Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7P03	13142	2023-02-23	2021-06-29	3.45	3.78	—	3.7	0.006	0.68	0.0	0.04	13.86	0.00	1.801	6.52	0.00	5.4	94.6	0.0	-0.70	0.62	0.71	1.37	3.7	0.004	0.57	0.0	0.04	15.79	0.00	1.838	7.56	0.17	4.4	95.6	0.0	0.48	0.89	0.64	0.78	1.93	21149	1333	1	0	0	0	10498	logfile
✔	6JXC	9893	2023-02-21	2019-04-23	4.1	4.20	—	4.1	0.018	1.71	0.0	0.09	8.99	0.01	2.221	4.77	0.38	9.3	87.7	3.0	-1.28	0.50	0.61	—	4.1	0.003	0.78	0.0	0.04	12.25	0.00	2.095	10.70	0.00	11.5	86.8	1.7	0.44	0.96	0.55	0.69	—	15270	2345	1	0	0	0	0	logfile
✔	7ADJ	11727	2023-02-19	2020-09-15	2.8	3.02	2.79	3.0	0.014	1.99	4.0	0.11	14.68	0.01	2.562	0.51	0.18	6.9	93.1	0.0	-2.18	0.34	0.70	3.50	3.0	0.003	0.64	0.0	0.04	17.18	0.00	2.131	7.42	2.57	7.9	92.1	0.0	-1.24	1.53	0.40	0.77	2.99	9710	613	1	0	0	0	4790	logfile
✔	6V4D	21040	2023-02-17	2019-11-27	3.8	4.13	—	4.1	0.007	0.90	0.0	0.06	13.63	0.01	1.752	21.24	1.35	7.0	93.0	0.0	-3.84	0.49	0.80	2.10	4.1	0.003	0.85	0.0	0.04	16.59	0.00	2.082	12.48	0.68	5.3	94.7	0.0	-0.62	0.65	0.47	0.78	1.50	3095	422	1	0	0	0	0	logfile
✘	7QFQ	13947	2023-02-19	2021-12-06	3.6	3.83	3.58	4.0	0.002	0.54	0.0	0.04	12.93	0.00	2.177	8.31	0.00	5.4	94.6	0.0	-0.70	0.65	0.70	1.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10659	1291	1	0	0	0	0	logfile
✔	6RJU	4906	2023-02-16	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	9.8	0.003	0.63	0.0	0.03	15.97	0.00	2.424	6.03	0.00	6.2	93.8	0.0	-0.13	1.31	0.27	0.05	0.48	1992	131	1	0	0	0	997	logfile
✔	7WHN	32505	2023-02-19	2021-12-31	3.3	2.99	—	3.2	0.009	0.80	0.0	0.05	13.81	0.01	2.147	7.64	0.10	4.5	95.5	0.0	-1.29	0.41	0.83	2.92	3.2	0.002	0.49	0.0	0.04	15.00	0.00	2.281	5.42	0.10	2.7	97.3	0.0	0.94	0.40	0.37	0.82	2.21	9284	1170	1	0	0	0	0	logfile
✔	7WHM	32504	2023-02-19	2021-12-31	2.7	2.86	—	2.8	0.006	0.64	0.0	0.05	13.85	0.00	2.155	6.30	0.00	3.1	96.9	0.0	0.15	0.43	0.87	4.68	2.8	0.003	0.51	0.0	0.04	15.95	0.00	2.260	5.62	0.56	2.3	97.7	0.0	1.45	1.11	0.40	0.84	3.69	9650	1214	1	0	0	0	0	logfile
✔	7KTV	23031	2023-02-18	2020-11-24	4.5	4.83	—	4.5	0.006	1.06	0.0	0.06	12.50	0.01	2.221	17.73	0.12	6.5	93.5	0.0	-5.20	0.80	0.79	—	6.7	0.003	0.77	0.0	0.04	13.13	0.00	2.155	19.49	0.12	3.8	96.2	0.0	-0.43	0.90	0.79	0.76	—	7577	995	1	0	0	0	0	logfile
✔	7FAS	31505	2023-02-19	2021-07-07	3.6	2.95	—	3.7	0.002	0.52	0.0	0.04	15.63	0.00	2.193	9.05	0.09	4.1	95.9	0.0	0.85	0.72	0.73	0.88	3.7	0.003	0.54	0.0	0.04	17.25	0.00	2.192	9.70	0.18	4.1	95.9	0.0	1.07	0.43	0.73	0.75	0.97	10173	1229	1	0	0	0	0	logfile
