Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ABK	11698	2021-09-02	2020-09-07	3.6	4.10	3.49	3.9	0.004	0.66	0.0	0.04	16.30	0.00	2.315	5.67	1.23	1.5	98.5	0.0	0.91	0.28	0.87	1.10	3.9	0.004	0.80	0.0	0.04	20.02	0.00	2.241	5.67	2.47	2.6	97.4	0.0	4.26	1.36	0.28	0.86	1.04	1574	196	1	0	0	0	0	logfile
✔	6CoZ	7545	2021-09-02	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.5	0.003	0.85	0.0	0.04	5.26	0.00	2.361	3.54	0.00	11.5	88.5	0.0	-1.90	1.67	0.83	0.78	—	1586	320	2	0	0	0	0	logfile
✔	5M6S	3451	2021-09-02	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	20.10	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.5	0.003	0.64	0.0	0.03	18.57	0.00	1.968	10.68	0.00	4.2	95.8	0.0	1.93	2.66	0.04	0.07	—	1593	98	1	0	0	0	793	logfile
✔	7oG6	12879	2021-09-02	2021-05-06	3.3	3.47	—	2.9	0.008	0.82	0.0	0.04	17.33	0.01	2.325	7.36	6.10	9.6	90.4	0.0	-4.47	0.28	0.82	2.77	2.9	0.003	0.61	0.0	0.04	16.34	0.00	2.253	7.36	0.00	6.1	93.9	0.0	-0.13	0.55	0.27	0.83	2.33	1602	199	2	5	0	0	0	logfile
✔	6VW2	21410	2021-09-02	2020-02-18	3.4	3.62	—	3.8	0.006	1.13	0.0	0.06	14.20	0.01	2.292	24.13	0.00	27.3	72.7	0.0	-4.46	0.42	0.71	2.71	3.9	0.003	0.79	0.0	0.05	14.59	0.00	2.242	10.76	0.95	17.3	82.7	0.0	-4.93	0.44	0.41	0.71	1.67	1800	240	10	0	0	0	0	logfile
✔	7BX7	30235	2021-09-02	2020-04-17	2.8	2.94	—	2.9	0.009	0.84	0.0	0.04	12.96	0.00	2.228	15.34	0.00	9.3	90.7	0.0	-5.83	0.40	0.78	6.36	2.9	0.004	0.60	0.0	0.04	13.82	0.00	2.170	11.28	2.30	8.1	91.9	0.0	-5.48	1.13	0.40	0.78	6.34	1896	270	6	0	0	0	0	logfile
✘	7JZU	22574	2021-09-02	2020-09-02	3.1	3.26	3.10	3.3	0.015	1.33	0.0	0.08	9.63	0.01	2.509	0.52	0.00	3.3	96.7	0.0	0.23	0.69	0.76	4.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1987	248	3	0	3	0	0	logfile
✔	6RJU	4906	2021-09-02	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	3.6	0.003	0.75	0.0	0.03	15.88	0.00	2.161	10.56	0.00	9.3	90.7	0.0	-1.56	1.74	0.30	0.08	-2.69	1992	131	1	0	0	0	997	logfile
✔	7JZM	22533	2021-09-02	2020-09-02	3.5	3.74	3.50	3.7	0.015	1.37	0.0	0.08	9.25	0.01	2.420	0.76	0.00	2.0	98.0	0.0	0.75	0.75	0.78	4.01	3.7	0.003	0.65	0.0	0.04	14.77	0.00	2.193	8.12	0.00	2.4	97.6	0.0	0.55	1.27	0.76	0.79	2.82	2033	258	3	0	3	0	0	logfile
✔	7C1D	30269	2021-09-02	2020-05-03	3.8	4.18	—	4.3	0.004	0.71	0.0	0.05	13.99	0.00	2.367	17.40	0.00	20.4	79.6	0.0	-6.46	0.34	0.74	3.47	6.5	0.004	0.69	0.0	0.05	14.89	0.00	2.232	21.81	0.52	20.1	79.9	0.0	-4.46	2.84	0.42	0.76	2.27	2034	306	6	0	0	0	0	logfile
