 0.04 | 17.07 | 0.00 | 2.063 | 16.93 | 0.00 | 7.1 | 92.9 | 0.0 | -0.44 | 1.95 | 0.75 | 0.74 | — | 69945 | 6459 | 42 | 1615 | 694 | 0 | 0 | logfile |
✔ | 8SEW | 40431 | 2023-11-17 | 2023-04-10 | 2.89 | 2.97 | 2.87 | 3.0 | 0.004 | 0.59 | 0.0 | 0.04 | 12.56 | 0.00 | 0.267 | 5.77 | 2.14 | 2.1 | 97.7 | 0.2 | 1.93 | 0.60 | 0.79 | 2.44 | 3.0 | 0.003 | 0.58 | 0.0 | 0.04 | 16.35 | 0.00 | 2.215 | 6.47 | 1.20 | 1.6 | 98.2 | 0.2 | 1.93 | 0.57 | 0.61 | 0.81 | 2.28 | 20716 | 2516 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 5NGM | 3640 | 2023-11-21 | 2017-03-18 | 2.9 | 3.05 | — | 3.0 | 0.006 | 0.86 | 0.0 | 0.05 | 17.23 | 0.01 | 0.270 | 7.58 | 0.81 | 8.3 | 91.7 | 0.0 | -4.79 | 0.70 | 0.72 | 2.80 | 3.0 | 0.010 | 0.89 | 0.0 | 0.05 | 18.17 | 0.01 | 1.796 | 12.91 | 5.17 | 9.8 | 90.2 | 0.0 | -2.43 | 0.68 | 0.79 | 0.87 | 2.48 | 140965 | 5610 | 57 | 4559 | 205 | 0 | 0 | logfile |
✔ | 8EEP | 28054 | 2023-11-14 | 2022-09-07 | 2.2 | 2.31 | 2.33 | 2.3 | 0.004 | 1.00 | 0.0 | 0.71 | 12.36 | 0.00 | 0.286 | 7.98 | 1.59 | 0.0 | 100.0 | 0.0 | 1.98 | 0.74 | 0.81 | 4.21 | 2.3 | 0.030 | 1.63 | 0.0 | 0.12 | 16.78 | 0.01 | 2.001 | 9.57 | 1.36 | 0.6 | 99.4 | 0.0 | 1.73 | 1.37 | 0.74 | 0.81 | 3.61 | 108060 | 13260 | 60 | 0 | 120 | 0 | 0 | logfile |
✘ | 8DMG | 27536 | 2023-11-16 | 2022-07-08 | 4.4 | 5.39 | 4.50 | 4.6 | 0.029 | 2.33 | 20.0 | 0.12 | 16.89 | 0.01 | 0.312 | 28.72 | 6.80 | 6.0 | 92.3 | 1.7 | -2.43 | 0.79 | 0.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16844 | 2068 | 4 | 0 | 18 | 0 | 202 | logfile |
✔ | 8EET | 28057 | 2023-11-13 | 2022-09-07 | 3.1 | 3.36 | 3.21 | 3.4 | 0.007 | 0.92 | 0.0 | 0.06 | 12.28 | 0.00 | 0.312 | 9.93 | 1.07 | 0.5 | 99.5 | 0.0 | 1.87 | 0.72 | 0.82 | 3.55 | 3.4 | 0.037 | 2.69 | 0.0 | 0.32 | 14.46 | 0.00 | 0.378 | 13.19 | 0.11 | 1.1 | 98.9 | 0.0 | 2.07 | 1.31 | 0.68 | 0.83 | 2.96 | 107640 | 13260 | 60 | 0 | 120 | 0 | 0 | logfile |
✔ | 6TA3 | 10421 | 2023-11-14 | 2019-10-29 | 3.8 | 4.18 | — | 3.9 | 0.024 | 2.45 | 4.0 | 0.08 | 18.76 | 0.01 | 0.317 | 210.72 | 16.02 | 0.8 | 99.2 | 0.0 | 1.86 | 0.67 | 0.49 | 0.26 | 4.0 | 0.004 | 0.89 | 0.0 | 0.05 | 17.88 | 0.01 | 1.271 | 29.54 | 0.58 | 3.7 | 96.3 | 0.0 | -0.37 | 2.45 | 0.78 | 0.74 | 0.54 | 9491 | 1201 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 8SPo | 40680 | 2023-11-20 | 2023-05-03 | 2.98 | 2.34 | 3.17 | 2.1 | 0.004 | 0.60 | 0.0 | 0.26 | 16.49 | 0.00 | 0.334 | 11.05 | 0.00 | 6.0 | 94.0 | 0.0 | -1.15 | 0.46 | 0.30 | 0.19 | 1.6 | 0.004 | 0.73 | 0.0 | 0.04 | 18.26 | 0.00 | 1.816 | 13.01 | 2.09 | 6.6 | 93.4 | 0.0 | -1.23 | 1.36 | 0.57 | 0.49 | 1.10 | 31307 | 3428 | 22 | 154 | 6 | 0 | 0 | logfile |
✔ | 6GJ1 | 0009 | 2023-11-15 | 2018-05-15 | 4.7 | 4.83 | — | 4.4 | 0.010 | 1.51 | 5.0 | 0.07 | 11.65 | 0.01 | 0.341 | 23.90 | 0.72 | 18.3 | 81.3 | 0.4 | -5.15 | 0.83 | 0.71 | — | 4.4 | 0.003 | 0.89 | 0.0 | 0.05 | 12.57 | 0.01 | 2.086 | 22.39 | 0.00 | 16.4 | 83.4 | 0.1 | -3.83 | 1.16 | 0.85 | 0.76 | — | 13013 | 1638 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RDB | 4812 | 2023-11-21 | 2019-04-12 | 2.8 | 2.89 | 2.82 | 2.9 | 0.008 | 1.00 | 0.0 | 0.06 | 14.82 | 0.01 | 0.351 | 8.68 | 1.23 | 4.1 | 95.8 | 0.1 | -4.44 | 0.70 | 0.84 | 3.24 | 2.9 | 0.010 | 0.70 | 0.0 | 0.04 | 16.56 | 0.00 | 1.809 | 11.21 | 2.21 | 4.0 | 96.0 | 0.0 | -0.15 | 0.53 | 0.70 | 0.86 | 2.95 | 33961 | 4506 | 31 | 0 | 10 | 40 | 0 | logfile |
✔ | 6SAG | 10130 | 2023-11-13 | 2019-07-16 | 2.0 | 2.11 | 2.01 | 2.1 | 0.004 | 0.65 | 0.0 | 0.04 | 12.99 | 0.00 | 0.351 | 2.79 | 0.00 | 2.6 | 97.4 | 0.0 | -0.33 | 0.58 | 0.86 | 6.64 | 2.1 | 0.004 | 0.66 | 0.0 | 0.04 | 15.32 | 0.01 | 2.026 | 3.22 | 1.43 | 2.9 | 97.1 | 0.0 | 1.37 | 0.73 | 0.60 | 0.90 | 6.95 | 54080 | 6120 | 240 | 120 | 240 | 2840 | 0 | logfile |
✘ | 8EGS | 28129 | 2023-11-20 | 2022-09-13 | 3.92 | 4.06 | 3.83 | 4.0 | 0.003 | 0.57 | 0.0 | 0.04 | 14.97 | 0.00 | 0.357 | 27.78 | 0.35 | 3.7 | 96.3 | 0.0 | -0.21 | 0.78 | 0.80 | 1.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30696 | 3756 | 18 | 0 | 0 | 0 | 0 | logfile |