✔	7KTW	23032	2023-02-18	2020-11-24	4.27	4.73	—	4.4	0.007	1.12	0.0	0.05	12.46	0.01	2.214	14.28	0.12	5.1	94.9	0.0	-4.61	0.81	0.82	—	4.4	0.003	0.80	0.0	0.04	13.32	0.00	2.163	18.78	0.12	3.4	96.6	0.0	0.23	0.96	0.80	0.79	—	7577	995	1	0	0	0	0	logfile
✔	8H8B	34541	2023-02-18	2022-10-22	3.16	3.37	3.20	3.3	0.001	0.46	0.0	0.04	13.00	0.00	2.226	6.42	0.67	6.3	93.7	0.0	-2.99	0.70	0.76	2.74	3.3	0.003	0.62	0.0	0.04	15.26	0.00	2.256	6.60	0.34	9.5	90.5	0.0	-1.76	0.61	0.74	0.85	3.67	8344	1027	1	0	0	0	0	logfile
✔	7KTT	23029	2023-02-18	2020-11-24	4.17	4.46	—	4.2	0.007	1.04	0.0	0.06	13.23	0.01	2.239	12.66	0.25	5.7	94.3	0.0	-5.41	0.81	0.78	—	4.2	0.003	0.73	0.0	0.04	13.82	0.00	2.116	20.56	0.00	3.3	96.7	0.0	0.00	0.67	0.81	0.76	—	7568	994	1	0	0	0	0	logfile
✔	7V0X	26952	2023-02-17	2022-05-11	3.0	2.83	2.92	2.9	0.002	0.63	0.0	0.04	19.06	0.01	2.211	6.52	5.05	4.0	96.0	0.0	0.72	0.61	0.88	3.78	2.9	0.002	0.53	0.0	0.04	19.08	0.00	2.176	7.23	4.38	4.9	95.1	0.0	1.77	0.47	0.60	0.88	3.17	2818	375	1	0	0	0	0	logfile
✔	7JGD	22323	2023-02-23	2020-07-19	3.38	3.68	—	3.6	0.002	0.43	0.0	0.05	12.94	0.00	2.123	11.45	0.00	3.9	96.1	0.0	1.18	0.61	0.66	2.22	3.6	0.003	0.53	0.0	0.05	14.82	0.00	2.054	14.21	0.08	7.3	92.7	0.0	0.43	0.52	0.63	0.71	1.77	20292	1435	1	0	0	0	8505	logfile
✔	7UVT	26816	2023-02-20	2022-05-02	3.9	4.17	4.00	4.1	0.001	0.41	0.0	0.02	16.13	0.00	1.897	6.61	0.00	0.0	0.0	0.0	—	0.76	0.74	—	4.1	0.006	0.70	0.0	0.04	17.94	0.01	1.892	21.35	0.00	0.0	0.0	0.0	—	0.48	0.77	0.76	—	12409	0	1	386	0	0	4149	logfile
✔	7KTU	23030	2023-02-18	2020-11-24	4.15	4.49	—	4.2	0.006	1.05	0.0	0.05	12.61	0.01	2.259	12.91	0.37	4.3	95.7	0.0	-5.35	0.81	0.79	—	4.2	0.003	0.79	0.0	0.04	13.23	0.00	2.086	18.78	0.00	3.4	96.6	0.0	-0.16	0.95	0.80	0.76	—	7577	995	1	0	0	0	0	logfile
✔	7W88	32353	2023-02-18	2021-12-07	3.5	3.65	—	3.6	0.003	0.71	0.0	0.04	16.87	0.00	2.225	15.22	8.23	15.2	84.8	0.0	-5.15	0.70	0.69	1.82	3.6	0.003	0.75	0.0	0.04	17.22	0.00	2.213	16.06	0.64	15.3	84.7	0.0	-3.13	0.94	0.70	0.69	1.73	7138	896	1	0	0	0	0	logfile
✔	7B54	12018	2023-02-21	2020-12-03	3.1	3.96	—	3.6	0.005	0.77	0.0	0.04	14.53	0.00	2.081	15.09	0.19	12.5	87.1	0.4	-1.25	0.82	0.83	1.99	3.6	0.004	0.69	0.0	0.04	15.77	0.00	2.146	12.53	0.13	11.8	87.8	0.4	-0.68	0.35	0.81	0.82	1.43	14148	1732	1	0	0	0	0	logfile
✔	7NNH	12477	2023-02-17	2021-02-24	4.0	5.15	—	4.2	0.004	1.27	0.0	0.05	15.82	0.01	2.066	35.16	0.34	23.0	76.5	0.5	-3.61	0.74	0.80	—	4.2	0.003	1.12	0.0	0.05	16.96	0.01	2.116	27.42	0.34	20.2	79.5	0.3	-2.65	0.71	0.74	0.79	—	5299	637	1	0	0	0	0	logfile

• ← previous
• Page 2 of 353
• next →