Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5o09	3726	2023-11-16	2017-05-16	3.6	3.66	—	3.7	0.014	1.48	32.0	0.10	13.27	0.01	0.180	18.46	1.36	6.3	92.8	0.8	-4.52	0.53	0.60	0.71	3.6	0.007	0.89	0.0	0.05	16.94	0.01	2.078	24.00	0.91	7.3	92.7	0.0	-1.27	1.65	0.61	0.77	1.45	67424	8648	40	16	0	0	0	logfile
✔	5M32	4146	2023-11-19	2016-10-14	3.8	3.96	—	3.8	0.009	1.47	12.0	0.07	13.19	0.01	0.185	19.65	3.10	14.4	83.9	1.7	-5.42	0.81	0.79	1.92	3.8	0.003	0.83	0.0	0.05	14.71	0.00	1.504	15.88	0.44	11.4	88.3	0.3	-1.95	1.49	0.83	0.81	1.30	76085	10500	52	0	8	0	0	logfile
✔	6Y7C	10713	2023-11-19	2020-02-28	3.8	5.42	3.84	2.8	0.015	1.44	1.0	0.06	18.67	0.02	0.193	10.34	1.00	14.3	85.4	0.3	-5.44	0.89	0.71	0.41	2.6	0.012	0.94	0.0	0.04	18.86	0.01	1.979	35.86	0.39	15.2	84.6	0.1	-3.68	2.59	0.92	0.79	0.33	79690	5381	34	1735	0	0	0	logfile
✔	5ND1	3619	2023-11-16	2017-03-07	3.7	3.86	—	3.9	0.017	2.27	54.0	0.15	22.44	0.01	0.204	100.40	32.66	7.8	89.7	2.5	-2.95	0.47	0.82	1.08	3.9	0.005	0.84	0.0	0.04	18.26	0.00	2.091	15.15	0.95	9.3	90.2	0.5	-1.95	1.59	0.48	0.83	1.01	14963	1977	2	0	0	0	0	logfile
✔	3J9S	6272	2023-11-14	2015-02-19	2.6	3.83	—	3.5	0.020	1.80	0.0	0.12	18.55	0.01	0.216	25.10	6.86	1.3	98.0	0.8	1.97	0.68	0.76	3.15	3.5	0.003	0.62	0.0	0.04	17.43	0.00	1.145	9.20	1.43	1.5	98.5	0.0	1.37	1.90	0.70	0.89	3.19	9813	1191	3	0	15	315	0	logfile
✘	5UCY	8539	2023-11-19	2016-12-22	4.6	4.99	—	4.6	0.011	1.21	3.0	0.06	13.21	0.01	0.244	89.25	0.68	11.3	88.3	0.5	-4.47	0.50	0.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24990	2610	12	3	6	0	4452	logfile
✔	6V4J	21041	2023-11-19	2019-11-27	2.97	2.66	—	2.6	0.010	1.79	8.0	0.09	13.20	0.01	0.244	16.47	5.36	4.0	95.7	0.3	-0.54	0.47	0.48	1.90	2.6	0.003	0.81	0.0	0.04	16.33	0.00	2.100	13.99	3.48	4.6	95.4	0.0	-1.07	1.53	0.48	0.50	1.34	20637	2697	8	0	0	0	0	logfile
✔	6ZXD	11517	2023-11-19	2020-07-29	3.2	3.08	3.17	3.1	0.007	0.94	0.0	0.05	16.74	0.01	0.254	5.75	0.21	7.2	92.6	0.2	-3.93	0.76	0.76	2.67	3.1	0.004	0.66	0.0	0.04	17.03	0.00	2.038	9.02	0.28	5.2	94.7	0.1	-0.95	1.17	0.77	0.79	2.11	80922	5944	39	1645	2	0	0	logfile
✔	6CB1	7445	2023-11-18	2018-02-01	4.6	4.77	—	4.6	0.006	1.02	0.0	0.06	16.94	0.00	0.266	5.97	0.00	5.0	94.8	0.1	-2.68	0.66	0.49	—	4.5	0.003	0.67	0.0	0.04	17.07	0.00	2.063	16.93	0.00	7.1	92.9	0.0	-0.44	1.95	0.75	0.74	—	69945	6459	42	1615	694	0	0	logfile
✔	8SEW	40431	2023-11-17	2023-04-10	2.89	2.97	2.87	3.0	0.004	0.59	0.0	0.04	12.56	0.00	0.267	5.77	2.14	2.1	97.7	0.2	1.93	0.60	0.79	2.44	3.0	0.003	0.58	0.0	0.04	16.35	0.00	2.215	6.47	1.20	1.6	98.2	0.2	1.93	0.57	0.61	0.81	2.28	20716	2516	8	0	8	0	0	logfile
