Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8E2G	27835	2023-07-04	2022-08-15	2.99	3.17	3.03	3.1	0.003	0.60	0.0	0.04	15.68	0.00	1.928	12.10	2.42	6.4	93.6	0.0	-1.77	0.46	0.74	2.37	3.1	0.003	0.58	0.0	0.04	15.95	0.00	1.938	11.98	2.86	7.6	92.4	0.0	-1.67	1.00	0.46	0.74	2.07	8110	523	1	0	0	0	4078	logfile
✔	7RQS	24635	2023-07-04	2021-08-07	3.57	2.31	3.59	2.0	0.002	0.54	0.0	0.04	13.38	0.00	2.088	9.87	0.26	7.6	92.4	0.0	-0.91	0.70	0.68	2.53	2.0	0.003	0.64	0.0	0.04	15.66	0.00	1.984	11.67	0.26	8.9	91.0	0.1	-1.05	0.58	0.71	0.69	2.23	7792	1074	1	0	1	0	0	logfile
✔	8F7J	28905	2023-07-03	2022-11-18	4.32	4.45	4.63	8.9	0.005	0.92	0.0	0.05	15.44	0.01	2.282	15.12	0.26	5.7	94.3	0.0	-3.18	0.38	0.32	—	4.3	0.004	0.80	0.0	0.04	13.92	0.01	2.122	24.96	0.00	9.4	90.6	0.0	-3.21	2.94	0.44	0.45	—	3321	407	1	0	0	0	0	logfile
✔	7TPK	26058	2023-07-03	2022-01-25	3.4	3.41	—	3.4	0.011	1.40	1.0	0.08	9.69	0.01	2.528	2.12	0.00	4.7	95.3	0.0	-0.98	0.60	0.72	4.39	3.4	0.004	0.63	0.0	0.04	15.27	0.00	2.331	4.95	0.00	4.2	95.8	0.0	-1.45	1.26	0.65	0.81	3.26	1484	194	1	0	1	0	0	logfile
✔	8P6A	17462	2023-07-03	2023-05-25	3.63	3.93	3.43	3.9	0.003	0.66	0.0	0.04	17.40	0.00	2.161	10.48	0.29	2.4	97.6	0.0	2.80	0.57	0.81	1.41	3.9	0.003	0.65	0.0	0.04	17.37	0.00	2.146	11.22	0.00	3.1	96.9	0.0	2.99	0.85	0.57	0.81	1.29	3337	432	1	0	0	0	0	logfile
✔	7T3N	25665	2023-07-03	2021-12-08	3.0	3.31	—	3.3	0.009	0.73	0.0	0.05	15.07	0.01	2.131	5.13	0.00	4.7	95.3	0.0	-3.24	0.51	0.85	3.81	3.2	0.003	0.66	0.0	0.04	16.02	0.01	2.275	7.19	1.16	3.1	96.9	0.0	-0.21	0.37	0.49	0.85	2.69	3512	452	1	0	2	0	0	logfile
✔	8DRQ	27681	2023-07-03	2022-07-21	4.16	4.28	4.60	4.1	0.004	0.89	0.0	0.05	15.60	0.01	2.283	15.85	0.00	5.9	94.1	0.0	-3.30	0.39	0.56	—	4.1	0.003	0.81	0.0	0.05	13.41	0.00	2.156	19.67	0.00	8.1	91.9	0.0	-3.21	1.78	0.41	0.56	—	3321	407	1	0	0	0	0	logfile
✔	7P04	13143	2023-07-10	2021-06-29	2.85	2.64	—	2.9	0.005	0.66	1.0	0.04	13.94	0.00	2.061	7.70	0.00	3.6	96.4	0.0	-0.21	0.61	0.81	4.06	3.1	0.003	0.54	1.0	0.04	15.76	0.00	2.090	6.77	0.86	3.0	97.0	0.0	0.93	0.80	0.61	0.83	3.29	21543	1353	1	0	2	0	10675	logfile
✔	7N9Q	24259	2023-07-04	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.5	0.003	1.00	0.0	0.00	5.05	0.00	2.580	6.76	0.00	12.3	86.7	0.9	-4.51	2.40	0.85	0.81	—	6945	2315	1	0	0	0	0	logfile
✔	8E4Y	27898	2023-07-03	2022-08-19	3.4	3.42	3.37	3.5	0.016	1.86	0.0	0.09	15.22	0.01	2.412	0.75	0.00	3.8	96.2	0.0	-2.41	0.56	0.75	2.88	3.5	0.003	0.50	0.0	0.04	16.51	0.00	2.204	4.03	0.00	2.5	97.5	0.0	1.32	1.32	0.69	0.88	2.47	5294	651	1	0	2	0	0	logfile