✔	6ZS5	11388	2021-09-02	2020-07-15	3.5	4.02	3.66	3.8	0.008	1.01	1.0	0.06	15.42	0.01	2.202	4.52	0.00	4.7	95.3	0.0	-2.98	0.67	0.80	2.81	3.9	0.004	0.71	0.0	0.04	17.56	0.01	2.227	8.30	0.47	2.8	97.2	0.0	-1.73	2.37	0.67	0.79	2.36	2036	257	4	0	7	0	0	logfile
✔	6YJ5	10816	2021-09-02	2020-04-02	3.5	2.92	3.56	3.3	0.007	0.89	0.0	0.05	13.19	0.01	2.183	4.49	0.00	12.5	87.5	0.0	-5.13	0.42	0.62	3.01	3.3	0.004	0.74	0.0	0.05	15.66	0.01	2.252	8.98	0.61	9.2	90.8	0.0	-1.79	0.84	0.51	0.72	2.92	2061	306	1	0	0	0	0	logfile
✔	6WQK	21871	2021-09-02	2020-04-29	3.1	3.26	—	3.3	0.003	0.70	0.0	0.04	14.47	0.00	2.272	4.54	0.00	1.8	98.2	0.0	-5.40	0.48	0.84	4.99	3.3	0.005	0.74	0.0	0.05	13.65	0.00	2.234	5.07	0.54	4.7	95.3	0.0	-4.44	0.45	0.48	0.86	5.46	2070	285	5	0	0	0	0	logfile
✔	6GX5	0077	2021-09-02	2018-06-26	3.2	2.51	2.94	3.2	0.017	1.20	0.0	0.11	16.09	0.01	2.596	5.96	4.94	4.3	95.7	0.0	-3.50	0.85	0.88	5.60	3.2	0.004	0.74	0.0	0.05	17.29	0.00	2.258	8.02	0.41	5.4	94.6	0.0	-2.79	0.65	0.83	0.86	5.18	2133	282	3	0	0	0	0	logfile
✔	6F1Z	4172	2021-09-02	2017-11-23	3.4	4.16	—	3.4	0.004	0.97	0.0	0.06	11.17	0.01	2.264	11.67	0.81	8.6	91.4	0.0	-4.21	0.64	0.68	-1.41	3.5	0.004	0.96	0.0	0.05	16.51	0.01	2.074	30.11	0.00	8.6	91.4	0.0	-1.36	1.85	0.67	0.77	-0.13	2138	265	4	0	0	0	0	logfile
✔	7JV2	22491	2021-09-02	2020-08-20	3.5	3.48	3.41	3.7	0.015	1.39	0.0	0.08	11.43	0.01	2.587	0.00	1.32	3.6	96.4	0.0	0.82	0.69	0.74	3.48	3.7	0.004	0.72	0.0	0.04	14.86	0.00	2.255	12.84	0.88	6.9	93.1	0.0	-0.65	1.28	0.71	0.78	3.52	2151	282	3	0	0	0	0	logfile
✔	6PEo	20328	2021-09-02	2019-06-20	3.3	3.52	—	3.6	0.003	0.54	0.0	0.05	13.06	0.01	2.492	10.62	0.00	9.7	90.3	0.0	-1.64	0.41	0.82	3.20	3.6	0.007	0.71	0.0	0.06	15.68	0.00	2.399	9.07	0.44	9.4	90.6	0.0	-2.46	2.46	0.43	0.83	4.69	2205	320	5	0	0	0	0	logfile
✔	7B6E	12053	2021-09-02	2020-12-07	4.5	2.79	—	5.1	0.005	1.03	0.0	0.05	15.04	0.01	2.129	35.59	0.00	10.9	89.1	0.0	-3.88	0.62	0.66	—	4.9	0.003	0.99	0.0	0.05	14.80	0.00	2.185	23.73	0.00	11.3	88.7	0.0	-1.49	1.10	0.61	0.65	—	2205	269	1	0	0	0	0	logfile
✔	6ZRF	11380	2021-09-02	2020-07-13	3.6	3.66	1.96	3.6	0.014	1.03	0.0	0.05	13.43	0.00	1.993	39.08	0.00	4.9	95.1	0.0	-6.22	0.67	0.79	1.84	3.7	0.007	0.86	0.0	0.05	14.96	0.00	2.128	29.34	0.42	15.2	84.8	0.0	-5.99	0.53	0.71	0.82	3.09	2220	300	12	0	0	0	0	logfile
✔	6L4S	0833	2021-09-02	2019-10-21	3.37	3.47	—	4.0	0.014	1.36	0.0	0.09	10.28	0.01	2.408	7.28	0.00	5.7	94.3	0.0	-3.73	0.28	0.67	4.12	4.1	0.003	0.69	0.0	0.05	14.80	0.00	2.302	12.00	0.00	4.7	95.3	0.0	-3.23	3.14	0.34	0.73	2.33	2268	330	6	0	0	0	0	logfile

• ← previous
• Page 2 of 279
• next →