✔	5NGM	3640	2023-11-21	2017-03-18	2.9	3.05	—	3.0	0.006	0.86	0.0	0.05	17.23	0.01	0.270	7.58	0.81	8.3	91.7	0.0	-4.79	0.70	0.72	2.80	3.0	0.010	0.89	0.0	0.05	18.17	0.01	1.796	12.91	5.17	9.8	90.2	0.0	-2.43	0.68	0.79	0.87	2.48	140965	5610	57	4559	205	0	0	logfile
✔	8EEP	28054	2023-11-14	2022-09-07	2.2	2.31	2.33	2.3	0.004	1.00	0.0	0.71	12.36	0.00	0.286	7.98	1.59	0.0	100.0	0.0	1.98	0.74	0.81	4.21	2.3	0.030	1.63	0.0	0.12	16.78	0.01	2.001	9.57	1.36	0.6	99.4	0.0	1.73	1.37	0.74	0.81	3.61	108060	13260	60	0	120	0	0	logfile
✘	8DMG	27536	2023-11-16	2022-07-08	4.4	5.39	4.50	4.6	0.029	2.33	20.0	0.12	16.89	0.01	0.312	28.72	6.80	6.0	92.3	1.7	-2.43	0.79	0.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16844	2068	4	0	18	0	202	logfile
✔	8EET	28057	2023-11-13	2022-09-07	3.1	3.36	3.21	3.4	0.007	0.92	0.0	0.06	12.28	0.00	0.312	9.93	1.07	0.5	99.5	0.0	1.87	0.72	0.82	3.55	3.4	0.037	2.69	0.0	0.32	14.46	0.00	0.378	13.19	0.11	1.1	98.9	0.0	2.07	1.31	0.68	0.83	2.96	107640	13260	60	0	120	0	0	logfile
✔	6TA3	10421	2023-11-14	2019-10-29	3.8	4.18	—	3.9	0.024	2.45	4.0	0.08	18.76	0.01	0.317	210.72	16.02	0.8	99.2	0.0	1.86	0.67	0.49	0.26	4.0	0.004	0.89	0.0	0.05	17.88	0.01	1.271	29.54	0.58	3.7	96.3	0.0	-0.37	2.45	0.78	0.74	0.54	9491	1201	6	0	5	0	0	logfile
✔	8SPo	40680	2023-11-20	2023-05-03	2.98	2.34	3.17	2.1	0.004	0.60	0.0	0.26	16.49	0.00	0.334	11.05	0.00	6.0	94.0	0.0	-1.15	0.46	0.30	0.19	1.6	0.004	0.73	0.0	0.04	18.26	0.00	1.816	13.01	2.09	6.6	93.4	0.0	-1.23	1.36	0.57	0.49	1.10	31307	3428	22	154	6	0	0	logfile
✔	6GJ1	0009	2023-11-15	2018-05-15	4.7	4.83	—	4.4	0.010	1.51	5.0	0.07	11.65	0.01	0.341	23.90	0.72	18.3	81.3	0.4	-5.15	0.83	0.71	—	4.4	0.003	0.89	0.0	0.05	12.57	0.01	2.086	22.39	0.00	16.4	83.4	0.1	-3.83	1.16	0.85	0.76	—	13013	1638	4	0	0	0	0	logfile
✔	6RDB	4812	2023-11-21	2019-04-12	2.8	2.89	2.82	2.9	0.008	1.00	0.0	0.06	14.82	0.01	0.351	8.68	1.23	4.1	95.8	0.1	-4.44	0.70	0.84	3.24	2.9	0.010	0.70	0.0	0.04	16.56	0.00	1.809	11.21	2.21	4.0	96.0	0.0	-0.15	0.53	0.70	0.86	2.95	33961	4506	31	0	10	40	0	logfile
✔	6SAG	10130	2023-11-13	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.004	0.66	0.0	0.04	15.32	0.01	2.026	3.22	1.43	2.9	97.1	0.0	1.37	0.73	0.60	0.90	6.95	54080	6120	240	120	240	2840	0	logfile
✘	8EGS	28129	2023-11-20	2022-09-13	3.92	4.06	3.83	4.0	0.003	0.57	0.0	0.04	14.97	0.00	0.357	27.78	0.35	3.7	96.3	0.0	-0.21	0.78	0.80	1.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30696	3756	18	0	0	0	0	logfile

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