✔	6BHU	7099	2023-07-05	2017-10-31	3.14	3.58	3.62	3.7	0.008	1.22	0.0	0.06	12.26	0.00	1.915	0.69	0.00	3.7	96.3	0.0	-1.76	0.48	0.69	2.60	3.7	0.003	0.57	0.0	0.04	15.20	0.00	1.978	5.37	0.47	2.0	98.0	0.0	1.92	0.71	0.58	0.83	1.65	10273	1208	1	0	127	0	0	logfile
✔	8i4A	35167	2023-07-05	2023-01-19	3.4	3.59	3.42	3.6	0.012	0.94	0.0	0.05	15.10	0.01	2.115	13.72	0.00	5.1	94.9	0.0	-1.46	0.61	0.79	2.13	3.6	0.003	0.59	0.0	0.04	15.83	0.00	2.214	8.00	0.28	2.2	97.8	0.0	1.15	1.13	0.59	0.79	1.11	9763	1218	1	0	1	0	0	logfile
✔	6D3R	7793	2023-07-04	2018-04-16	4.3	4.80	4.40	4.5	0.017	1.75	0.0	0.10	9.07	0.01	2.385	0.57	0.00	1.5	98.5	0.0	0.66	0.66	0.76	—	4.5	0.003	0.65	0.0	0.04	11.96	0.00	2.185	7.56	0.00	3.4	96.6	0.0	1.90	1.20	0.68	0.78	—	7610	1127	1	0	2	0	0	logfile
✔	7Y1J	33563	2023-07-05	2022-06-08	3.0	3.08	2.83	3.1	0.004	0.51	0.0	0.04	10.87	0.00	1.971	5.91	0.69	0.8	99.2	0.0	2.20	0.67	0.83	3.67	3.1	0.005	0.56	0.0	0.04	14.89	0.00	1.881	6.96	1.28	1.1	98.9	0.0	1.92	0.49	0.71	0.87	3.23	9487	1204	1	0	5	0	0	logfile
✔	7UiU	26553	2023-07-03	2022-03-29	2.8	3.11	2.72	3.1	0.004	0.62	0.0	0.04	13.60	0.00	2.356	3.35	0.00	4.8	95.2	0.0	-2.09	0.28	0.82	1.99	3.1	0.004	0.96	0.0	0.04	17.04	0.00	2.228	11.74	1.67	4.8	95.2	0.0	-2.17	1.37	0.28	0.89	2.33	607	85	1	0	0	0	0	logfile
✔	6ZH4	11213	2023-07-13	2020-06-20	3.62	4.39	3.75	4.0	0.005	0.69	0.0	0.04	14.48	0.00	2.199	14.27	0.03	7.6	92.4	0.0	-0.76	0.89	0.87	1.88	4.0	0.003	0.64	0.0	0.04	15.83	0.00	2.143	11.83	0.25	6.3	93.7	0.0	0.48	0.36	0.88	0.86	1.50	29352	3670	1	0	28	0	0	logfile
✔	7T3o	25666	2023-07-03	2021-12-08	3.3	3.72	—	3.7	0.006	0.68	0.0	0.05	13.49	0.00	2.284	3.91	0.29	7.1	92.9	0.0	-3.36	0.49	0.86	1.84	3.7	0.003	0.66	0.0	0.04	16.17	0.00	2.229	6.17	0.00	3.6	96.4	0.0	0.21	0.58	0.48	0.84	1.64	3410	452	1	0	0	0	0	logfile
✔	7B6E	12053	2023-07-03	2020-12-07	4.5	2.79	—	5.1	0.005	1.03	0.0	0.05	15.04	0.01	2.129	36.05	0.00	10.9	89.1	0.0	-3.88	0.62	0.66	—	2.4	0.004	0.99	0.0	0.05	14.87	0.00	2.111	27.61	0.00	11.3	88.7	0.0	-1.65	0.83	0.61	0.67	—	2205	269	1	0	0	0	0	logfile
✔	7UGX	26498	2023-07-04	2022-03-25	2.96	3.60	2.95	3.5	0.002	0.50	0.0	0.04	10.61	0.00	2.234	3.61	0.00	1.5	98.5	0.0	1.81	0.48	0.83	2.71	3.5	0.003	0.63	0.0	0.04	13.34	0.00	2.184	6.27	0.62	2.2	97.8	0.0	2.70	0.98	0.49	0.88	1.91	3108	416	1	0	3	0	0	logfile
✔	7UGD	26487	2023-07-04	2022-03-24	2.95	3.61	2.95	3.5	0.002	0.45	0.0	0.04	11.38	0.00	2.005	2.21	0.00	0.7	99.3	0.0	0.34	0.49	0.84	3.05	3.5	0.004	0.58	0.0	0.04	14.29	0.00	2.225	3.80	0.31	0.2	99.8	0.0	2.52	0.45	0.49	0.85	2.12	3079	415	1	0	3	0	0	logfile

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